Wall clock time and date at job start Mon Mar 30 2020 04:05:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09003 * 108.50586 * 2 1 4 4 C 1.51632 * 108.45685 * 242.26031 * 2 1 3 5 5 N 1.46972 * 111.00340 * 171.61256 * 4 2 1 6 6 C 1.46902 * 110.99613 * 323.58773 * 5 4 2 7 7 C 1.50698 * 109.47180 * 273.88395 * 6 5 4 8 8 H 1.07992 * 119.99829 * 0.02562 * 7 6 5 9 9 C 1.37882 * 119.99929 * 180.02562 * 7 6 5 10 10 N 1.31515 * 120.00026 * 180.02562 * 9 7 6 11 11 Si 1.86802 * 119.99649 * 0.02562 * 9 7 6 12 12 H 1.48500 * 109.47342 * 269.99883 * 11 9 7 13 13 H 1.48493 * 109.47422 * 30.00566 * 11 9 7 14 14 H 1.48507 * 109.46456 * 150.00067 * 11 9 7 15 15 C 1.40250 * 109.96914 * 86.81084 * 5 4 2 16 16 C 1.39014 * 119.77122 * 109.48751 * 15 5 4 17 17 C 1.38167 * 119.57736 * 180.17785 * 16 15 5 18 18 C 1.38307 * 120.18331 * 0.02562 * 17 16 15 19 19 C 1.38376 * 120.18184 * 359.91016 * 18 17 16 20 20 C 1.37996 * 120.19156 * 289.50832 * 15 5 4 21 21 C 1.51464 * 119.75729 * 359.40451 * 20 15 5 22 22 N 1.45679 * 108.56864 * 117.81408 * 2 1 3 23 23 H 1.08994 * 109.47907 * 302.18663 * 1 2 3 24 24 H 1.09005 * 109.47133 * 62.18873 * 1 2 3 25 25 H 1.09006 * 109.47152 * 182.18022 * 1 2 3 26 26 H 1.08996 * 109.17564 * 51.21202 * 4 2 1 27 27 H 1.09007 * 109.15962 * 292.00126 * 4 2 1 28 28 H 1.09008 * 109.46585 * 153.88850 * 6 5 4 29 29 H 1.08996 * 109.47123 * 33.89245 * 6 5 4 30 30 H 0.96997 * 119.99713 * 179.97438 * 10 9 7 31 31 H 1.07992 * 120.21194 * 0.18372 * 16 15 5 32 32 H 1.07997 * 119.90409 * 180.02562 * 17 16 15 33 33 H 1.08005 * 119.90670 * 179.97438 * 18 17 16 34 34 H 1.08000 * 120.15627 * 179.97438 * 19 18 17 35 35 H 1.08998 * 109.68430 * 189.03084 * 21 20 15 36 36 H 1.09003 * 109.68035 * 309.54673 * 21 20 15 37 37 H 1.00900 * 110.99888 * 63.92413 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8759 1.0337 0.0000 4 6 2.0100 -0.6695 -1.2730 5 7 3.4643 -0.5249 -1.4281 6 6 3.9176 0.7859 -0.9439 7 6 3.7898 1.8016 -2.0498 8 1 3.4095 1.5033 -3.0156 9 6 4.1584 3.1117 -1.8286 10 7 4.0464 3.9982 -2.7936 11 14 4.8168 3.6273 -0.1583 12 1 3.6894 4.0590 0.7065 13 1 5.5148 2.4795 0.4745 14 1 5.7698 4.7535 -0.3282 15 6 4.1234 -1.5644 -0.7558 16 6 4.7653 -2.5596 -1.4839 17 6 5.4101 -3.5839 -0.8175 18 6 5.4162 -3.6185 0.5651 19 6 4.7781 -2.6266 1.2887 20 6 4.1353 -1.6011 0.6236 21 6 3.4450 -0.5065 1.4107 22 7 1.9938 -0.6444 1.2214 23 1 -0.3635 0.5474 0.8696 24 1 -0.3634 0.4795 -0.9090 25 1 -0.3634 -1.0270 0.0391 26 1 1.5116 -0.2123 -2.1278 27 1 1.7573 -1.7293 -1.2371 28 1 4.9599 0.7174 -0.6321 29 1 3.3042 1.0921 -0.0965 30 1 4.3054 4.9199 -2.6378 31 1 4.7600 -2.5323 -2.5634 32 1 5.9108 -4.3595 -1.3779 33 1 5.9214 -4.4215 1.0814 34 1 4.7827 -2.6543 2.3683 35 1 3.6885 -0.6055 2.4685 36 1 3.7722 0.4682 1.0485 37 1 1.7165 -1.6142 1.2464 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230230131.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:15 Heat of formation + Delta-G solvation = 44.966771 kcal Electronic energy + Delta-G solvation = -18660.160709 eV Core-core repulsion = 16016.430746 eV Total energy + Delta-G solvation = -2643.729963 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.02220 -38.64756 -36.08028 -34.66648 -33.74361 -31.39707 -30.68726 -29.05903 -26.35622 -26.05707 -24.05018 -23.16184 -21.98591 -20.77348 -18.97741 -18.17130 -17.00096 -16.79327 -16.48363 -16.09903 -15.83030 -15.39759 -15.03042 -14.75610 -14.56969 -14.16742 -13.98167 -13.44540 -13.24773 -13.00961 -12.86247 -12.70888 -12.59807 -12.26355 -12.20569 -12.00587 -11.88276 -11.50934 -11.29137 -10.79353 -10.08652 -9.63169 -9.50750 -8.88309 -8.32437 -6.34451 0.36910 0.46834 1.28069 1.29819 1.39271 2.28254 2.77444 2.99163 3.08559 3.30367 3.78507 3.82136 3.97881 4.11190 4.23287 4.28311 4.32626 4.43675 4.59357 4.66280 4.72177 4.78265 4.84450 4.88282 4.94806 4.98226 5.15795 5.20553 5.30548 5.43850 5.52312 5.58667 5.69472 5.88051 5.98571 6.01630 6.33051 6.43609 6.69849 6.74573 7.27426 8.84572 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.020429 B = 0.009372 C = 0.008219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.273944 B = 2986.969115 C = 3405.717424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.041 3.959 3 H 0.067 0.933 4 C 0.047 3.953 5 N -0.509 5.509 6 C 0.161 3.839 7 C -0.512 4.512 8 H 0.033 0.967 9 C 0.013 3.987 10 N -0.945 5.945 11 Si 0.934 3.066 12 H -0.260 1.260 13 H -0.254 1.254 14 H -0.278 1.278 15 C 0.076 3.924 16 C -0.122 4.122 17 C -0.112 4.112 18 C -0.126 4.126 19 C -0.102 4.102 20 C -0.168 4.168 21 C 0.068 3.932 22 N -0.661 5.661 23 H 0.065 0.935 24 H 0.058 0.942 25 H 0.069 0.931 26 H 0.065 0.935 27 H 0.071 0.929 28 H 0.007 0.993 29 H 0.041 0.959 30 H 0.267 0.733 31 H 0.117 0.883 32 H 0.149 0.851 33 H 0.155 0.845 34 H 0.147 0.853 35 H 0.104 0.896 36 H 0.074 0.926 37 H 0.347 0.653 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.292 -15.180 11.015 18.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.070 4.070 3 H 0.085 0.915 4 C -0.081 4.081 5 N -0.229 5.229 6 C 0.035 3.965 7 C -0.550 4.550 8 H 0.052 0.948 9 C -0.184 4.184 10 N -0.585 5.585 11 Si 0.758 3.242 12 H -0.185 1.185 13 H -0.178 1.178 14 H -0.204 1.204 15 C -0.018 4.018 16 C -0.141 4.141 17 C -0.130 4.130 18 C -0.144 4.144 19 C -0.121 4.121 20 C -0.172 4.172 21 C -0.060 4.060 22 N -0.290 5.290 23 H 0.084 0.916 24 H 0.077 0.923 25 H 0.088 0.912 26 H 0.083 0.917 27 H 0.090 0.910 28 H 0.025 0.975 29 H 0.057 0.943 30 H 0.076 0.924 31 H 0.135 0.865 32 H 0.167 0.833 33 H 0.173 0.827 34 H 0.165 0.835 35 H 0.122 0.878 36 H 0.092 0.908 37 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -1.332 -14.443 10.832 18.102 hybrid contribution 0.555 0.377 -0.112 0.681 sum -0.777 -14.065 10.719 17.701 Atomic orbital electron populations 1.21673 0.92063 1.02726 1.02206 1.21688 0.97782 0.99316 0.88215 0.91473 1.22442 0.86987 1.00320 0.98391 1.60301 1.05024 1.01767 1.55832 1.20546 0.94393 0.86276 0.95239 1.21227 1.42318 0.92978 0.98523 0.94816 1.25746 0.95631 0.96367 1.00703 1.70035 1.50072 1.03680 1.34736 0.85905 0.79425 0.78734 0.80176 1.18457 1.17821 1.20363 1.19231 0.98002 0.93496 0.91059 1.21266 0.98156 0.94579 1.00138 1.21406 0.98511 0.97859 0.95241 1.21522 0.99610 0.99382 0.93884 1.21297 0.96586 0.93383 1.00813 1.21482 1.02142 0.99381 0.94181 1.21834 0.87065 0.96924 1.00214 1.60376 1.11914 1.21228 1.35466 0.91569 0.92315 0.91189 0.91700 0.91009 0.97504 0.94258 0.92361 0.86452 0.83309 0.82734 0.83536 0.87808 0.90829 0.83423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.51 9.37 71.98 0.67 -2.84 16 2 C 0.04 1.42 2.46 44.69 0.11 1.53 16 3 H 0.07 2.83 5.60 -2.39 -0.01 2.82 16 4 C 0.05 1.76 5.14 85.84 0.44 2.20 16 5 N -0.51 -22.14 4.66 -702.20 -3.27 -25.41 16 6 C 0.16 7.89 1.81 85.56 0.15 8.04 16 7 C -0.51 -30.38 9.84 25.60 0.25 -30.13 16 8 H 0.03 2.25 8.06 -2.91 -0.02 2.23 16 9 C 0.01 0.78 5.47 84.66 0.46 1.24 16 10 N -0.94 -59.78 13.96 21.45 0.30 -59.48 16 11 Si 0.93 44.58 27.47 68.60 1.88 46.47 16 12 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 13 H -0.25 -11.51 6.54 99.48 0.65 -10.86 16 14 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 15 C 0.08 2.82 4.27 37.92 0.16 2.99 16 16 C -0.12 -4.01 9.99 22.44 0.22 -3.79 16 17 C -0.11 -2.74 10.04 22.27 0.22 -2.52 16 18 C -0.13 -2.73 10.04 22.32 0.22 -2.51 16 19 C -0.10 -2.49 9.69 22.27 0.22 -2.27 16 20 C -0.17 -5.32 4.96 -19.71 -0.10 -5.42 16 21 C 0.07 2.16 6.10 85.78 0.52 2.69 16 22 N -0.66 -19.74 6.30 -499.07 -3.15 -22.89 16 23 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 24 H 0.06 1.64 8.07 -2.38 -0.02 1.62 16 25 H 0.07 1.60 8.14 -2.38 -0.02 1.58 16 26 H 0.06 2.64 8.04 -2.39 -0.02 2.62 16 27 H 0.07 2.39 7.77 -2.38 -0.02 2.37 16 28 H 0.01 0.36 6.72 -2.38 -0.02 0.34 16 29 H 0.04 1.89 2.03 -2.39 0.00 1.89 16 30 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 31 H 0.12 3.94 8.06 -2.91 -0.02 3.92 16 32 H 0.15 2.71 8.06 -2.91 -0.02 2.69 16 33 H 0.16 2.21 8.06 -2.91 -0.02 2.19 16 34 H 0.15 2.71 7.98 -2.91 -0.02 2.69 16 35 H 0.10 2.72 7.93 -2.39 -0.02 2.70 16 36 H 0.07 2.86 4.25 -2.39 -0.01 2.85 16 37 H 0.35 9.08 8.50 -89.69 -0.76 8.32 16 Total: -1.00 -68.38 286.02 -0.41 -68.79 By element: Atomic # 1 Polarization: 23.06 SS G_CDS: 0.26 Total: 23.31 kcal Atomic # 6 Polarization: -34.36 SS G_CDS: 3.57 Total: -30.79 kcal Atomic # 7 Polarization: -101.66 SS G_CDS: -6.12 Total: -107.78 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 1.88 Total: 46.47 kcal Total: -68.38 -0.41 -68.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230230131.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.758 kcal (2) G-P(sol) polarization free energy of solvation -68.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds