Wall clock time and date at job start Mon Mar 30 2020 04:07:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47209 * 2 1 4 4 C 1.50699 * 109.47235 * 119.99552 * 2 1 3 5 5 H 1.08000 * 119.99841 * 24.83630 * 4 2 1 6 6 C 1.37880 * 120.00329 * 204.82925 * 4 2 1 7 7 N 1.31518 * 119.99953 * 352.14141 * 6 4 2 8 8 Si 1.86801 * 120.00236 * 172.14246 * 6 4 2 9 9 H 1.48505 * 109.46881 * 90.00292 * 8 6 4 10 10 H 1.48493 * 109.47081 * 330.00378 * 8 6 4 11 11 H 1.48495 * 109.47062 * 209.99924 * 8 6 4 12 12 N 1.46896 * 109.47518 * 239.99773 * 2 1 3 13 13 C 1.46421 * 111.00211 * 300.29350 * 12 2 1 14 14 C 1.53377 * 108.66601 * 178.83151 * 13 12 2 15 15 H 1.08994 * 109.77576 * 51.39073 * 14 13 12 16 16 N 1.46899 * 109.77200 * 172.12445 * 14 13 12 17 17 C 1.53047 * 107.91950 * 291.73014 * 14 13 12 18 18 C 1.50799 * 109.64622 * 47.31940 * 17 14 13 19 19 C 1.38613 * 118.12468 * 164.50648 * 18 17 14 20 20 C 1.38047 * 120.49200 * 179.71297 * 19 18 17 21 21 C 1.38314 * 119.89051 * 359.97438 * 20 19 18 22 22 C 1.37815 * 119.94906 * 0.14771 * 21 20 19 23 23 C 1.38374 * 122.01540 * 344.45884 * 18 17 14 24 24 H 1.09004 * 109.46794 * 186.19972 * 1 2 3 25 25 H 1.09000 * 109.46903 * 306.19508 * 1 2 3 26 26 H 1.08997 * 109.46959 * 66.19900 * 1 2 3 27 27 H 0.97001 * 120.00036 * 2.16263 * 7 6 4 28 28 H 1.09004 * 109.60554 * 298.58848 * 13 12 2 29 29 H 1.09010 * 109.60489 * 58.91094 * 13 12 2 30 30 H 1.00897 * 111.00616 * 179.97438 * 16 14 13 31 31 H 1.00902 * 111.00401 * 303.95606 * 16 14 13 32 32 H 1.08994 * 109.44440 * 167.37525 * 17 14 13 33 33 H 1.09004 * 109.43795 * 287.30257 * 17 14 13 34 34 H 1.08001 * 119.75260 * 359.73271 * 19 18 17 35 35 H 1.08000 * 120.06082 * 179.97438 * 20 19 18 36 36 H 1.07995 * 120.03014 * 180.16479 * 21 20 19 37 37 H 1.07996 * 119.79262 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 1.4120 -1.4465 1.7201 6 6 3.2838 -0.4204 1.7313 7 7 4.0994 0.3574 1.0534 8 14 3.8211 -1.1325 3.3726 9 1 4.4859 -2.4416 3.1503 10 1 2.6327 -1.3221 4.2426 11 1 4.7717 -0.1997 4.0294 12 7 2.0197 -0.6925 -1.1993 13 6 1.5446 -2.0770 -1.2367 14 6 2.0610 -2.7387 -2.5204 15 1 3.1373 -2.5893 -2.6050 16 7 1.7596 -4.1762 -2.4944 17 6 1.3512 -2.0823 -3.7069 18 6 1.3920 -0.5825 -3.5555 19 6 1.1005 0.1944 -4.6658 20 6 1.1175 1.5722 -4.5807 21 6 1.4269 2.1848 -3.3798 22 6 1.7203 1.4190 -2.2723 23 6 1.7075 0.0251 -2.3531 24 1 -0.3633 -1.0217 0.1110 25 1 -0.3633 0.6069 0.8293 26 1 -0.3633 0.4147 -0.9402 27 1 3.8091 0.7524 0.2164 28 1 1.9232 -2.6171 -0.3689 29 1 0.4546 -2.0900 -1.2285 30 1 2.0915 -4.6306 -3.3319 31 1 2.1447 -4.6116 -1.6696 32 1 1.8520 -2.3673 -4.6321 33 1 0.3138 -2.4153 -3.7384 34 1 0.8579 -0.2816 -5.6044 35 1 0.8897 2.1708 -5.4503 36 1 1.4383 3.2624 -3.3100 37 1 1.9611 1.8999 -1.3358 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226363999.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:08 Heat of formation + Delta-G solvation = 7.582730 kcal Electronic energy + Delta-G solvation = -18571.543139 eV Core-core repulsion = 15926.192083 eV Total energy + Delta-G solvation = -2645.351057 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.61080 -38.13282 -37.02730 -34.50121 -32.94701 -31.52035 -30.30455 -28.89516 -26.72353 -25.98646 -23.84295 -23.25636 -21.76868 -20.16315 -18.76344 -18.11150 -17.06067 -16.78102 -16.03529 -15.78617 -15.64520 -15.60893 -15.02141 -14.68324 -14.44019 -14.24479 -13.79511 -13.63912 -13.50079 -12.94510 -12.91608 -12.64554 -12.43128 -12.29277 -12.08538 -11.92250 -11.60038 -11.37635 -10.73321 -10.61373 -10.36061 -9.74542 -9.57548 -8.63295 -8.29099 -6.36183 0.52961 0.65283 1.52548 1.60203 1.78088 2.55359 2.78653 3.04743 3.33876 3.61792 3.79740 3.92835 4.04446 4.13875 4.30918 4.36351 4.46438 4.49367 4.58181 4.62464 4.66857 4.74534 4.83428 4.94986 4.98302 5.09624 5.14676 5.16899 5.33981 5.45972 5.64209 5.72545 5.87272 6.09424 6.14477 6.17938 6.47882 6.54798 6.59907 6.84843 7.48993 8.77957 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.022436 B = 0.008885 C = 0.007149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.679257 B = 3150.662081 C = 3915.511282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.191 3.809 3 H 0.032 0.968 4 C -0.601 4.601 5 H 0.046 0.954 6 C -0.015 4.015 7 N -0.920 5.920 8 Si 1.114 2.886 9 H -0.278 1.278 10 H -0.270 1.270 11 H -0.285 1.285 12 N -0.497 5.497 13 C 0.088 3.912 14 C 0.094 3.906 15 H 0.023 0.977 16 N -0.836 5.836 17 C -0.054 4.054 18 C -0.162 4.162 19 C -0.088 4.088 20 C -0.167 4.167 21 C -0.097 4.097 22 C -0.195 4.195 23 C 0.124 3.876 24 H 0.045 0.955 25 H 0.054 0.946 26 H 0.039 0.961 27 H 0.264 0.736 28 H 0.062 0.938 29 H 0.035 0.965 30 H 0.355 0.645 31 H 0.347 0.653 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.147 0.853 35 H 0.149 0.851 36 H 0.135 0.865 37 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.643 -3.435 -10.270 12.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.089 3.911 3 H 0.050 0.950 4 C -0.639 4.639 5 H 0.064 0.936 6 C -0.217 4.217 7 N -0.555 5.555 8 Si 0.936 3.064 9 H -0.204 1.204 10 H -0.195 1.195 11 H -0.210 1.210 12 N -0.208 5.208 13 C -0.039 4.039 14 C -0.018 4.018 15 H 0.041 0.959 16 N -0.368 5.368 17 C -0.091 4.091 18 C -0.166 4.166 19 C -0.106 4.106 20 C -0.186 4.186 21 C -0.116 4.116 22 C -0.216 4.216 23 C 0.022 3.978 24 H 0.064 0.936 25 H 0.073 0.927 26 H 0.058 0.942 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.053 0.947 30 H 0.169 0.831 31 H 0.160 0.840 32 H 0.108 0.892 33 H 0.100 0.900 34 H 0.165 0.835 35 H 0.166 0.834 36 H 0.153 0.847 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -4.643 -3.366 -9.045 10.709 hybrid contribution -0.593 0.255 -0.747 0.987 sum -5.236 -3.111 -9.792 11.532 Atomic orbital electron populations 1.22165 0.97984 1.00652 0.99955 1.19565 0.90487 0.94435 0.86636 0.94995 1.22066 1.04368 1.26553 1.10926 0.93606 1.27157 0.93374 0.95482 1.05706 1.70803 1.37178 1.31170 1.16376 0.82979 0.76000 0.75784 0.71633 1.20358 1.19502 1.21044 1.58702 1.56659 1.03293 1.02163 1.21671 0.96954 0.87661 0.97631 1.21257 0.96316 0.89225 0.94964 0.95918 1.58611 1.68069 1.01418 1.08722 1.20399 1.01496 0.89505 0.97748 1.19743 1.07034 0.96444 0.93395 1.21185 0.97931 0.93937 0.97544 1.21180 1.04594 0.94815 0.98010 1.21141 0.97848 1.00091 0.92497 1.21215 1.07643 0.92955 0.99768 1.19262 0.93780 0.92914 0.91825 0.93561 0.92719 0.94233 0.92568 0.91948 0.94652 0.83140 0.83953 0.89211 0.89959 0.83488 0.83363 0.84703 0.88431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.55 8.41 71.98 0.61 -5.94 16 2 C 0.19 9.63 1.42 44.17 0.06 9.70 16 3 H 0.03 1.77 4.65 -2.39 -0.01 1.76 16 4 C -0.60 -32.89 7.13 25.60 0.18 -32.70 16 5 H 0.05 2.50 7.82 -2.91 -0.02 2.47 16 6 C -0.02 -0.84 5.44 84.65 0.46 -0.38 16 7 N -0.92 -55.83 13.62 21.45 0.29 -55.53 16 8 Si 1.11 49.66 29.91 68.60 2.05 51.71 16 9 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 10 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 11 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 12 N -0.50 -23.34 4.47 -676.13 -3.03 -26.37 16 13 C 0.09 3.68 4.38 86.52 0.38 4.06 16 14 C 0.09 3.21 3.47 45.06 0.16 3.36 16 15 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 16 N -0.84 -22.30 9.27 -168.09 -1.56 -23.86 16 17 C -0.05 -1.62 5.42 29.90 0.16 -1.46 16 18 C -0.16 -5.67 5.74 -19.71 -0.11 -5.78 16 19 C -0.09 -2.51 9.63 22.31 0.21 -2.30 16 20 C -0.17 -4.65 10.05 22.24 0.22 -4.43 16 21 C -0.10 -3.19 10.04 22.19 0.22 -2.97 16 22 C -0.19 -8.03 8.44 22.50 0.19 -7.84 16 23 C 0.12 5.23 4.85 38.30 0.19 5.41 16 24 H 0.05 1.98 6.72 -2.38 -0.02 1.97 16 25 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 26 H 0.04 1.64 6.85 -2.39 -0.02 1.63 16 27 H 0.26 16.43 6.86 -92.71 -0.64 15.79 16 28 H 0.06 2.88 7.15 -2.39 -0.02 2.86 16 29 H 0.04 1.49 6.35 -2.38 -0.02 1.48 16 30 H 0.35 7.38 9.05 -89.70 -0.81 6.57 16 31 H 0.35 9.03 9.00 -89.69 -0.81 8.22 16 32 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.08 2.38 8.14 -2.38 -0.02 2.36 16 34 H 0.15 3.14 8.06 -2.91 -0.02 3.12 16 35 H 0.15 3.03 8.06 -2.91 -0.02 3.01 16 36 H 0.14 3.69 8.06 -2.91 -0.02 3.67 16 37 H 0.10 4.49 5.76 -2.91 -0.02 4.47 16 Total: -1.00 -64.43 289.95 0.29 -64.14 By element: Atomic # 1 Polarization: 31.58 SS G_CDS: -0.40 Total: 31.19 kcal Atomic # 6 Polarization: -44.21 SS G_CDS: 2.93 Total: -41.28 kcal Atomic # 7 Polarization: -101.47 SS G_CDS: -4.29 Total: -105.76 kcal Atomic # 14 Polarization: 49.66 SS G_CDS: 2.05 Total: 51.71 kcal Total: -64.43 0.29 -64.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226363999.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.721 kcal (2) G-P(sol) polarization free energy of solvation -64.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds