Wall clock time and date at job start Mon Mar 30 2020 04:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46949 * 111.00162 * 2 1 4 4 C 1.53054 * 109.36485 * 176.81387 * 3 2 1 5 5 N 1.46960 * 109.36123 * 58.40462 * 4 3 2 6 6 C 1.39680 * 110.99563 * 176.81240 * 5 4 3 7 7 C 1.38909 * 120.07314 * 63.40511 * 6 5 4 8 8 C 1.38112 * 119.92170 * 179.76969 * 7 6 5 9 9 C 1.38285 * 120.07353 * 0.50256 * 8 7 6 10 10 C 1.38285 * 120.14970 * 359.74793 * 9 8 7 11 11 C 1.38102 * 120.07661 * 0.02562 * 10 9 8 12 12 C 1.46959 * 110.88002 * 300.67715 * 5 4 3 13 13 H 1.08999 * 109.50403 * 299.34884 * 12 5 4 14 14 C 1.50697 * 109.49016 * 179.29278 * 12 5 4 15 15 H 1.08005 * 120.00000 * 0.10986 * 14 12 5 16 16 C 1.37870 * 119.99978 * 180.10827 * 14 12 5 17 17 N 1.31512 * 120.00110 * 0.02562 * 16 14 12 18 18 Si 1.86806 * 119.99856 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47151 * 270.00353 * 18 16 14 20 20 H 1.48497 * 109.46995 * 30.00546 * 18 16 14 21 21 H 1.48502 * 109.46836 * 150.00021 * 18 16 14 22 22 C 1.46961 * 110.99766 * 236.20252 * 2 1 3 23 23 H 1.08996 * 109.47161 * 183.79809 * 1 2 3 24 24 H 1.09007 * 109.46418 * 303.79535 * 1 2 3 25 25 H 1.08997 * 109.47315 * 63.79668 * 1 2 3 26 26 H 1.09000 * 109.48967 * 296.78274 * 3 2 1 27 27 H 1.09005 * 109.49126 * 56.82562 * 3 2 1 28 28 H 1.09006 * 109.48869 * 178.36780 * 4 3 2 29 29 H 1.08998 * 109.48882 * 298.41322 * 4 3 2 30 30 H 1.07996 * 120.04373 * 359.97438 * 7 6 5 31 31 H 1.08000 * 119.96157 * 180.25581 * 8 7 6 32 32 H 1.07999 * 119.92836 * 179.77367 * 9 8 7 33 33 H 1.08001 * 119.96669 * 180.02562 * 10 9 8 34 34 H 1.08002 * 120.03888 * 180.02562 * 11 10 9 35 35 H 0.97005 * 119.99916 * 179.97438 * 17 16 14 36 36 H 1.09000 * 109.48775 * 63.21456 * 22 2 1 37 37 H 1.09007 * 109.50380 * 303.16600 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9957 1.3719 0.0000 4 6 3.5235 1.3290 0.0803 5 7 4.0501 0.5658 -1.0600 6 6 5.4468 0.5658 -1.0600 7 6 6.1429 -0.0282 -0.0149 8 6 7.5240 -0.0306 -0.0204 9 6 8.2139 0.5665 -1.0596 10 6 7.5240 1.1632 -2.0990 11 6 6.1430 1.1651 -2.1020 12 6 3.5234 -0.8062 -1.0600 13 1 3.8253 -1.3119 -0.1428 14 6 4.0685 -1.5540 -2.2493 15 1 4.7406 -1.0605 -2.9358 16 6 3.7093 -2.8681 -2.4611 17 7 2.8906 -3.4689 -1.6255 18 14 4.3845 -3.7949 -3.9359 19 1 3.4702 -3.6181 -5.0926 20 1 5.7278 -3.2644 -4.2811 21 1 4.4923 -5.2388 -3.6061 22 6 1.9956 -0.7632 -1.1402 23 1 -0.3633 -1.0254 0.0681 24 1 -0.3632 0.5717 0.8541 25 1 -0.3634 0.4538 -0.9220 26 1 1.6938 1.8773 -0.9173 27 1 1.6011 1.9129 0.8601 28 1 3.9179 2.3448 0.0512 29 1 3.8254 0.8481 1.0107 30 1 5.6049 -0.4905 0.7994 31 1 8.0659 -0.4958 0.7897 32 1 9.2939 0.5665 -1.0598 33 1 8.0657 1.6283 -2.9093 34 1 5.6047 1.6310 -2.9143 35 1 2.6376 -4.3934 -1.7748 36 1 1.6936 -0.2821 -2.0704 37 1 1.6013 -1.7790 -1.1114 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000221060256.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:55 Heat of formation + Delta-G solvation = 29.305740 kcal Electronic energy + Delta-G solvation = -18421.339827 eV Core-core repulsion = 15776.930751 eV Total energy + Delta-G solvation = -2644.409076 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.00582 -39.01918 -36.13734 -34.97706 -31.70103 -31.53076 -30.96644 -28.06114 -27.24621 -24.62877 -23.72178 -23.30788 -22.22265 -20.39029 -18.65217 -17.95590 -16.98911 -16.47646 -15.93635 -15.87451 -15.67656 -15.56420 -15.32402 -14.79731 -14.32989 -14.11670 -13.85666 -13.39223 -13.01704 -12.89221 -12.77432 -12.58988 -12.51715 -12.29478 -12.14549 -12.02907 -11.94535 -11.50476 -10.97312 -10.58792 -9.70390 -9.35151 -9.25890 -9.07016 -8.14776 -6.25902 0.58481 0.63335 1.38870 1.39338 1.50095 2.39131 2.98741 3.07654 3.18697 3.31926 4.09918 4.18692 4.22558 4.28646 4.34624 4.37478 4.54522 4.61609 4.66728 4.69494 4.77331 4.82329 4.94235 4.96688 4.99386 5.06823 5.26856 5.34310 5.51075 5.61778 5.66767 5.70831 5.87542 6.04058 6.14441 6.21588 6.33022 6.53594 6.74272 6.93669 7.42491 8.91069 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.014273 B = 0.012222 C = 0.007327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.338017 B = 2290.425571 C = 3820.403930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.565 5.565 3 C 0.063 3.937 4 C 0.063 3.937 5 N -0.517 5.517 6 C 0.114 3.886 7 C -0.165 4.165 8 C -0.117 4.117 9 C -0.135 4.135 10 C -0.115 4.115 11 C -0.121 4.121 12 C 0.241 3.759 13 H -0.029 1.029 14 C -0.516 4.516 15 H 0.054 0.946 16 C 0.017 3.983 17 N -0.915 5.915 18 Si 0.955 3.045 19 H -0.273 1.273 20 H -0.272 1.272 21 H -0.282 1.282 22 C 0.082 3.918 23 H 0.057 0.943 24 H 0.087 0.913 25 H 0.021 0.979 26 H 0.032 0.968 27 H 0.101 0.899 28 H 0.089 0.911 29 H 0.025 0.975 30 H 0.093 0.907 31 H 0.136 0.864 32 H 0.151 0.849 33 H 0.149 0.851 34 H 0.120 0.880 35 H 0.263 0.737 36 H 0.000 1.000 37 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.993 9.309 2.272 10.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.290 5.290 3 C -0.065 4.065 4 C -0.064 4.064 5 N -0.240 5.240 6 C 0.020 3.980 7 C -0.185 4.185 8 C -0.136 4.136 9 C -0.153 4.153 10 C -0.133 4.133 11 C -0.140 4.140 12 C 0.135 3.865 13 H -0.012 1.012 14 C -0.555 4.555 15 H 0.072 0.928 16 C -0.182 4.182 17 N -0.555 5.555 18 Si 0.781 3.219 19 H -0.199 1.199 20 H -0.196 1.196 21 H -0.207 1.207 22 C -0.046 4.046 23 H 0.076 0.924 24 H 0.106 0.894 25 H 0.039 0.961 26 H 0.050 0.950 27 H 0.119 0.881 28 H 0.107 0.893 29 H 0.043 0.957 30 H 0.111 0.889 31 H 0.154 0.846 32 H 0.169 0.831 33 H 0.167 0.833 34 H 0.138 0.862 35 H 0.072 0.928 36 H 0.018 0.982 37 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 3.857 9.139 2.313 10.185 hybrid contribution -0.142 -1.026 -0.658 1.227 sum 3.715 8.113 1.654 9.075 Atomic orbital electron populations 1.22307 0.86707 1.01921 1.00656 1.62258 1.08659 1.13887 1.44205 1.22158 0.93917 0.89403 1.01015 1.22187 0.95162 0.98074 0.90988 1.59994 1.04850 1.16790 1.42353 1.18906 0.88947 0.96087 0.94059 1.21628 0.96063 1.01363 0.99477 1.21232 0.93042 0.99531 0.99800 1.21390 1.00963 0.98834 0.94111 1.21358 0.93136 0.99567 0.99250 1.21163 0.94723 1.00566 0.97511 1.19000 0.90816 0.82459 0.94242 1.01175 1.21278 1.27803 0.96430 1.09981 0.92773 1.25644 0.95379 0.98147 0.99029 1.70001 1.35222 1.12523 1.37741 0.85592 0.78894 0.77665 0.79774 1.19909 1.19650 1.20707 1.22099 0.96606 0.97703 0.88222 0.92415 0.89402 0.96082 0.94980 0.88107 0.89317 0.95718 0.88879 0.84648 0.83133 0.83287 0.86203 0.92792 0.98208 0.90170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.07 9.60 127.69 1.23 2.30 16 2 N -0.57 -23.40 4.97 -921.93 -4.58 -27.98 16 3 C 0.06 2.23 5.62 86.31 0.49 2.71 16 4 C 0.06 2.38 5.35 86.31 0.46 2.84 16 5 N -0.52 -23.31 4.50 -675.08 -3.04 -26.35 16 6 C 0.11 4.81 3.51 38.21 0.13 4.94 16 7 C -0.17 -6.68 8.64 22.40 0.19 -6.49 16 8 C -0.12 -3.86 10.04 22.25 0.22 -3.64 16 9 C -0.14 -3.86 10.04 22.29 0.22 -3.63 16 10 C -0.11 -3.45 10.04 22.25 0.22 -3.23 16 11 C -0.12 -4.48 9.60 22.40 0.22 -4.27 16 12 C 0.24 12.68 1.67 44.17 0.07 12.76 16 13 H -0.03 -1.76 7.26 -2.39 -0.02 -1.78 16 14 C -0.52 -29.16 8.06 25.60 0.21 -28.96 16 15 H 0.05 3.11 6.98 -2.91 -0.02 3.09 16 16 C 0.02 0.97 5.30 84.65 0.45 1.42 16 17 N -0.92 -53.18 11.34 21.44 0.24 -52.93 16 18 Si 0.96 44.58 29.54 68.60 2.03 46.60 16 19 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 20 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 21 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 22 C 0.08 4.13 4.66 86.31 0.40 4.53 16 23 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 24 H 0.09 2.35 8.13 -2.38 -0.02 2.33 16 25 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.10 2.83 8.13 -2.38 -0.02 2.81 16 28 H 0.09 2.90 8.13 -2.38 -0.02 2.88 16 29 H 0.02 0.98 7.42 -2.39 -0.02 0.97 16 30 H 0.09 4.05 7.06 -2.91 -0.02 4.03 16 31 H 0.14 3.68 8.06 -2.91 -0.02 3.66 16 32 H 0.15 3.12 8.06 -2.91 -0.02 3.09 16 33 H 0.15 3.39 8.06 -2.91 -0.02 3.36 16 34 H 0.12 4.34 8.06 -2.91 -0.02 4.31 16 35 H 0.26 14.50 8.31 -92.70 -0.77 13.73 16 36 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 37 H 0.08 4.50 6.12 -2.38 -0.01 4.48 16 Total: -1.00 -64.49 296.14 0.20 -64.29 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: 1.03 Total: 15.08 kcal Atomic # 6 Polarization: -23.23 SS G_CDS: 4.52 Total: -18.71 kcal Atomic # 7 Polarization: -99.89 SS G_CDS: -7.38 Total: -107.26 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.60 kcal Total: -64.49 0.20 -64.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221060256.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.599 kcal (2) G-P(sol) polarization free energy of solvation -64.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds