Wall clock time and date at job start Mon Mar 30 2020 04:07:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46933 * 2 1 4 4 C 1.50697 * 109.46888 * 240.00153 * 2 1 3 5 5 H 1.08002 * 119.99677 * 245.48424 * 4 2 1 6 6 C 1.37876 * 120.00517 * 65.47941 * 4 2 1 7 7 N 1.31517 * 119.99629 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00289 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46863 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46922 * 120.00299 * 8 6 4 11 11 H 1.48498 * 109.47132 * 240.00334 * 8 6 4 12 12 N 1.46893 * 109.47409 * 119.99932 * 2 1 3 13 13 C 1.46427 * 111.00355 * 200.70207 * 12 2 1 14 14 C 1.53376 * 108.67007 * 287.78790 * 13 12 2 15 15 H 1.09007 * 109.77071 * 51.43447 * 14 13 12 16 16 N 1.46889 * 109.77217 * 172.16934 * 14 13 12 17 17 C 1.53047 * 107.92486 * 291.77652 * 14 13 12 18 18 C 1.50802 * 109.64766 * 47.36024 * 17 14 13 19 19 C 1.38617 * 118.11944 * 164.58359 * 18 17 14 20 20 C 1.38059 * 120.48581 * 179.36065 * 19 18 17 21 21 C 1.38317 * 119.88295 * 359.97438 * 20 19 18 22 22 C 1.37806 * 119.95644 * 0.15556 * 21 20 19 23 23 C 1.38364 * 122.01531 * 344.21766 * 18 17 14 24 24 H 1.09006 * 109.47217 * 299.99932 * 1 2 3 25 25 H 1.09000 * 109.47623 * 60.00019 * 1 2 3 26 26 H 1.09001 * 109.47329 * 180.02562 * 1 2 3 27 27 H 0.97000 * 119.99713 * 179.97438 * 7 6 4 28 28 H 1.09004 * 109.60412 * 168.02698 * 13 12 2 29 29 H 1.08998 * 109.73658 * 47.61980 * 13 12 2 30 30 H 1.00905 * 111.00181 * 179.97438 * 16 14 13 31 31 H 1.00899 * 111.00301 * 303.95220 * 16 14 13 32 32 H 1.09007 * 109.44198 * 167.40674 * 17 14 13 33 33 H 1.08997 * 109.44098 * 287.30308 * 17 14 13 34 34 H 1.08000 * 119.76147 * 359.38220 * 19 18 17 35 35 H 1.07998 * 120.05910 * 179.97438 * 20 19 18 36 36 H 1.08001 * 120.01679 * 180.16879 * 21 20 19 37 37 H 1.08002 * 119.78442 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5782 -1.6372 -1.1338 6 6 1.7949 -0.1772 -2.4796 7 7 1.1305 0.9517 -2.5972 8 14 2.4181 -1.0574 -4.0048 9 1 3.1308 -2.2972 -3.6042 10 1 1.2694 -1.4076 -4.8783 11 1 3.3491 -0.1676 -4.7442 12 7 2.0197 -0.6924 1.1994 13 6 3.4002 -0.3082 1.5003 14 6 4.3264 -0.9498 0.4597 15 1 3.9652 -0.7249 -0.5439 16 7 5.6916 -0.4330 0.6237 17 6 4.3149 -2.4631 0.6882 18 6 2.8929 -2.9425 0.8373 19 6 2.6469 -4.3022 0.7263 20 6 1.3653 -4.7959 0.8675 21 6 0.3174 -3.9298 1.1223 22 6 0.5540 -2.5766 1.2314 23 6 1.8473 -2.0712 1.0858 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 0.9638 1.3270 -3.4760 28 1 3.6692 -0.6606 2.4961 29 1 3.4981 0.7766 1.4575 30 1 6.3176 -0.8439 -0.0527 31 1 5.7064 0.5742 0.5652 32 1 4.7786 -2.9621 -0.1628 33 1 4.8737 -2.6974 1.5942 34 1 3.4637 -4.9804 0.5281 35 1 1.1814 -5.8564 0.7793 36 1 -0.6856 -4.3140 1.2359 37 1 -0.2664 -1.9028 1.4299 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226364005.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:10 Heat of formation + Delta-G solvation = 21.091489 kcal Electronic energy + Delta-G solvation = -18950.887878 eV Core-core repulsion = 16306.122605 eV Total energy + Delta-G solvation = -2644.765273 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.63690 -38.04573 -36.35697 -34.53177 -32.84331 -31.12975 -30.54756 -28.70190 -27.31252 -25.52053 -23.47811 -22.81102 -22.32027 -19.91101 -18.62213 -17.53427 -17.22558 -16.75388 -16.24392 -15.91388 -15.55590 -15.22214 -14.89154 -14.53293 -14.18292 -13.72266 -13.57516 -13.36704 -13.26501 -13.05302 -12.79545 -12.59819 -12.40237 -12.33197 -12.22544 -11.79691 -11.57033 -11.37247 -11.04342 -10.52100 -9.95999 -9.52466 -9.34875 -8.58244 -8.08021 -6.21627 0.65927 0.72713 1.31149 1.36651 1.44705 2.36903 2.97590 3.13163 3.33133 3.66002 3.95797 4.06285 4.23227 4.30679 4.42867 4.62257 4.67154 4.76638 4.79878 4.85484 4.92243 4.98466 5.07491 5.14578 5.19870 5.32086 5.43208 5.45197 5.62919 5.71223 5.78414 5.81658 5.93030 6.07130 6.22542 6.26437 6.39652 6.63582 6.83552 6.94304 7.43125 8.90558 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.016990 B = 0.011647 C = 0.010209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.664069 B = 2403.374812 C = 2741.988827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.219 3.781 3 H 0.015 0.985 4 C -0.529 4.529 5 H 0.069 0.931 6 C 0.023 3.977 7 N -0.913 5.913 8 Si 0.936 3.064 9 H -0.271 1.271 10 H -0.284 1.284 11 H -0.282 1.282 12 N -0.510 5.510 13 C 0.079 3.921 14 C 0.036 3.964 15 H 0.065 0.935 16 N -0.839 5.839 17 C -0.056 4.056 18 C -0.138 4.138 19 C -0.117 4.117 20 C -0.150 4.150 21 C -0.118 4.118 22 C -0.145 4.145 23 C 0.138 3.862 24 H 0.028 0.972 25 H 0.050 0.950 26 H 0.047 0.953 27 H 0.260 0.740 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.343 0.657 31 H 0.343 0.657 32 H 0.067 0.933 33 H 0.082 0.918 34 H 0.133 0.867 35 H 0.144 0.856 36 H 0.140 0.860 37 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.803 -7.571 5.498 10.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.115 3.885 3 H 0.033 0.967 4 C -0.568 4.568 5 H 0.087 0.913 6 C -0.177 4.177 7 N -0.552 5.552 8 Si 0.763 3.237 9 H -0.195 1.195 10 H -0.210 1.210 11 H -0.208 1.208 12 N -0.226 5.226 13 C -0.049 4.049 14 C -0.076 4.076 15 H 0.083 0.917 16 N -0.368 5.368 17 C -0.094 4.094 18 C -0.141 4.141 19 C -0.135 4.135 20 C -0.168 4.168 21 C -0.136 4.136 22 C -0.164 4.164 23 C 0.041 3.959 24 H 0.048 0.952 25 H 0.069 0.931 26 H 0.066 0.934 27 H 0.070 0.930 28 H 0.090 0.910 29 H 0.083 0.917 30 H 0.156 0.844 31 H 0.156 0.844 32 H 0.085 0.915 33 H 0.100 0.900 34 H 0.151 0.849 35 H 0.162 0.838 36 H 0.158 0.842 37 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 3.423 -7.538 6.480 10.514 hybrid contribution 0.436 0.259 -2.657 2.705 sum 3.860 -7.279 3.823 9.082 Atomic orbital electron populations 1.21873 0.97458 1.00101 0.99130 1.19160 0.92762 0.92314 0.84235 0.96710 1.22035 1.34605 1.08424 0.91744 0.91304 1.25523 0.95496 0.95452 1.01197 1.70033 1.41237 1.19941 1.24011 0.85829 0.78200 0.78946 0.80714 1.19533 1.21011 1.20783 1.59153 1.20486 1.05292 1.37687 1.21933 0.85774 0.99357 0.97827 1.22390 0.89624 0.95040 1.00531 0.91712 1.58740 1.07865 1.11726 1.58516 1.20354 0.92460 0.94769 1.01799 1.20082 0.95846 0.94644 1.03514 1.21152 0.98017 0.93891 1.00482 1.21211 0.92404 1.00479 1.02708 1.21191 1.00064 0.92549 0.99791 1.21315 0.95848 0.96063 1.03191 1.18515 0.93641 0.88563 0.95186 0.95250 0.93084 0.93372 0.93041 0.91014 0.91734 0.84429 0.84414 0.91488 0.89957 0.84867 0.83807 0.84177 0.86218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.08 8.38 71.98 0.60 -5.47 16 2 C 0.22 10.71 2.15 44.17 0.09 10.81 16 3 H 0.01 0.81 7.68 -2.39 -0.02 0.79 16 4 C -0.53 -27.17 5.42 25.60 0.14 -27.03 16 5 H 0.07 3.56 4.44 -2.91 -0.01 3.55 16 6 C 0.02 1.23 5.32 84.65 0.45 1.68 16 7 N -0.91 -50.83 11.74 21.45 0.25 -50.58 16 8 Si 0.94 42.73 29.54 68.60 2.03 44.76 16 9 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 10 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 11 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 12 N -0.51 -21.88 4.49 -676.15 -3.04 -24.92 16 13 C 0.08 3.06 5.36 86.52 0.46 3.53 16 14 C 0.04 1.33 2.98 45.06 0.13 1.47 16 15 H 0.07 2.88 4.57 -2.38 -0.01 2.87 16 16 N -0.84 -24.91 9.27 -168.10 -1.56 -26.47 16 17 C -0.06 -1.93 5.20 29.90 0.16 -1.77 16 18 C -0.14 -5.15 4.60 -19.71 -0.09 -5.24 16 19 C -0.12 -3.78 9.63 22.32 0.21 -3.56 16 20 C -0.15 -4.46 10.05 22.25 0.22 -4.23 16 21 C -0.12 -3.77 10.03 22.19 0.22 -3.54 16 22 C -0.14 -5.54 8.00 22.50 0.18 -5.36 16 23 C 0.14 5.65 3.93 38.30 0.15 5.80 16 24 H 0.03 1.27 8.14 -2.38 -0.02 1.25 16 25 H 0.05 2.67 6.52 -2.39 -0.02 2.65 16 26 H 0.05 2.21 5.00 -2.39 -0.01 2.19 16 27 H 0.26 13.92 8.31 -92.71 -0.77 13.15 16 28 H 0.07 2.62 8.11 -2.39 -0.02 2.60 16 29 H 0.06 2.49 7.77 -2.39 -0.02 2.47 16 30 H 0.34 9.07 9.05 -89.69 -0.81 8.26 16 31 H 0.34 9.67 9.00 -89.69 -0.81 8.87 16 32 H 0.07 2.19 8.14 -2.38 -0.02 2.17 16 33 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 34 H 0.13 3.56 8.06 -2.91 -0.02 3.53 16 35 H 0.14 3.25 8.06 -2.91 -0.02 3.23 16 36 H 0.14 3.60 8.06 -2.91 -0.02 3.57 16 37 H 0.12 4.61 6.09 -2.91 -0.02 4.59 16 Total: -1.00 -57.56 282.54 0.10 -57.46 By element: Atomic # 1 Polarization: 33.20 SS G_CDS: -0.52 Total: 32.68 kcal Atomic # 6 Polarization: -35.87 SS G_CDS: 2.94 Total: -32.93 kcal Atomic # 7 Polarization: -97.62 SS G_CDS: -4.34 Total: -101.97 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Total: -57.56 0.10 -57.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226364005.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.548 kcal (2) G-P(sol) polarization free energy of solvation -57.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds