Wall clock time and date at job start Mon Mar 30 2020 03:36:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30901 * 1 3 3 Si 1.86798 * 119.99975 * 2 1 4 4 H 1.48502 * 109.47235 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46839 * 299.99841 * 3 2 1 6 6 H 1.48504 * 109.47156 * 59.99364 * 3 2 1 7 7 C 1.39864 * 119.99979 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00058 * 197.83790 * 7 2 1 9 9 C 1.41135 * 120.00366 * 17.84171 * 7 2 1 10 10 C 1.40890 * 120.15191 * 24.74039 * 9 7 2 11 11 C 1.36345 * 119.83294 * 180.27594 * 10 9 7 12 12 C 1.39565 * 120.16222 * 359.50629 * 11 10 9 13 13 N 1.38860 * 119.84070 * 180.25420 * 12 11 10 14 14 C 1.46502 * 119.99628 * 179.97438 * 13 12 11 15 15 C 1.53006 * 109.46871 * 179.97438 * 14 13 12 16 16 H 1.09000 * 110.36819 * 295.70236 * 15 14 13 17 17 C 1.54381 * 110.40990 * 173.35459 * 15 14 13 18 18 C 1.54260 * 105.05678 * 217.37109 * 17 15 14 19 19 C 1.54378 * 105.06174 * 359.97438 * 18 17 15 20 20 N 1.48555 * 110.41030 * 58.04900 * 15 14 13 21 21 C 1.39566 * 120.31551 * 0.22636 * 12 11 10 22 22 C 1.36341 * 120.16243 * 0.02596 * 21 12 11 23 23 H 0.96997 * 120.00349 * 0.02562 * 1 2 3 24 24 H 1.07996 * 120.08616 * 0.03581 * 10 9 7 25 25 H 1.07997 * 119.91543 * 179.77347 * 11 10 9 26 26 H 0.96999 * 119.99955 * 359.97438 * 13 12 11 27 27 H 1.09000 * 109.47054 * 299.99862 * 14 13 12 28 28 H 1.09007 * 109.47067 * 60.00003 * 14 13 12 29 29 H 1.09001 * 110.32202 * 336.26124 * 17 15 14 30 30 H 1.08999 * 110.32708 * 98.36755 * 17 15 14 31 31 H 1.08993 * 110.32831 * 118.89639 * 18 17 15 32 32 H 1.09004 * 110.32067 * 241.00085 * 18 17 15 33 33 H 1.09004 * 110.41438 * 142.63491 * 19 18 17 34 34 H 1.09004 * 110.41157 * 264.96190 * 19 18 17 35 35 H 1.00900 * 111.00444 * 277.82124 * 20 15 14 36 36 H 1.08004 * 119.91942 * 180.02562 * 21 12 11 37 37 H 1.07998 * 120.08365 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 3.7030 1.3464 0.0006 5 1 1.8842 2.3963 -1.2125 6 1 1.8841 2.3965 1.2125 7 6 2.0083 -1.2113 0.0005 8 1 3.0494 -1.2336 0.2871 9 6 1.3536 -2.4043 -0.3734 10 6 0.2254 -2.3583 -1.2160 11 6 -0.4054 -3.5144 -1.5686 12 6 0.0699 -4.7421 -1.1053 13 7 -0.5746 -5.9159 -1.4729 14 6 -0.0781 -7.2065 -0.9890 15 6 -0.9610 -8.3301 -1.5360 16 1 -1.9740 -8.2418 -1.1435 17 6 -0.3630 -9.7075 -1.1778 18 6 -0.6351 -10.5951 -2.4097 19 6 -1.3753 -9.6795 -3.4083 20 7 -0.9765 -8.3003 -3.0212 21 6 1.1903 -4.7957 -0.2749 22 6 1.8282 -3.6473 0.0900 23 1 -0.4850 0.8400 -0.0004 24 1 -0.1411 -1.4093 -1.5786 25 1 -1.2725 -3.4804 -2.2115 26 1 -1.3534 -5.8812 -2.0500 27 1 0.9474 -7.3517 -1.3285 28 1 -0.1057 -7.2210 0.1006 29 1 0.7095 -9.6208 -1.0032 30 1 -0.8573 -10.1175 -0.2971 31 1 0.3036 -10.9442 -2.8398 32 1 -1.2629 -11.4427 -2.1344 33 1 -1.0581 -9.8949 -4.4287 34 1 -2.4537 -9.8050 -3.3118 35 1 -1.6399 -7.6210 -3.3624 36 1 1.5530 -5.7493 0.0796 37 1 2.6948 -3.6902 0.7331 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236235745.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:14 Heat of formation + Delta-G solvation = 1.400788 kcal Electronic energy + Delta-G solvation = -17036.028378 eV Core-core repulsion = 14390.409252 eV Total energy + Delta-G solvation = -2645.619126 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.07481 -39.23711 -36.50322 -34.69075 -31.85724 -31.21805 -31.07411 -29.67822 -26.61442 -25.25366 -22.88254 -22.26381 -21.55408 -21.08276 -19.09910 -18.02063 -17.40160 -17.18412 -16.45250 -15.74565 -15.64488 -15.44354 -14.55608 -14.34818 -14.09932 -13.85333 -13.68989 -13.55722 -13.02495 -12.96779 -12.77007 -12.66542 -12.56404 -12.31085 -12.13745 -11.93922 -11.50901 -11.39028 -11.18213 -11.05259 -10.27953 -9.52689 -9.38926 -8.54136 -8.13660 -5.99352 1.10819 1.19906 1.40928 1.55454 1.59287 2.28633 2.85147 2.86464 3.28921 3.78882 3.81157 3.86746 4.11054 4.25912 4.35958 4.47032 4.49474 4.65471 4.71344 4.75939 4.94052 4.99051 5.03050 5.06158 5.19438 5.21248 5.24689 5.32889 5.43473 5.74962 5.77208 5.84987 5.94229 6.19818 6.35509 6.42483 6.69069 6.89441 7.09705 7.15196 7.32146 8.49662 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.067613 B = 0.003894 C = 0.003778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 414.020233 B = 7189.700653 C = 7410.344317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.031 3.969 3 Si 0.977 3.023 4 H -0.261 1.261 5 H -0.266 1.266 6 H -0.268 1.268 7 C -0.506 4.506 8 H 0.067 0.933 9 C 0.035 3.965 10 C -0.141 4.141 11 C -0.175 4.175 12 C 0.114 3.886 13 N -0.746 5.746 14 C 0.153 3.847 15 C 0.062 3.938 16 H 0.057 0.943 17 C -0.118 4.118 18 C -0.121 4.121 19 C 0.034 3.966 20 N -0.674 5.674 21 C -0.168 4.168 22 C -0.198 4.198 23 H 0.282 0.718 24 H 0.100 0.900 25 H 0.107 0.893 26 H 0.392 0.608 27 H 0.043 0.957 28 H 0.048 0.952 29 H 0.069 0.931 30 H 0.084 0.916 31 H 0.070 0.930 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.049 0.951 35 H 0.339 0.661 36 H 0.112 0.888 37 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.244 -16.276 -4.113 17.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C -0.180 4.180 3 Si 0.799 3.201 4 H -0.185 1.185 5 H -0.191 1.191 6 H -0.193 1.193 7 C -0.538 4.538 8 H 0.085 0.915 9 C 0.032 3.968 10 C -0.161 4.161 11 C -0.197 4.197 12 C 0.014 3.986 13 N -0.381 5.381 14 C 0.028 3.972 15 C -0.048 4.048 16 H 0.075 0.925 17 C -0.157 4.157 18 C -0.159 4.159 19 C -0.095 4.095 20 N -0.304 5.304 21 C -0.191 4.191 22 C -0.218 4.218 23 H 0.092 0.908 24 H 0.118 0.882 25 H 0.125 0.875 26 H 0.226 0.774 27 H 0.061 0.939 28 H 0.066 0.934 29 H 0.088 0.912 30 H 0.103 0.897 31 H 0.089 0.911 32 H 0.103 0.897 33 H 0.101 0.899 34 H 0.067 0.933 35 H 0.154 0.846 36 H 0.130 0.870 37 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -3.591 -16.332 -4.127 17.224 hybrid contribution -0.909 1.067 0.141 1.409 sum -4.500 -15.265 -3.986 16.406 Atomic orbital electron populations 1.69921 1.08739 1.29719 1.38668 1.26616 0.95476 1.04100 0.91832 0.85238 0.79353 0.76809 0.78697 1.18495 1.19089 1.19324 1.19611 0.97939 0.92782 1.43448 0.91524 1.17813 0.93672 0.92980 0.92364 1.20860 0.98761 0.96687 0.99757 1.20230 1.02149 0.91791 1.05577 1.17465 0.94992 0.86320 0.99781 1.43797 1.34341 1.02158 1.57788 1.21143 0.97128 0.82004 0.96975 1.22633 0.97943 0.95178 0.89091 0.92491 1.22311 1.01696 0.92773 0.98911 1.22291 1.01118 0.97785 0.94697 1.22992 0.98125 0.88319 1.00089 1.63639 1.52838 1.06075 1.07865 1.20098 0.98018 0.97395 1.03553 1.20758 1.03023 0.92966 1.05069 0.90765 0.88183 0.87495 0.77438 0.93922 0.93375 0.91224 0.89731 0.91093 0.89663 0.89923 0.93273 0.84561 0.86991 0.88713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -46.64 10.96 21.82 0.24 -46.40 16 2 C 0.03 1.69 5.13 85.23 0.44 2.12 16 3 Si 0.98 40.78 29.59 68.60 2.03 42.81 16 4 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 5 H -0.27 -10.63 7.11 99.48 0.71 -9.93 16 6 H -0.27 -10.69 7.11 99.48 0.71 -9.99 16 7 C -0.51 -29.14 9.03 23.37 0.21 -28.92 16 8 H 0.07 3.73 7.91 -2.91 -0.02 3.71 16 9 C 0.03 1.98 5.57 -21.27 -0.12 1.86 16 10 C -0.14 -7.75 8.63 22.48 0.19 -7.56 16 11 C -0.18 -8.39 9.82 22.15 0.22 -8.17 16 12 C 0.11 5.01 6.67 38.67 0.26 5.27 16 13 N -0.75 -25.20 5.58 -338.97 -1.89 -27.09 16 14 C 0.15 4.31 4.54 86.38 0.39 4.70 16 15 C 0.06 1.31 3.28 45.07 0.15 1.45 16 16 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 17 C -0.12 -2.02 6.55 31.49 0.21 -1.81 16 18 C -0.12 -1.75 7.00 31.49 0.22 -1.53 16 19 C 0.03 0.54 7.47 86.42 0.65 1.18 16 20 N -0.67 -14.19 7.10 -478.65 -3.40 -17.59 16 21 C -0.17 -7.73 9.23 22.15 0.20 -7.52 16 22 C -0.20 -10.28 9.74 22.48 0.22 -10.06 16 23 H 0.28 14.15 8.30 -92.71 -0.77 13.38 16 24 H 0.10 5.78 6.17 -2.91 -0.02 5.76 16 25 H 0.11 4.53 8.06 -2.91 -0.02 4.51 16 26 H 0.39 11.72 7.76 -92.71 -0.72 11.00 16 27 H 0.04 1.32 7.83 -2.39 -0.02 1.31 16 28 H 0.05 1.38 7.93 -2.38 -0.02 1.36 16 29 H 0.07 1.28 7.79 -2.39 -0.02 1.27 16 30 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 33 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 34 H 0.05 0.67 8.14 -2.38 -0.02 0.65 16 35 H 0.34 6.74 8.27 -89.69 -0.74 6.00 16 36 H 0.11 4.50 6.68 -2.91 -0.02 4.48 16 37 H 0.09 4.67 8.06 -2.91 -0.02 4.65 16 Total: -1.00 -63.46 300.82 -0.17 -63.63 By element: Atomic # 1 Polarization: 34.02 SS G_CDS: -0.39 Total: 33.63 kcal Atomic # 6 Polarization: -52.24 SS G_CDS: 3.24 Total: -49.00 kcal Atomic # 7 Polarization: -86.03 SS G_CDS: -5.05 Total: -91.08 kcal Atomic # 14 Polarization: 40.78 SS G_CDS: 2.03 Total: 42.81 kcal Total: -63.46 -0.17 -63.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236235745.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.033 kcal (2) G-P(sol) polarization free energy of solvation -63.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds