Wall clock time and date at job start Mon Mar 30 2020 04:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46949 * 111.00162 * 2 1 4 4 C 1.53054 * 109.36485 * 176.81387 * 3 2 1 5 5 N 1.46960 * 109.36123 * 58.40462 * 4 3 2 6 6 C 1.39680 * 110.99563 * 176.81240 * 5 4 3 7 7 C 1.38909 * 120.07314 * 63.40511 * 6 5 4 8 8 C 1.38112 * 119.92170 * 179.76969 * 7 6 5 9 9 C 1.38285 * 120.07353 * 0.50256 * 8 7 6 10 10 C 1.38285 * 120.14970 * 359.74793 * 9 8 7 11 11 C 1.38102 * 120.07661 * 0.02562 * 10 9 8 12 12 C 1.46959 * 110.88002 * 300.67715 * 5 4 3 13 13 H 1.08999 * 109.50403 * 299.34884 * 12 5 4 14 14 C 1.50697 * 109.49016 * 179.29278 * 12 5 4 15 15 H 1.08005 * 120.00000 * 0.10986 * 14 12 5 16 16 C 1.37870 * 119.99978 * 180.10827 * 14 12 5 17 17 N 1.31512 * 120.00110 * 0.02562 * 16 14 12 18 18 Si 1.86806 * 119.99856 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47151 * 270.00353 * 18 16 14 20 20 H 1.48497 * 109.46995 * 30.00546 * 18 16 14 21 21 H 1.48502 * 109.46836 * 150.00021 * 18 16 14 22 22 C 1.46961 * 110.99766 * 236.20252 * 2 1 3 23 23 H 1.08996 * 109.47161 * 183.79809 * 1 2 3 24 24 H 1.09007 * 109.46418 * 303.79535 * 1 2 3 25 25 H 1.08997 * 109.47315 * 63.79668 * 1 2 3 26 26 H 1.09000 * 109.48967 * 296.78274 * 3 2 1 27 27 H 1.09005 * 109.49126 * 56.82562 * 3 2 1 28 28 H 1.09006 * 109.48869 * 178.36780 * 4 3 2 29 29 H 1.08998 * 109.48882 * 298.41322 * 4 3 2 30 30 H 1.07996 * 120.04373 * 359.97438 * 7 6 5 31 31 H 1.08000 * 119.96157 * 180.25581 * 8 7 6 32 32 H 1.07999 * 119.92836 * 179.77367 * 9 8 7 33 33 H 1.08001 * 119.96669 * 180.02562 * 10 9 8 34 34 H 1.08002 * 120.03888 * 180.02562 * 11 10 9 35 35 H 0.97005 * 119.99916 * 179.97438 * 17 16 14 36 36 H 1.09000 * 109.48775 * 63.21456 * 22 2 1 37 37 H 1.09007 * 109.50380 * 303.16600 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9957 1.3719 0.0000 4 6 3.5235 1.3290 0.0803 5 7 4.0501 0.5658 -1.0600 6 6 5.4468 0.5658 -1.0600 7 6 6.1429 -0.0282 -0.0149 8 6 7.5240 -0.0306 -0.0204 9 6 8.2139 0.5665 -1.0596 10 6 7.5240 1.1632 -2.0990 11 6 6.1430 1.1651 -2.1020 12 6 3.5234 -0.8062 -1.0600 13 1 3.8253 -1.3119 -0.1428 14 6 4.0685 -1.5540 -2.2493 15 1 4.7406 -1.0605 -2.9358 16 6 3.7093 -2.8681 -2.4611 17 7 2.8906 -3.4689 -1.6255 18 14 4.3845 -3.7949 -3.9359 19 1 3.4702 -3.6181 -5.0926 20 1 5.7278 -3.2644 -4.2811 21 1 4.4923 -5.2388 -3.6061 22 6 1.9956 -0.7632 -1.1402 23 1 -0.3633 -1.0254 0.0681 24 1 -0.3632 0.5717 0.8541 25 1 -0.3634 0.4538 -0.9220 26 1 1.6938 1.8773 -0.9173 27 1 1.6011 1.9129 0.8601 28 1 3.9179 2.3448 0.0512 29 1 3.8254 0.8481 1.0107 30 1 5.6049 -0.4905 0.7994 31 1 8.0659 -0.4958 0.7897 32 1 9.2939 0.5665 -1.0598 33 1 8.0657 1.6283 -2.9093 34 1 5.6047 1.6310 -2.9143 35 1 2.6376 -4.3934 -1.7748 36 1 1.6936 -0.2821 -2.0704 37 1 1.6013 -1.7790 -1.1114 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000221060256.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:55 Heat of formation + Delta-G solvation = 47.746783 kcal Electronic energy + Delta-G solvation = -18420.540164 eV Core-core repulsion = 15776.930751 eV Total energy + Delta-G solvation = -2643.609413 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.43484 -37.50192 -34.55740 -32.97584 -30.30836 -29.85379 -29.33643 -26.54745 -25.27519 -23.08378 -22.05676 -21.76786 -20.72040 -18.68734 -16.89360 -16.21013 -15.31286 -14.77176 -14.43698 -14.30573 -14.09242 -13.82676 -13.65632 -13.32379 -12.84944 -12.44877 -12.17955 -11.94571 -11.52534 -11.20613 -11.07547 -10.98597 -10.76182 -10.65821 -10.59801 -10.19488 -10.17154 -9.77620 -9.02601 -8.51933 -8.30095 -7.89254 -7.60765 -7.34689 -6.05892 -4.09834 1.99442 2.03802 3.29702 3.36128 3.41167 4.37930 4.40974 4.73941 4.82356 5.28694 5.47178 5.51837 5.63863 5.66889 5.75566 5.83668 5.97839 6.02432 6.06122 6.16783 6.19327 6.33721 6.38515 6.47100 6.64847 6.77315 6.84821 6.95952 7.06944 7.20702 7.23718 7.48987 7.59517 7.76272 7.85723 7.94132 8.15033 8.33517 8.55002 8.97801 9.55151 11.00882 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.014273 B = 0.012222 C = 0.007327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.338017 B = 2290.425571 C = 3820.403930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.550 5.550 3 C 0.061 3.939 4 C 0.064 3.936 5 N -0.513 5.513 6 C 0.145 3.855 7 C -0.142 4.142 8 C -0.115 4.115 9 C -0.143 4.143 10 C -0.121 4.121 11 C -0.104 4.104 12 C 0.229 3.771 13 H 0.014 0.986 14 C -0.503 4.503 15 H 0.065 0.935 16 C 0.063 3.937 17 N -0.891 5.891 18 Si 0.896 3.104 19 H -0.280 1.280 20 H -0.273 1.273 21 H -0.286 1.286 22 C 0.066 3.934 23 H 0.064 0.936 24 H 0.054 0.946 25 H 0.016 0.984 26 H 0.032 0.968 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.036 0.964 30 H 0.114 0.886 31 H 0.111 0.889 32 H 0.111 0.889 33 H 0.114 0.886 34 H 0.120 0.880 35 H 0.262 0.738 36 H 0.017 0.983 37 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.629 8.098 2.682 8.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.275 5.275 3 C -0.068 4.068 4 C -0.063 4.063 5 N -0.236 5.236 6 C 0.051 3.949 7 C -0.162 4.162 8 C -0.134 4.134 9 C -0.161 4.161 10 C -0.140 4.140 11 C -0.123 4.123 12 C 0.124 3.876 13 H 0.032 0.968 14 C -0.542 4.542 15 H 0.083 0.917 16 C -0.139 4.139 17 N -0.530 5.530 18 Si 0.723 3.277 19 H -0.206 1.206 20 H -0.198 1.198 21 H -0.212 1.212 22 C -0.061 4.061 23 H 0.083 0.917 24 H 0.073 0.927 25 H 0.034 0.966 26 H 0.051 0.949 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.054 0.946 30 H 0.132 0.868 31 H 0.129 0.871 32 H 0.129 0.871 33 H 0.132 0.868 34 H 0.138 0.862 35 H 0.072 0.928 36 H 0.035 0.965 37 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 2.495 7.904 2.714 8.722 hybrid contribution 0.220 -0.708 -0.841 1.121 sum 2.715 7.196 1.873 7.916 Atomic orbital electron populations 1.22241 0.88957 1.01595 0.98966 1.62331 1.06475 1.12512 1.46204 1.22052 0.94567 0.90653 0.99491 1.22069 0.94390 0.97476 0.92379 1.60038 1.03599 1.18851 1.41077 1.18692 0.89421 0.94083 0.92714 1.21656 0.94607 1.00180 0.99804 1.20895 0.94126 0.99835 0.98528 1.20924 0.98972 1.00797 0.95435 1.20939 0.94152 1.00574 0.98311 1.21003 0.93289 1.00012 0.98015 1.19353 0.90200 0.80909 0.97107 0.96813 1.21093 1.27811 0.95802 1.09537 0.91715 1.24911 0.95094 0.97354 0.96567 1.69870 1.34403 1.12353 1.36347 0.86520 0.79540 0.78865 0.82729 1.20647 1.19799 1.21231 1.22529 0.97155 0.98860 0.87605 0.91678 0.92739 0.96586 0.94932 0.91724 0.91739 0.94619 0.86753 0.87075 0.87118 0.86816 0.86163 0.92820 0.96460 0.87172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 9.60 60.07 0.58 1.11 16 2 N -0.55 -11.32 4.97 -242.75 -1.21 -12.53 16 3 C 0.06 1.11 5.62 -3.77 -0.02 1.09 16 4 C 0.06 1.21 5.35 -3.76 -0.02 1.19 16 5 N -0.51 -11.25 4.50 -164.73 -0.74 -12.00 16 6 C 0.15 3.02 3.51 -83.78 -0.29 2.72 16 7 C -0.14 -2.82 8.64 -39.38 -0.34 -3.16 16 8 C -0.12 -1.98 10.04 -39.61 -0.40 -2.37 16 9 C -0.14 -2.28 10.04 -39.55 -0.40 -2.68 16 10 C -0.12 -1.99 10.04 -39.61 -0.40 -2.39 16 11 C -0.10 -1.97 9.60 -39.38 -0.38 -2.35 16 12 C 0.23 5.77 1.67 -68.81 -0.11 5.66 16 13 H 0.01 0.40 7.26 -51.93 -0.38 0.02 16 14 C -0.50 -13.77 8.06 -34.44 -0.28 -14.04 16 15 H 0.06 1.81 6.98 -52.48 -0.37 1.44 16 16 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 17 N -0.89 -25.03 11.34 55.43 0.63 -24.41 16 18 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 C 0.07 1.59 4.66 -3.77 -0.02 1.57 16 23 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 24 H 0.05 0.79 8.13 -51.93 -0.42 0.37 16 25 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 26 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 1.00 8.13 -51.93 -0.42 0.57 16 28 H 0.06 1.08 8.13 -51.93 -0.42 0.66 16 29 H 0.04 0.69 7.42 -51.93 -0.39 0.31 16 30 H 0.11 2.33 7.06 -52.49 -0.37 1.96 16 31 H 0.11 1.63 8.06 -52.49 -0.42 1.20 16 32 H 0.11 1.44 8.06 -52.49 -0.42 1.01 16 33 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 34 H 0.12 2.20 8.06 -52.49 -0.42 1.77 16 35 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 36 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.11 2.94 6.12 -51.93 -0.32 2.62 16 LS Contribution 296.14 15.07 4.46 4.46 Total: -1.00 -28.73 296.14 -9.65 -38.39 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -5.60 Total: 1.67 kcal Atomic # 6 Polarization: -9.87 SS G_CDS: -2.17 Total: -12.04 kcal Atomic # 7 Polarization: -47.61 SS G_CDS: -1.32 Total: -48.93 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -28.73 -9.65 -38.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221060256.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.132 kcal (2) G-P(sol) polarization free energy of solvation -28.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds