Wall clock time and date at job start Mon Mar 30 2020 04:05:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.50785 * 2 1 4 4 C 1.53056 * 109.48909 * 120.05081 * 2 1 3 5 5 N 1.46956 * 109.38342 * 178.37937 * 4 2 1 6 6 C 1.39673 * 111.00070 * 176.80229 * 5 4 2 7 7 C 1.38916 * 120.07348 * 235.77138 * 6 5 4 8 8 C 1.38107 * 119.92409 * 179.76874 * 7 6 5 9 9 C 1.38285 * 120.07042 * 0.50906 * 8 7 6 10 10 C 1.38285 * 120.15453 * 359.74443 * 9 8 7 11 11 C 1.38102 * 120.07320 * 359.97438 * 10 9 8 12 12 C 1.46954 * 110.88102 * 300.67443 * 5 4 2 13 13 H 1.09002 * 109.48674 * 299.32520 * 12 5 4 14 14 C 1.50707 * 109.49004 * 179.28815 * 12 5 4 15 15 H 1.07997 * 119.99765 * 359.97438 * 14 12 5 16 16 C 1.37877 * 119.99912 * 179.97438 * 14 12 5 17 17 N 1.31517 * 120.00016 * 0.02562 * 16 14 12 18 18 Si 1.86796 * 119.99633 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47197 * 90.00537 * 18 16 14 20 20 H 1.48508 * 109.47140 * 210.00246 * 18 16 14 21 21 H 1.48496 * 109.47514 * 330.00072 * 18 16 14 22 22 C 1.53042 * 109.36722 * 59.31806 * 12 5 4 23 23 N 1.46956 * 109.36474 * 301.60143 * 22 12 5 24 24 H 1.09007 * 109.46860 * 299.94641 * 1 2 3 25 25 H 1.08996 * 109.47159 * 59.94612 * 1 2 3 26 26 H 1.09003 * 109.46726 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.48813 * 58.40214 * 4 2 1 28 28 H 1.09002 * 109.48870 * 298.36103 * 4 2 1 29 29 H 1.07996 * 120.03584 * 0.02562 * 7 6 5 30 30 H 1.07992 * 119.96247 * 180.25057 * 8 7 6 31 31 H 1.08004 * 119.92453 * 179.72067 * 9 8 7 32 32 H 1.08001 * 119.96524 * 180.02562 * 10 9 8 33 33 H 1.08004 * 120.04037 * 180.02562 * 11 10 9 34 34 H 0.96999 * 119.99380 * 179.97438 * 17 16 14 35 35 H 1.09002 * 109.49013 * 61.56846 * 22 12 5 36 36 H 1.09002 * 109.49164 * 181.61276 * 22 12 5 37 37 H 1.00901 * 111.00009 * 295.44794 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0406 -0.7225 1.2489 5 7 3.5097 -0.7552 1.2271 6 6 4.0145 -1.3444 2.3885 7 6 4.9228 -0.6540 3.1811 8 6 5.4164 -1.2377 4.3314 9 6 5.0155 -2.5120 4.6887 10 6 4.1156 -3.2041 3.8992 11 6 3.6136 -2.6241 2.7507 12 6 4.0004 -1.4491 0.0283 13 1 3.6368 -2.4767 0.0285 14 6 5.5075 -1.4492 0.0288 15 1 6.0471 -0.9803 0.8383 16 6 6.1972 -2.0477 -1.0041 17 7 5.5400 -2.6183 -1.9901 18 14 8.0652 -2.0471 -1.0037 19 1 8.5604 -3.2583 -0.3016 20 1 8.5605 -2.0493 -2.4037 21 1 8.5597 -0.8333 -0.3057 22 6 3.4903 -0.7268 -1.2208 23 7 2.0212 -0.6941 -1.1990 24 1 -0.3633 0.5130 0.8905 25 1 -0.3633 0.5146 -0.8895 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6544 -1.7417 1.2628 28 1 1.7018 -0.1931 2.1394 29 1 5.2393 0.3396 2.9004 30 1 6.1193 -0.6999 4.9501 31 1 5.4065 -2.9679 5.5863 32 1 3.8043 -4.1991 4.1814 33 1 2.9105 -3.1650 2.1347 34 1 6.0253 -3.0390 -2.7170 35 1 3.8765 0.2924 -1.2347 36 1 3.8293 -1.2563 -2.1112 37 1 1.6379 -1.6255 -1.2600 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000221060154.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:57 Heat of formation + Delta-G solvation = 18.980569 kcal Electronic energy + Delta-G solvation = -18422.479923 eV Core-core repulsion = 15777.623114 eV Total energy + Delta-G solvation = -2644.856809 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.13034 -39.01681 -35.68428 -34.95903 -32.53452 -31.74515 -30.20755 -28.95520 -26.09085 -25.57118 -23.47852 -23.04848 -21.95591 -20.99646 -18.65966 -17.84217 -17.03043 -16.46129 -16.13761 -15.95871 -15.61198 -15.43504 -15.12854 -14.68850 -14.22966 -14.06080 -13.83225 -13.33888 -13.10565 -12.84377 -12.78639 -12.67765 -12.38202 -12.22240 -12.05208 -12.01542 -11.84181 -11.69407 -11.29341 -10.62385 -9.75573 -9.46442 -9.28594 -9.05467 -8.16988 -6.25361 0.53117 0.58980 1.37604 1.38986 1.49248 2.38195 2.93623 3.10537 3.12805 3.51711 4.04101 4.08221 4.17888 4.23644 4.31459 4.37350 4.56336 4.61863 4.66025 4.67834 4.82018 4.88011 4.95353 4.97384 5.19869 5.20834 5.23956 5.32166 5.54930 5.60641 5.66081 5.66382 5.82302 5.99142 6.10585 6.20302 6.50563 6.57994 6.70234 6.90938 7.41593 8.89362 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.014076 B = 0.012252 C = 0.007275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.706503 B = 2284.880628 C = 3847.921355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.085 3.915 3 H 0.073 0.927 4 C 0.033 3.967 5 N -0.514 5.514 6 C 0.113 3.887 7 C -0.118 4.118 8 C -0.115 4.115 9 C -0.136 4.136 10 C -0.117 4.117 11 C -0.170 4.170 12 C 0.207 3.793 13 H -0.036 1.036 14 C -0.515 4.515 15 H 0.055 0.945 16 C 0.018 3.982 17 N -0.916 5.916 18 Si 0.954 3.046 19 H -0.280 1.280 20 H -0.280 1.280 21 H -0.269 1.269 22 C 0.080 3.920 23 N -0.686 5.686 24 H 0.077 0.923 25 H 0.069 0.931 26 H 0.054 0.946 27 H 0.020 0.980 28 H 0.080 0.920 29 H 0.116 0.884 30 H 0.148 0.852 31 H 0.152 0.848 32 H 0.138 0.862 33 H 0.096 0.904 34 H 0.263 0.737 35 H 0.041 0.959 36 H 0.082 0.918 37 H 0.330 0.670 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.526 1.845 9.909 11.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.025 4.025 3 H 0.091 0.909 4 C -0.096 4.096 5 N -0.236 5.236 6 C 0.019 3.981 7 C -0.137 4.137 8 C -0.134 4.134 9 C -0.153 4.153 10 C -0.135 4.135 11 C -0.190 4.190 12 C 0.100 3.900 13 H -0.018 1.018 14 C -0.554 4.554 15 H 0.073 0.927 16 C -0.182 4.182 17 N -0.556 5.556 18 Si 0.780 3.220 19 H -0.206 1.206 20 H -0.205 1.205 21 H -0.194 1.194 22 C -0.050 4.050 23 N -0.314 5.314 24 H 0.096 0.904 25 H 0.088 0.912 26 H 0.073 0.927 27 H 0.038 0.962 28 H 0.098 0.902 29 H 0.134 0.866 30 H 0.166 0.834 31 H 0.169 0.831 32 H 0.155 0.845 33 H 0.114 0.886 34 H 0.072 0.928 35 H 0.059 0.941 36 H 0.100 0.900 37 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -5.392 2.828 9.264 11.086 hybrid contribution 0.977 -1.750 0.179 2.012 sum -4.415 1.077 9.443 10.480 Atomic orbital electron populations 1.21696 0.91723 1.02320 1.03036 1.21701 0.96387 0.97871 0.86566 0.90901 1.22906 0.87161 0.98749 1.00795 1.59923 1.07821 1.54337 1.01491 1.18947 0.95995 0.91896 0.91292 1.21151 0.97100 1.00447 0.95044 1.21369 0.99778 0.96027 0.96191 1.21399 0.98126 0.94939 1.00863 1.21236 0.97679 1.00329 0.94296 1.21614 1.02740 0.95964 0.98725 1.19673 0.94798 0.89016 0.86469 1.01850 1.21275 0.91369 1.35630 1.07122 0.92696 1.25607 1.02626 0.94805 0.95112 1.69963 1.36674 1.37829 1.11140 0.85603 0.80630 0.78412 0.77339 1.20574 1.20514 1.19404 1.21943 0.85136 0.98662 0.99277 1.60986 1.08552 1.22658 1.39215 0.90401 0.91237 0.92661 0.96164 0.90176 0.86561 0.83384 0.83071 0.84451 0.88590 0.92775 0.94068 0.90022 0.85352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.28 9.45 71.98 0.68 -2.60 16 2 C 0.09 2.93 3.20 44.92 0.14 3.07 16 3 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 4 C 0.03 1.20 4.54 86.31 0.39 1.59 16 5 N -0.51 -22.67 4.50 -675.08 -3.04 -25.71 16 6 C 0.11 4.71 3.70 38.22 0.14 4.85 16 7 C -0.12 -4.47 9.09 22.40 0.20 -4.27 16 8 C -0.12 -3.51 10.04 22.25 0.22 -3.29 16 9 C -0.14 -3.84 10.04 22.29 0.22 -3.61 16 10 C -0.12 -3.74 10.04 22.25 0.22 -3.51 16 11 C -0.17 -6.67 8.68 22.40 0.19 -6.47 16 12 C 0.21 10.58 1.75 44.18 0.08 10.65 16 13 H -0.04 -2.06 7.68 -2.39 -0.02 -2.08 16 14 C -0.52 -28.65 8.05 25.60 0.21 -28.44 16 15 H 0.05 3.10 6.58 -2.91 -0.02 3.08 16 16 C 0.02 0.98 5.30 84.65 0.45 1.43 16 17 N -0.92 -52.36 11.35 21.45 0.24 -52.12 16 18 Si 0.95 44.33 29.54 68.60 2.03 46.36 16 19 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 20 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 21 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 22 C 0.08 3.91 5.76 86.31 0.50 4.41 16 23 N -0.69 -27.58 6.56 -491.06 -3.22 -30.80 16 24 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 25 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.02 0.76 7.05 -2.39 -0.02 0.74 16 28 H 0.08 2.65 8.13 -2.39 -0.02 2.63 16 29 H 0.12 4.39 8.06 -2.91 -0.02 4.37 16 30 H 0.15 3.46 8.06 -2.91 -0.02 3.44 16 31 H 0.15 3.10 8.06 -2.91 -0.02 3.08 16 32 H 0.14 3.57 8.06 -2.91 -0.02 3.55 16 33 H 0.10 3.90 7.06 -2.91 -0.02 3.88 16 34 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 35 H 0.04 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.08 4.47 6.13 -2.39 -0.01 4.45 16 37 H 0.33 13.01 8.80 -89.69 -0.79 12.23 16 Total: -1.00 -61.76 295.57 -0.08 -61.83 By element: Atomic # 1 Polarization: 26.37 SS G_CDS: 0.26 Total: 26.63 kcal Atomic # 6 Polarization: -29.85 SS G_CDS: 3.65 Total: -26.20 kcal Atomic # 7 Polarization: -102.61 SS G_CDS: -6.02 Total: -108.63 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Total: -61.76 -0.08 -61.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221060154.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.812 kcal (2) G-P(sol) polarization free energy of solvation -61.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds