Wall clock time and date at job start Mon Mar 30 2020 04:07:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46933 * 2 1 4 4 C 1.50697 * 109.46888 * 240.00153 * 2 1 3 5 5 H 1.08002 * 119.99677 * 245.48424 * 4 2 1 6 6 C 1.37876 * 120.00517 * 65.47941 * 4 2 1 7 7 N 1.31517 * 119.99629 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00289 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46863 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46922 * 120.00299 * 8 6 4 11 11 H 1.48498 * 109.47132 * 240.00334 * 8 6 4 12 12 N 1.46893 * 109.47409 * 119.99932 * 2 1 3 13 13 C 1.46427 * 111.00355 * 200.70207 * 12 2 1 14 14 C 1.53376 * 108.67007 * 287.78790 * 13 12 2 15 15 H 1.09007 * 109.77071 * 51.43447 * 14 13 12 16 16 N 1.46889 * 109.77217 * 172.16934 * 14 13 12 17 17 C 1.53047 * 107.92486 * 291.77652 * 14 13 12 18 18 C 1.50802 * 109.64766 * 47.36024 * 17 14 13 19 19 C 1.38617 * 118.11944 * 164.58359 * 18 17 14 20 20 C 1.38059 * 120.48581 * 179.36065 * 19 18 17 21 21 C 1.38317 * 119.88295 * 359.97438 * 20 19 18 22 22 C 1.37806 * 119.95644 * 0.15556 * 21 20 19 23 23 C 1.38364 * 122.01531 * 344.21766 * 18 17 14 24 24 H 1.09006 * 109.47217 * 299.99932 * 1 2 3 25 25 H 1.09000 * 109.47623 * 60.00019 * 1 2 3 26 26 H 1.09001 * 109.47329 * 180.02562 * 1 2 3 27 27 H 0.97000 * 119.99713 * 179.97438 * 7 6 4 28 28 H 1.09004 * 109.60412 * 168.02698 * 13 12 2 29 29 H 1.08998 * 109.73658 * 47.61980 * 13 12 2 30 30 H 1.00905 * 111.00181 * 179.97438 * 16 14 13 31 31 H 1.00899 * 111.00301 * 303.95220 * 16 14 13 32 32 H 1.09007 * 109.44198 * 167.40674 * 17 14 13 33 33 H 1.08997 * 109.44098 * 287.30308 * 17 14 13 34 34 H 1.08000 * 119.76147 * 359.38220 * 19 18 17 35 35 H 1.07998 * 120.05910 * 179.97438 * 20 19 18 36 36 H 1.08001 * 120.01679 * 180.16879 * 21 20 19 37 37 H 1.08002 * 119.78442 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5782 -1.6372 -1.1338 6 6 1.7949 -0.1772 -2.4796 7 7 1.1305 0.9517 -2.5972 8 14 2.4181 -1.0574 -4.0048 9 1 3.1308 -2.2972 -3.6042 10 1 1.2694 -1.4076 -4.8783 11 1 3.3491 -0.1676 -4.7442 12 7 2.0197 -0.6924 1.1994 13 6 3.4002 -0.3082 1.5003 14 6 4.3264 -0.9498 0.4597 15 1 3.9652 -0.7249 -0.5439 16 7 5.6916 -0.4330 0.6237 17 6 4.3149 -2.4631 0.6882 18 6 2.8929 -2.9425 0.8373 19 6 2.6469 -4.3022 0.7263 20 6 1.3653 -4.7959 0.8675 21 6 0.3174 -3.9298 1.1223 22 6 0.5540 -2.5766 1.2314 23 6 1.8473 -2.0712 1.0858 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 0.9638 1.3270 -3.4760 28 1 3.6692 -0.6606 2.4961 29 1 3.4981 0.7766 1.4575 30 1 6.3176 -0.8439 -0.0527 31 1 5.7064 0.5742 0.5652 32 1 4.7786 -2.9621 -0.1628 33 1 4.8737 -2.6974 1.5942 34 1 3.4637 -4.9804 0.5281 35 1 1.1814 -5.8564 0.7793 36 1 -0.6856 -4.3140 1.2359 37 1 -0.2664 -1.9028 1.4299 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000226364005.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:10 Heat of formation + Delta-G solvation = 38.318788 kcal Electronic energy + Delta-G solvation = -18950.140846 eV Core-core repulsion = 16306.122605 eV Total energy + Delta-G solvation = -2644.018241 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.11340 -36.58207 -34.76567 -32.68068 -31.44094 -29.41757 -29.01330 -27.29003 -25.33788 -23.98283 -21.95043 -21.37035 -20.58809 -18.39273 -16.79804 -15.99723 -15.64049 -15.21743 -14.59401 -14.47995 -13.99560 -13.60535 -13.33318 -12.87978 -12.67006 -12.31737 -12.12869 -11.65244 -11.44931 -11.25467 -11.15065 -10.93932 -10.88640 -10.68254 -10.35560 -10.14899 -9.97644 -9.72932 -9.19276 -8.53252 -8.39810 -8.12586 -7.91694 -6.96900 -6.12597 -4.19288 2.07219 2.15996 3.18233 3.28105 3.32236 4.30664 4.42865 4.80615 5.07064 5.15145 5.40067 5.50291 5.59140 5.64592 5.79051 5.98941 6.12589 6.22508 6.26312 6.36184 6.45216 6.55368 6.66403 6.80386 6.93533 6.96439 7.02062 7.12133 7.15995 7.20708 7.47325 7.49983 7.61884 7.69983 7.84700 7.91444 7.97386 8.18442 8.48933 8.86821 9.44361 10.90092 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.016990 B = 0.011647 C = 0.010209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.664069 B = 2403.374812 C = 2741.988827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.212 3.788 3 H 0.046 0.954 4 C -0.540 4.540 5 H 0.073 0.927 6 C 0.069 3.931 7 N -0.883 5.883 8 Si 0.883 3.117 9 H -0.272 1.272 10 H -0.282 1.282 11 H -0.284 1.284 12 N -0.507 5.507 13 C 0.080 3.920 14 C 0.027 3.973 15 H 0.102 0.898 16 N -0.849 5.849 17 C -0.061 4.061 18 C -0.121 4.121 19 C -0.110 4.110 20 C -0.156 4.156 21 C -0.116 4.116 22 C -0.125 4.125 23 C 0.169 3.831 24 H 0.017 0.983 25 H 0.076 0.924 26 H 0.043 0.957 27 H 0.262 0.738 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.333 0.667 31 H 0.338 0.662 32 H 0.061 0.939 33 H 0.070 0.930 34 H 0.108 0.892 35 H 0.109 0.891 36 H 0.112 0.888 37 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.101 -5.354 5.222 8.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.109 3.891 3 H 0.064 0.936 4 C -0.579 4.579 5 H 0.091 0.909 6 C -0.134 4.134 7 N -0.521 5.521 8 Si 0.711 3.289 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.211 1.211 12 N -0.222 5.222 13 C -0.049 4.049 14 C -0.085 4.085 15 H 0.119 0.881 16 N -0.378 5.378 17 C -0.099 4.099 18 C -0.124 4.124 19 C -0.129 4.129 20 C -0.175 4.175 21 C -0.135 4.135 22 C -0.145 4.145 23 C 0.072 3.928 24 H 0.036 0.964 25 H 0.094 0.906 26 H 0.061 0.939 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.144 0.856 31 H 0.150 0.850 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.126 0.874 35 H 0.127 0.873 36 H 0.130 0.870 37 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 2.703 -5.306 6.195 8.593 hybrid contribution 0.643 -0.365 -2.649 2.751 sum 3.346 -5.670 3.546 7.478 Atomic orbital electron populations 1.22027 0.97661 1.00064 0.99886 1.19423 0.92657 0.93739 0.83232 0.93648 1.21914 1.35758 1.08933 0.91280 0.90941 1.24907 0.94886 0.94761 0.98841 1.69925 1.39745 1.18699 1.23739 0.86661 0.78873 0.79926 0.83457 1.19681 1.20788 1.21057 1.59239 1.19384 1.04526 1.39095 1.21915 0.86253 0.99536 0.97207 1.22724 0.88498 0.94198 1.03042 0.88067 1.58777 1.09447 1.11201 1.58327 1.20376 0.92837 0.95617 1.01055 1.19810 0.95560 0.93715 1.03297 1.20778 0.96578 0.94302 1.01222 1.20759 0.93114 0.98751 1.04847 1.20821 0.98243 0.93452 1.00967 1.21166 0.96287 0.94759 1.02241 1.18313 0.92536 0.88938 0.93044 0.96406 0.90560 0.93864 0.92854 0.91881 0.91230 0.85640 0.85050 0.92083 0.91173 0.87392 0.87312 0.87020 0.85601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.23 8.38 37.16 0.31 -2.92 16 2 C 0.21 5.07 2.15 -68.87 -0.15 4.93 16 3 H 0.05 1.18 7.68 -51.93 -0.40 0.79 16 4 C -0.54 -13.74 5.42 -34.44 -0.19 -13.92 16 5 H 0.07 1.88 4.44 -52.49 -0.23 1.65 16 6 C 0.07 1.82 5.32 -17.82 -0.09 1.72 16 7 N -0.88 -24.06 11.74 55.43 0.65 -23.41 16 8 Si 0.88 20.76 29.54 -169.99 -5.02 15.74 16 9 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 N -0.51 -10.80 4.49 -165.07 -0.74 -11.54 16 13 C 0.08 1.54 5.36 -3.89 -0.02 1.51 16 14 C 0.03 0.50 2.98 -67.50 -0.20 0.30 16 15 H 0.10 2.24 4.57 -51.92 -0.24 2.01 16 16 N -0.85 -13.18 9.27 -4.48 -0.04 -13.22 16 17 C -0.06 -1.10 5.20 -27.81 -0.14 -1.25 16 18 C -0.12 -2.36 4.60 -104.39 -0.48 -2.84 16 19 C -0.11 -1.95 9.63 -39.51 -0.38 -2.33 16 20 C -0.16 -2.62 10.05 -39.62 -0.40 -3.01 16 21 C -0.12 -2.02 10.03 -39.71 -0.40 -2.42 16 22 C -0.12 -2.46 8.00 -39.23 -0.31 -2.77 16 23 C 0.17 3.53 3.93 -83.85 -0.33 3.21 16 24 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.08 1.95 6.52 -51.93 -0.34 1.61 16 26 H 0.04 0.98 5.00 -51.93 -0.26 0.72 16 27 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 28 H 0.06 1.17 8.11 -51.93 -0.42 0.75 16 29 H 0.07 1.32 7.77 -51.93 -0.40 0.91 16 30 H 0.33 4.69 9.05 -39.29 -0.36 4.33 16 31 H 0.34 4.91 9.00 -39.29 -0.35 4.56 16 32 H 0.06 1.07 8.14 -51.92 -0.42 0.64 16 33 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 34 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 35 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 36 H 0.11 1.63 8.06 -52.49 -0.42 1.20 16 37 H 0.13 2.44 6.09 -52.49 -0.32 2.12 16 LS Contribution 282.54 15.07 4.26 4.26 Total: -1.00 -27.00 282.54 -8.67 -35.67 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: -4.99 Total: 12.30 kcal Atomic # 6 Polarization: -17.01 SS G_CDS: -2.79 Total: -19.80 kcal Atomic # 7 Polarization: -48.04 SS G_CDS: -0.13 Total: -48.17 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -27.00 -8.67 -35.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226364005.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.990 kcal (2) G-P(sol) polarization free energy of solvation -26.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds