Wall clock time and date at job start Mon Mar 30 2020 03:41:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 120.00100 * 2 1 4 4 H 1.48505 * 109.47324 * 269.99846 * 3 2 1 5 5 H 1.48508 * 109.47184 * 29.99994 * 3 2 1 6 6 H 1.48503 * 109.47016 * 149.99821 * 3 2 1 7 7 C 1.37879 * 119.99997 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99224 * 359.73025 * 7 2 1 9 9 C 1.50696 * 120.00004 * 180.02562 * 7 2 1 10 10 H 1.08992 * 109.73130 * 60.65663 * 9 7 2 11 11 C 1.50779 * 109.73346 * 181.35477 * 9 7 2 12 12 N 1.47751 * 111.91581 * 214.25834 * 11 9 7 13 13 C 1.39674 * 110.99908 * 84.93998 * 12 11 9 14 14 C 1.38911 * 120.07627 * 227.24616 * 13 12 11 15 15 C 1.38096 * 119.92607 * 179.76553 * 14 13 12 16 16 C 1.38283 * 120.07509 * 0.51470 * 15 14 13 17 17 C 1.38284 * 120.15254 * 359.73599 * 16 15 14 18 18 C 1.38111 * 120.06980 * 0.02562 * 17 16 15 19 19 C 1.48068 * 113.78657 * 318.87532 * 12 11 9 20 20 C 1.50740 * 112.93364 * 318.28492 * 19 12 11 21 21 C 1.54515 * 108.94233 * 92.65690 * 20 19 12 22 22 N 1.40082 * 111.51331 * 283.98122 * 21 20 19 23 23 H 0.97003 * 120.00153 * 0.02562 * 1 2 3 24 24 H 1.08999 * 108.99605 * 334.88740 * 11 9 7 25 25 H 1.08996 * 108.99180 * 93.62997 * 11 9 7 26 26 H 1.08009 * 120.03360 * 0.02562 * 14 13 12 27 27 H 1.08000 * 119.96357 * 180.25262 * 15 14 13 28 28 H 1.08005 * 119.92795 * 179.76636 * 16 15 14 29 29 H 1.07994 * 119.96629 * 180.02562 * 17 16 15 30 30 H 1.08001 * 120.03672 * 180.02562 * 18 17 16 31 31 H 1.08997 * 108.78597 * 197.39134 * 19 12 11 32 32 H 1.09002 * 108.78865 * 79.17494 * 19 12 11 33 33 H 1.08998 * 109.56477 * 332.81763 * 20 19 12 34 34 H 1.09007 * 109.64737 * 212.54507 * 20 19 12 35 35 H 1.08992 * 109.07064 * 163.45186 * 21 20 19 36 36 H 1.09003 * 109.01399 * 44.46669 * 21 20 19 37 37 H 1.00897 * 111.00137 * 294.75095 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1293 0.0054 9 6 3.5115 -1.1941 0.0011 10 1 3.8791 -0.6911 0.8954 11 6 4.0206 -2.6129 -0.0319 12 7 5.2729 -2.7675 0.7368 13 6 5.0058 -2.9800 2.0912 14 6 5.6946 -2.2587 3.0581 15 6 5.4246 -2.4678 4.3962 16 6 4.4775 -3.4017 4.7743 17 6 3.7937 -4.1253 3.8146 18 6 4.0553 -3.9176 2.4745 19 6 6.2281 -1.6512 0.5531 20 6 6.3247 -1.1904 -0.8790 21 6 5.3272 -0.0316 -1.1014 22 7 4.0107 -0.4993 -1.2027 23 1 -0.4850 0.8401 -0.0004 24 1 3.2618 -3.2720 0.3899 25 1 4.2022 -2.9006 -1.0674 26 1 6.4374 -1.5320 2.7635 27 1 5.9568 -1.9043 5.1483 28 1 4.2709 -3.5660 5.8216 29 1 3.0543 -4.8536 4.1133 30 1 3.5206 -4.4828 1.7254 31 1 7.2145 -1.9749 0.8851 32 1 5.9101 -0.8117 1.1713 33 1 6.0785 -2.0168 -1.5457 34 1 7.3377 -0.8446 -1.0852 35 1 5.5904 0.4935 -2.0195 36 1 5.3954 0.6616 -0.2629 37 1 3.8925 -1.0713 -2.0255 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000221060388.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:25 Heat of formation + Delta-G solvation = 28.627570 kcal Electronic energy + Delta-G solvation = -18571.669483 eV Core-core repulsion = 15927.230999 eV Total energy + Delta-G solvation = -2644.438484 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.49564 -39.25085 -36.12384 -34.95956 -33.28776 -31.73911 -30.86255 -28.59392 -27.01538 -25.58275 -23.24408 -22.75167 -22.06508 -20.62222 -19.36054 -18.38190 -16.90551 -16.79228 -16.45014 -16.06798 -15.75808 -15.54050 -15.22211 -14.89754 -14.58759 -14.41611 -13.76816 -13.44155 -13.26368 -12.96953 -12.76545 -12.64429 -12.46806 -12.25517 -12.10328 -11.91325 -11.65050 -11.60605 -11.22742 -10.77622 -10.54176 -9.79922 -9.11467 -8.52532 -8.24959 -6.37407 0.53253 0.54768 1.42475 1.49182 1.59006 2.47139 2.66134 3.03073 3.09585 3.68783 3.88375 3.90322 4.04631 4.11545 4.27976 4.31064 4.36398 4.42538 4.55097 4.62002 4.62953 4.73760 4.78051 4.84651 4.93987 5.01950 5.14929 5.22680 5.26680 5.38822 5.52949 5.60355 5.69082 5.92614 6.08080 6.18694 6.39209 6.52328 6.78829 6.96121 7.39118 8.86451 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.020245 B = 0.009676 C = 0.007889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.736096 B = 2893.064323 C = 3548.594137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.032 3.968 3 Si 0.991 3.009 4 H -0.271 1.271 5 H -0.324 1.324 6 H -0.269 1.269 7 C -0.512 4.512 8 H 0.037 0.963 9 C 0.187 3.813 10 H 0.021 0.979 11 C 0.053 3.947 12 N -0.499 5.499 13 C 0.107 3.893 14 C -0.191 4.191 15 C -0.099 4.099 16 C -0.160 4.160 17 C -0.101 4.101 18 C -0.166 4.166 19 C 0.055 3.945 20 C -0.154 4.154 21 C 0.064 3.936 22 N -0.709 5.709 23 H 0.263 0.737 24 H 0.066 0.934 25 H 0.078 0.922 26 H 0.132 0.868 27 H 0.145 0.855 28 H 0.145 0.855 29 H 0.139 0.861 30 H 0.115 0.885 31 H 0.089 0.911 32 H 0.033 0.967 33 H 0.071 0.929 34 H 0.101 0.899 35 H 0.085 0.915 36 H 0.045 0.955 37 H 0.346 0.654 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.860 -3.867 4.140 15.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.167 4.167 3 Si 0.822 3.178 4 H -0.196 1.196 5 H -0.254 1.254 6 H -0.194 1.194 7 C -0.551 4.551 8 H 0.055 0.945 9 C 0.079 3.921 10 H 0.039 0.961 11 C -0.074 4.074 12 N -0.214 5.214 13 C 0.008 3.992 14 C -0.212 4.212 15 C -0.117 4.117 16 C -0.179 4.179 17 C -0.120 4.120 18 C -0.186 4.186 19 C -0.070 4.070 20 C -0.194 4.194 21 C -0.067 4.067 22 N -0.342 5.342 23 H 0.072 0.928 24 H 0.084 0.916 25 H 0.096 0.904 26 H 0.150 0.850 27 H 0.163 0.837 28 H 0.163 0.837 29 H 0.157 0.843 30 H 0.133 0.867 31 H 0.108 0.892 32 H 0.051 0.949 33 H 0.090 0.910 34 H 0.119 0.881 35 H 0.104 0.896 36 H 0.063 0.937 37 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 14.727 -3.582 4.038 15.685 hybrid contribution -0.228 0.476 0.035 0.529 sum 14.499 -3.106 4.073 15.377 Atomic orbital electron populations 1.70080 1.08348 1.27988 1.52064 1.25755 0.95053 1.03279 0.92663 0.85029 0.77289 0.77405 0.78126 1.19648 1.25422 1.19444 1.21108 0.90270 0.92877 1.50875 0.94466 1.19399 0.93484 0.90217 0.88956 0.96146 1.22732 0.88096 0.98503 0.98032 1.59285 1.14107 1.41310 1.06650 1.19207 0.95560 0.95527 0.88885 1.21405 1.04442 1.01625 0.93690 1.21307 0.97472 0.97517 0.95404 1.21349 0.98068 0.98132 1.00345 1.21279 0.99044 0.99520 0.92113 1.20986 0.99916 1.00466 0.97266 1.22108 0.95654 0.90949 0.98318 1.22389 1.02256 0.99595 0.95208 1.21221 0.87206 0.96334 1.01984 1.57797 1.21889 1.47657 1.06893 0.92784 0.91576 0.90390 0.85020 0.83682 0.83713 0.84296 0.86652 0.89239 0.94923 0.91022 0.88061 0.89644 0.93685 0.83223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.53 13.96 21.45 0.30 -59.23 16 2 C 0.03 1.87 5.47 84.66 0.46 2.33 16 3 Si 0.99 49.44 25.87 68.60 1.77 51.22 16 4 H -0.27 -13.09 7.11 99.48 0.71 -12.39 16 5 H -0.32 -16.42 7.11 99.48 0.71 -15.71 16 6 H -0.27 -12.86 5.90 99.48 0.59 -12.28 16 7 C -0.51 -28.86 9.25 25.60 0.24 -28.62 16 8 H 0.04 2.31 7.70 -2.91 -0.02 2.28 16 9 C 0.19 8.43 1.40 43.30 0.06 8.50 16 10 H 0.02 1.02 5.73 -2.39 -0.01 1.00 16 11 C 0.05 2.06 4.66 85.42 0.40 2.46 16 12 N -0.50 -17.13 4.81 -698.43 -3.36 -20.49 16 13 C 0.11 3.75 5.56 38.21 0.21 3.96 16 14 C -0.19 -5.94 8.78 22.40 0.20 -5.74 16 15 C -0.10 -2.66 10.04 22.25 0.22 -2.44 16 16 C -0.16 -4.24 10.04 22.29 0.22 -4.02 16 17 C -0.10 -2.99 10.04 22.25 0.22 -2.77 16 18 C -0.17 -5.75 8.94 22.40 0.20 -5.55 16 19 C 0.06 1.63 3.73 85.34 0.32 1.95 16 20 C -0.15 -4.00 5.67 30.38 0.17 -3.83 16 21 C 0.06 2.02 5.82 88.05 0.51 2.53 16 22 N -0.71 -27.99 3.65 -509.57 -1.86 -29.85 16 23 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 24 H 0.07 2.81 5.14 -2.39 -0.01 2.80 16 25 H 0.08 2.82 6.73 -2.39 -0.02 2.80 16 26 H 0.13 3.68 5.81 -2.91 -0.02 3.66 16 27 H 0.15 2.97 8.06 -2.91 -0.02 2.95 16 28 H 0.15 2.90 8.06 -2.91 -0.02 2.88 16 29 H 0.14 3.40 8.06 -2.91 -0.02 3.38 16 30 H 0.12 4.04 6.75 -2.91 -0.02 4.02 16 31 H 0.09 2.25 7.82 -2.39 -0.02 2.23 16 32 H 0.03 1.07 5.11 -2.39 -0.01 1.06 16 33 H 0.07 1.90 7.19 -2.39 -0.02 1.88 16 34 H 0.10 2.00 8.14 -2.38 -0.02 1.98 16 35 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 36 H 0.04 1.56 6.93 -2.39 -0.02 1.54 16 37 H 0.35 12.70 8.15 -89.70 -0.73 11.97 16 Total: -1.00 -66.85 279.64 0.52 -66.34 By element: Atomic # 1 Polarization: 23.05 SS G_CDS: 0.23 Total: 23.27 kcal Atomic # 6 Polarization: -34.69 SS G_CDS: 3.44 Total: -31.25 kcal Atomic # 7 Polarization: -104.66 SS G_CDS: -4.92 Total: -109.58 kcal Atomic # 14 Polarization: 49.44 SS G_CDS: 1.77 Total: 51.22 kcal Total: -66.85 0.52 -66.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221060388.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.963 kcal (2) G-P(sol) polarization free energy of solvation -66.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds