Wall clock time and date at job start Mon Mar 30 2020 03:36:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30901 * 1 3 3 Si 1.86798 * 119.99975 * 2 1 4 4 H 1.48502 * 109.47235 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46839 * 299.99841 * 3 2 1 6 6 H 1.48504 * 109.47156 * 59.99364 * 3 2 1 7 7 C 1.39864 * 119.99979 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00058 * 197.83790 * 7 2 1 9 9 C 1.41135 * 120.00366 * 17.84171 * 7 2 1 10 10 C 1.40890 * 120.15191 * 24.74039 * 9 7 2 11 11 C 1.36345 * 119.83294 * 180.27594 * 10 9 7 12 12 C 1.39565 * 120.16222 * 359.50629 * 11 10 9 13 13 N 1.38860 * 119.84070 * 180.25420 * 12 11 10 14 14 C 1.46502 * 119.99628 * 179.97438 * 13 12 11 15 15 C 1.53006 * 109.46871 * 179.97438 * 14 13 12 16 16 H 1.09000 * 110.36819 * 295.70236 * 15 14 13 17 17 C 1.54381 * 110.40990 * 173.35459 * 15 14 13 18 18 C 1.54260 * 105.05678 * 217.37109 * 17 15 14 19 19 C 1.54378 * 105.06174 * 359.97438 * 18 17 15 20 20 N 1.48555 * 110.41030 * 58.04900 * 15 14 13 21 21 C 1.39566 * 120.31551 * 0.22636 * 12 11 10 22 22 C 1.36341 * 120.16243 * 0.02596 * 21 12 11 23 23 H 0.96997 * 120.00349 * 0.02562 * 1 2 3 24 24 H 1.07996 * 120.08616 * 0.03581 * 10 9 7 25 25 H 1.07997 * 119.91543 * 179.77347 * 11 10 9 26 26 H 0.96999 * 119.99955 * 359.97438 * 13 12 11 27 27 H 1.09000 * 109.47054 * 299.99862 * 14 13 12 28 28 H 1.09007 * 109.47067 * 60.00003 * 14 13 12 29 29 H 1.09001 * 110.32202 * 336.26124 * 17 15 14 30 30 H 1.08999 * 110.32708 * 98.36755 * 17 15 14 31 31 H 1.08993 * 110.32831 * 118.89639 * 18 17 15 32 32 H 1.09004 * 110.32067 * 241.00085 * 18 17 15 33 33 H 1.09004 * 110.41438 * 142.63491 * 19 18 17 34 34 H 1.09004 * 110.41157 * 264.96190 * 19 18 17 35 35 H 1.00900 * 111.00444 * 277.82124 * 20 15 14 36 36 H 1.08004 * 119.91942 * 180.02562 * 21 12 11 37 37 H 1.07998 * 120.08365 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 3.7030 1.3464 0.0006 5 1 1.8842 2.3963 -1.2125 6 1 1.8841 2.3965 1.2125 7 6 2.0083 -1.2113 0.0005 8 1 3.0494 -1.2336 0.2871 9 6 1.3536 -2.4043 -0.3734 10 6 0.2254 -2.3583 -1.2160 11 6 -0.4054 -3.5144 -1.5686 12 6 0.0699 -4.7421 -1.1053 13 7 -0.5746 -5.9159 -1.4729 14 6 -0.0781 -7.2065 -0.9890 15 6 -0.9610 -8.3301 -1.5360 16 1 -1.9740 -8.2418 -1.1435 17 6 -0.3630 -9.7075 -1.1778 18 6 -0.6351 -10.5951 -2.4097 19 6 -1.3753 -9.6795 -3.4083 20 7 -0.9765 -8.3003 -3.0212 21 6 1.1903 -4.7957 -0.2749 22 6 1.8282 -3.6473 0.0900 23 1 -0.4850 0.8400 -0.0004 24 1 -0.1411 -1.4093 -1.5786 25 1 -1.2725 -3.4804 -2.2115 26 1 -1.3534 -5.8812 -2.0500 27 1 0.9474 -7.3517 -1.3285 28 1 -0.1057 -7.2210 0.1006 29 1 0.7095 -9.6208 -1.0032 30 1 -0.8573 -10.1175 -0.2971 31 1 0.3036 -10.9442 -2.8398 32 1 -1.2629 -11.4427 -2.1344 33 1 -1.0581 -9.8949 -4.4287 34 1 -2.4537 -9.8050 -3.3118 35 1 -1.6399 -7.6210 -3.3624 36 1 1.5530 -5.7493 0.0796 37 1 2.6948 -3.6902 0.7331 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000236235745.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:15 Heat of formation + Delta-G solvation = 19.826512 kcal Electronic energy + Delta-G solvation = -17035.229378 eV Core-core repulsion = 14390.409252 eV Total energy + Delta-G solvation = -2644.820126 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.91291 -37.65225 -34.84459 -32.90384 -30.40952 -30.32059 -29.29997 -28.05860 -25.10239 -23.68230 -21.37572 -20.97232 -20.10736 -19.86640 -17.13068 -16.99463 -16.06285 -15.48118 -14.93618 -14.65898 -14.30166 -13.74461 -13.13100 -12.77766 -12.66650 -12.50901 -12.24766 -12.00470 -11.77219 -11.60395 -11.49756 -11.16322 -11.12396 -10.90250 -10.70236 -10.63860 -10.39833 -9.60845 -9.24502 -9.17356 -8.67679 -8.46412 -7.42621 -6.59355 -6.31511 -3.97778 2.94646 3.15859 3.18712 3.24175 3.40601 4.01375 4.09622 4.32217 4.62179 4.68634 4.81954 4.87240 5.06965 5.32747 5.39743 5.51385 5.66372 5.70367 5.85417 5.88199 5.94631 6.04921 6.21039 6.34099 6.37234 6.67019 6.91969 7.12250 7.19733 7.26521 7.36812 7.65725 7.72572 7.86219 8.20833 8.40120 8.56134 8.74336 8.86297 9.11551 9.21294 10.42373 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.067613 B = 0.003894 C = 0.003778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 414.020233 B = 7189.700653 C = 7410.344317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.074 3.926 3 Si 0.902 3.098 4 H -0.263 1.263 5 H -0.275 1.275 6 H -0.278 1.278 7 C -0.467 4.467 8 H 0.072 0.928 9 C 0.073 3.927 10 C -0.122 4.122 11 C -0.165 4.165 12 C 0.096 3.904 13 N -0.757 5.757 14 C 0.155 3.845 15 C 0.055 3.945 16 H 0.050 0.950 17 C -0.118 4.118 18 C -0.123 4.123 19 C 0.034 3.966 20 N -0.656 5.656 21 C -0.160 4.160 22 C -0.188 4.188 23 H 0.275 0.725 24 H 0.118 0.882 25 H 0.085 0.915 26 H 0.381 0.619 27 H 0.053 0.947 28 H 0.047 0.953 29 H 0.076 0.924 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.079 0.921 34 H 0.037 0.963 35 H 0.337 0.663 36 H 0.087 0.913 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.704 -14.737 -3.787 15.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.141 4.141 3 Si 0.727 3.273 4 H -0.186 1.186 5 H -0.200 1.200 6 H -0.203 1.203 7 C -0.498 4.498 8 H 0.090 0.910 9 C 0.070 3.930 10 C -0.142 4.142 11 C -0.187 4.187 12 C -0.001 4.001 13 N -0.393 5.393 14 C 0.029 3.971 15 C -0.055 4.055 16 H 0.068 0.932 17 C -0.157 4.157 18 C -0.162 4.162 19 C -0.095 4.095 20 N -0.285 5.285 21 C -0.183 4.183 22 C -0.208 4.208 23 H 0.085 0.915 24 H 0.136 0.864 25 H 0.103 0.897 26 H 0.213 0.787 27 H 0.072 0.928 28 H 0.065 0.935 29 H 0.094 0.906 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.097 0.903 34 H 0.055 0.945 35 H 0.153 0.847 36 H 0.105 0.895 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.028 -14.738 -3.786 15.515 hybrid contribution -1.017 0.788 0.074 1.289 sum -4.045 -13.950 -3.712 14.992 Atomic orbital electron populations 1.69865 1.07348 1.28416 1.38066 1.25788 0.94645 1.00852 0.92767 0.86376 0.81007 0.81657 0.78259 1.18647 1.20001 1.20338 1.19393 0.97873 0.91358 1.41209 0.90959 1.17489 0.92497 0.91995 0.90996 1.20914 0.98085 0.96335 0.98855 1.20028 1.01540 0.91955 1.05145 1.17349 0.95824 0.85186 1.01742 1.43732 1.34623 1.02504 1.58398 1.20992 0.96908 0.82387 0.96814 1.22729 0.98311 0.95598 0.88824 0.93197 1.22284 1.02047 0.93702 0.97659 1.22272 1.00765 0.97570 0.95555 1.22923 0.97263 0.89625 0.99707 1.63658 1.52161 1.04624 1.08082 1.19852 0.97887 0.97035 1.03486 1.20558 1.02629 0.92695 1.04940 0.91458 0.86399 0.89658 0.78728 0.92842 0.93478 0.90567 0.91291 0.91036 0.91584 0.90300 0.94505 0.84712 0.89519 0.89170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.85 10.96 55.54 0.61 -21.24 16 2 C 0.07 1.95 5.13 -17.34 -0.09 1.86 16 3 Si 0.90 19.56 29.59 -169.99 -5.03 14.52 16 4 H -0.26 -5.64 7.11 56.52 0.40 -5.24 16 5 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 6 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 7 C -0.47 -12.96 9.03 -37.88 -0.34 -13.30 16 8 H 0.07 1.94 7.91 -52.48 -0.41 1.53 16 9 C 0.07 2.02 5.57 -106.79 -0.60 1.43 16 10 C -0.12 -3.27 8.63 -39.26 -0.34 -3.61 16 11 C -0.16 -3.95 9.82 -39.77 -0.39 -4.34 16 12 C 0.10 2.16 6.67 -83.69 -0.56 1.60 16 13 N -0.76 -13.53 5.58 -58.49 -0.33 -13.86 16 14 C 0.15 2.35 4.54 -4.04 -0.02 2.33 16 15 C 0.06 0.66 3.28 -66.07 -0.22 0.44 16 16 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 17 C -0.12 -1.18 6.55 -25.35 -0.17 -1.34 16 18 C -0.12 -1.08 7.00 -25.35 -0.18 -1.26 16 19 C 0.03 0.32 7.47 -2.11 -0.02 0.31 16 20 N -0.66 -7.68 7.10 -102.64 -0.73 -8.41 16 21 C -0.16 -3.74 9.23 -39.77 -0.37 -4.10 16 22 C -0.19 -4.80 9.74 -39.26 -0.38 -5.18 16 23 H 0.27 6.77 8.30 -40.82 -0.34 6.43 16 24 H 0.12 3.27 6.17 -52.49 -0.32 2.94 16 25 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 26 H 0.38 6.13 7.76 -40.82 -0.32 5.82 16 27 H 0.05 0.88 7.83 -51.93 -0.41 0.47 16 28 H 0.05 0.73 7.93 -51.93 -0.41 0.32 16 29 H 0.08 0.79 7.79 -51.93 -0.40 0.38 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.34 3.73 8.27 -39.29 -0.32 3.41 16 36 H 0.09 1.81 6.68 -52.48 -0.35 1.46 16 37 H 0.09 2.18 8.06 -52.49 -0.42 1.75 16 LS Contribution 300.82 15.07 4.53 4.53 Total: -1.00 -29.07 300.82 -10.07 -39.14 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: -5.47 Total: 10.48 kcal Atomic # 6 Polarization: -21.51 SS G_CDS: -3.66 Total: -25.17 kcal Atomic # 7 Polarization: -43.06 SS G_CDS: -0.45 Total: -43.51 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -5.03 Total: 14.52 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -29.07 -10.07 -39.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236235745.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.965 kcal (2) G-P(sol) polarization free energy of solvation -29.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds