Wall clock time and date at job start Mon Mar 30 2020 04:05:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09003 * 108.50586 * 2 1 4 4 C 1.51632 * 108.45685 * 242.26031 * 2 1 3 5 5 N 1.46972 * 111.00340 * 171.61256 * 4 2 1 6 6 C 1.46902 * 110.99613 * 323.58773 * 5 4 2 7 7 C 1.50698 * 109.47180 * 273.88395 * 6 5 4 8 8 H 1.07992 * 119.99829 * 0.02562 * 7 6 5 9 9 C 1.37882 * 119.99929 * 180.02562 * 7 6 5 10 10 N 1.31515 * 120.00026 * 180.02562 * 9 7 6 11 11 Si 1.86802 * 119.99649 * 0.02562 * 9 7 6 12 12 H 1.48500 * 109.47342 * 269.99883 * 11 9 7 13 13 H 1.48493 * 109.47422 * 30.00566 * 11 9 7 14 14 H 1.48507 * 109.46456 * 150.00067 * 11 9 7 15 15 C 1.40250 * 109.96914 * 86.81084 * 5 4 2 16 16 C 1.39014 * 119.77122 * 109.48751 * 15 5 4 17 17 C 1.38167 * 119.57736 * 180.17785 * 16 15 5 18 18 C 1.38307 * 120.18331 * 0.02562 * 17 16 15 19 19 C 1.38376 * 120.18184 * 359.91016 * 18 17 16 20 20 C 1.37996 * 120.19156 * 289.50832 * 15 5 4 21 21 C 1.51464 * 119.75729 * 359.40451 * 20 15 5 22 22 N 1.45679 * 108.56864 * 117.81408 * 2 1 3 23 23 H 1.08994 * 109.47907 * 302.18663 * 1 2 3 24 24 H 1.09005 * 109.47133 * 62.18873 * 1 2 3 25 25 H 1.09006 * 109.47152 * 182.18022 * 1 2 3 26 26 H 1.08996 * 109.17564 * 51.21202 * 4 2 1 27 27 H 1.09007 * 109.15962 * 292.00126 * 4 2 1 28 28 H 1.09008 * 109.46585 * 153.88850 * 6 5 4 29 29 H 1.08996 * 109.47123 * 33.89245 * 6 5 4 30 30 H 0.96997 * 119.99713 * 179.97438 * 10 9 7 31 31 H 1.07992 * 120.21194 * 0.18372 * 16 15 5 32 32 H 1.07997 * 119.90409 * 180.02562 * 17 16 15 33 33 H 1.08005 * 119.90670 * 179.97438 * 18 17 16 34 34 H 1.08000 * 120.15627 * 179.97438 * 19 18 17 35 35 H 1.08998 * 109.68430 * 189.03084 * 21 20 15 36 36 H 1.09003 * 109.68035 * 309.54673 * 21 20 15 37 37 H 1.00900 * 110.99888 * 63.92413 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8759 1.0337 0.0000 4 6 2.0100 -0.6695 -1.2730 5 7 3.4643 -0.5249 -1.4281 6 6 3.9176 0.7859 -0.9439 7 6 3.7898 1.8016 -2.0498 8 1 3.4095 1.5033 -3.0156 9 6 4.1584 3.1117 -1.8286 10 7 4.0464 3.9982 -2.7936 11 14 4.8168 3.6273 -0.1583 12 1 3.6894 4.0590 0.7065 13 1 5.5148 2.4795 0.4745 14 1 5.7698 4.7535 -0.3282 15 6 4.1234 -1.5644 -0.7558 16 6 4.7653 -2.5596 -1.4839 17 6 5.4101 -3.5839 -0.8175 18 6 5.4162 -3.6185 0.5651 19 6 4.7781 -2.6266 1.2887 20 6 4.1353 -1.6011 0.6236 21 6 3.4450 -0.5065 1.4107 22 7 1.9938 -0.6444 1.2214 23 1 -0.3635 0.5474 0.8696 24 1 -0.3634 0.4795 -0.9090 25 1 -0.3634 -1.0270 0.0391 26 1 1.5116 -0.2123 -2.1278 27 1 1.7573 -1.7293 -1.2371 28 1 4.9599 0.7174 -0.6321 29 1 3.3042 1.0921 -0.0965 30 1 4.3054 4.9199 -2.6378 31 1 4.7600 -2.5323 -2.5634 32 1 5.9108 -4.3595 -1.3779 33 1 5.9214 -4.4215 1.0814 34 1 4.7827 -2.6543 2.3683 35 1 3.6885 -0.6055 2.4685 36 1 3.7722 0.4682 1.0485 37 1 1.7165 -1.6142 1.2464 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230230131.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:16 Heat of formation + Delta-G solvation = 66.070416 kcal Electronic energy + Delta-G solvation = -18659.245586 eV Core-core repulsion = 16016.430746 eV Total energy + Delta-G solvation = -2642.814840 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.64957 -37.39900 -34.59258 -32.62364 -32.42544 -30.09001 -29.11439 -27.55261 -24.97822 -24.55727 -22.35602 -21.91751 -20.71827 -19.23757 -17.05519 -16.67434 -15.55623 -15.39191 -14.95587 -14.84161 -14.11743 -13.91735 -13.75227 -13.43573 -12.88268 -12.74098 -12.49981 -12.00221 -11.80297 -11.57229 -11.50472 -11.22719 -11.08714 -10.87385 -10.83811 -10.29945 -9.99604 -9.88947 -9.35732 -8.82426 -8.62237 -8.40799 -8.16355 -7.38531 -6.09177 -4.05897 1.55659 1.64764 3.23410 3.31481 3.32822 3.95467 4.36647 4.56371 4.57493 4.99884 5.07232 5.18563 5.24006 5.28329 5.44358 5.56424 5.64609 5.71869 5.80324 5.89934 5.95604 6.12277 6.13920 6.28116 6.31779 6.40293 6.48860 6.60127 6.69302 6.73154 6.75822 6.94236 7.14999 7.29499 7.58979 7.60751 7.73450 8.06158 8.61772 9.01872 9.51703 11.04038 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.020429 B = 0.009372 C = 0.008219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.273944 B = 2986.969115 C = 3405.717424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.034 3.966 3 H 0.106 0.894 4 C 0.043 3.957 5 N -0.487 5.487 6 C 0.141 3.859 7 C -0.504 4.504 8 H 0.081 0.919 9 C 0.071 3.929 10 N -0.897 5.897 11 Si 0.864 3.136 12 H -0.274 1.274 13 H -0.267 1.267 14 H -0.283 1.283 15 C 0.111 3.889 16 C -0.102 4.102 17 C -0.119 4.119 18 C -0.137 4.137 19 C -0.106 4.106 20 C -0.156 4.156 21 C 0.067 3.933 22 N -0.671 5.671 23 H 0.058 0.942 24 H 0.062 0.938 25 H 0.046 0.954 26 H 0.087 0.913 27 H 0.054 0.946 28 H 0.024 0.976 29 H 0.026 0.974 30 H 0.264 0.736 31 H 0.128 0.872 32 H 0.119 0.881 33 H 0.116 0.884 34 H 0.117 0.883 35 H 0.078 0.922 36 H 0.108 0.892 37 H 0.334 0.666 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.883 -12.784 7.860 15.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.077 4.077 3 H 0.124 0.876 4 C -0.085 4.085 5 N -0.207 5.207 6 C 0.017 3.983 7 C -0.543 4.543 8 H 0.099 0.901 9 C -0.131 4.131 10 N -0.536 5.536 11 Si 0.691 3.309 12 H -0.199 1.199 13 H -0.192 1.192 14 H -0.209 1.209 15 C 0.016 3.984 16 C -0.121 4.121 17 C -0.137 4.137 18 C -0.155 4.155 19 C -0.125 4.125 20 C -0.160 4.160 21 C -0.061 4.061 22 N -0.299 5.299 23 H 0.077 0.923 24 H 0.081 0.919 25 H 0.065 0.935 26 H 0.105 0.895 27 H 0.072 0.928 28 H 0.041 0.959 29 H 0.043 0.957 30 H 0.074 0.926 31 H 0.146 0.854 32 H 0.137 0.863 33 H 0.134 0.866 34 H 0.135 0.865 35 H 0.096 0.904 36 H 0.126 0.874 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -1.913 -12.014 7.673 14.382 hybrid contribution 0.726 -0.230 0.960 1.225 sum -1.187 -12.244 8.633 15.028 Atomic orbital electron populations 1.21735 0.94427 1.01172 1.02073 1.21879 0.95926 1.01695 0.88224 0.87610 1.22455 0.88244 0.99409 0.98411 1.60556 1.03465 1.02199 1.54477 1.20887 0.95179 0.85578 0.96701 1.20984 1.42939 0.91367 0.98999 0.90061 1.24860 0.95383 0.96477 0.96399 1.69878 1.48477 1.03125 1.32132 0.87027 0.79666 0.78882 0.85290 1.19917 1.19195 1.20889 1.19118 0.96127 0.93284 0.89827 1.21155 0.97085 0.93503 1.00319 1.21063 0.99801 0.98488 0.94391 1.21053 1.01075 0.99170 0.94251 1.20947 0.97943 0.94394 0.99245 1.21493 1.01100 0.98365 0.95072 1.21901 0.86715 0.98580 0.98938 1.60363 1.12223 1.20476 1.36834 0.92263 0.91893 0.93458 0.89494 0.92765 0.95851 0.95671 0.92596 0.85394 0.86321 0.86625 0.86491 0.90393 0.87442 0.84797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 9.37 37.15 0.35 -1.58 16 2 C 0.03 0.58 2.46 -69.07 -0.17 0.41 16 3 H 0.11 2.17 5.60 -51.93 -0.29 1.88 16 4 C 0.04 0.79 5.14 -4.48 -0.02 0.77 16 5 N -0.49 -10.22 4.66 -173.30 -0.81 -11.03 16 6 C 0.14 3.34 1.81 -4.98 -0.01 3.33 16 7 C -0.50 -14.14 9.84 -34.44 -0.34 -14.48 16 8 H 0.08 2.51 8.06 -52.49 -0.42 2.08 16 9 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 10 N -0.90 -27.22 13.96 55.43 0.77 -26.45 16 11 Si 0.86 21.16 27.47 -169.99 -4.67 16.49 16 12 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 13 H -0.27 -6.33 6.54 56.52 0.37 -5.96 16 14 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 15 C 0.11 2.08 4.27 -83.81 -0.36 1.72 16 16 C -0.10 -1.70 9.99 -39.32 -0.39 -2.10 16 17 C -0.12 -1.65 10.04 -39.58 -0.40 -2.05 16 18 C -0.14 -1.82 10.04 -39.51 -0.40 -2.22 16 19 C -0.11 -1.52 9.69 -39.58 -0.38 -1.90 16 20 C -0.16 -2.64 4.96 -104.39 -0.52 -3.16 16 21 C 0.07 1.13 6.10 -4.55 -0.03 1.10 16 22 N -0.67 -10.65 6.30 -109.09 -0.69 -11.34 16 23 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 24 H 0.06 0.88 8.07 -51.93 -0.42 0.46 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.09 1.66 8.04 -51.93 -0.42 1.24 16 27 H 0.05 0.90 7.77 -51.92 -0.40 0.50 16 28 H 0.02 0.59 6.72 -51.92 -0.35 0.25 16 29 H 0.03 0.60 2.03 -51.93 -0.11 0.50 16 30 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 31 H 0.13 2.09 8.06 -52.49 -0.42 1.67 16 32 H 0.12 1.33 8.06 -52.49 -0.42 0.90 16 33 H 0.12 1.21 8.06 -52.48 -0.42 0.79 16 34 H 0.12 1.42 7.98 -52.49 -0.42 1.00 16 35 H 0.08 1.16 7.93 -51.93 -0.41 0.75 16 36 H 0.11 2.13 4.25 -51.93 -0.22 1.91 16 37 H 0.33 4.85 8.50 -39.29 -0.33 4.52 16 LS Contribution 286.02 15.07 4.31 4.31 Total: -1.00 -29.77 286.02 -8.92 -38.68 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -5.07 Total: 7.57 kcal Atomic # 6 Polarization: -15.48 SS G_CDS: -2.76 Total: -18.24 kcal Atomic # 7 Polarization: -48.08 SS G_CDS: -0.72 Total: -48.81 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.67 Total: 16.49 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -29.77 -8.92 -38.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230230131.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.755 kcal (2) G-P(sol) polarization free energy of solvation -29.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds