Wall clock time and date at job start Mon Mar 30 2020 04:16:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46891 * 1 3 3 C 1.46964 * 111.00258 * 2 1 4 4 C 1.53043 * 109.36462 * 183.19068 * 3 2 1 5 5 N 1.46957 * 109.36710 * 301.59769 * 4 3 2 6 6 C 1.39676 * 111.00492 * 183.18939 * 5 4 3 7 7 C 1.38911 * 120.07062 * 94.89142 * 6 5 4 8 8 C 1.38107 * 119.91935 * 179.77291 * 7 6 5 9 9 C 1.38288 * 120.07561 * 0.50783 * 8 7 6 10 10 C 1.38278 * 120.14949 * 359.74650 * 9 8 7 11 11 C 1.38108 * 120.07544 * 359.97438 * 10 9 8 12 12 C 1.46963 * 110.87820 * 59.32428 * 5 4 3 13 13 H 1.08991 * 109.50787 * 60.65993 * 12 5 4 14 14 C 1.50699 * 109.48728 * 180.71417 * 12 5 4 15 15 H 1.07996 * 120.00463 * 6.04827 * 14 12 5 16 16 C 1.37881 * 119.99720 * 186.04710 * 14 12 5 17 17 N 1.31514 * 119.99679 * 196.26760 * 16 14 12 18 18 Si 1.86796 * 120.00320 * 16.26335 * 16 14 12 19 19 H 1.48489 * 109.47375 * 180.02562 * 18 16 14 20 20 H 1.48501 * 109.47092 * 300.00621 * 18 16 14 21 21 H 1.48509 * 109.46702 * 60.00056 * 18 16 14 22 22 C 1.46955 * 111.00138 * 123.80431 * 2 1 3 23 23 H 1.09004 * 109.47242 * 296.19960 * 1 2 3 24 24 H 1.09002 * 109.47597 * 56.19645 * 1 2 3 25 25 H 1.08996 * 109.47686 * 176.20093 * 1 2 3 26 26 H 1.08997 * 109.48641 * 303.15941 * 3 2 1 27 27 H 1.08999 * 109.48575 * 63.22180 * 3 2 1 28 28 H 1.08999 * 109.49373 * 61.56620 * 4 3 2 29 29 H 1.09005 * 109.48823 * 181.61195 * 4 3 2 30 30 H 1.07994 * 120.04195 * 0.02562 * 7 6 5 31 31 H 1.08005 * 119.96225 * 180.25424 * 8 7 6 32 32 H 1.07997 * 119.92460 * 179.72237 * 9 8 7 33 33 H 1.07996 * 119.96338 * 180.02562 * 10 9 8 34 34 H 1.08007 * 120.03529 * 180.02562 * 11 10 9 35 35 H 0.97003 * 120.00270 * 354.92449 * 17 16 14 36 36 H 1.08996 * 109.49085 * 56.84096 * 22 2 1 37 37 H 1.09007 * 109.48911 * 296.77524 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9956 1.3720 0.0000 4 6 3.5234 1.3291 -0.0804 5 7 4.0501 0.5658 1.0597 6 6 5.4468 0.5658 1.0597 7 6 6.1429 1.5040 1.8112 8 6 7.5240 1.4982 1.8126 9 6 8.2138 0.5663 1.0588 10 6 7.5240 -0.3657 0.3055 11 6 6.1429 -0.3691 0.3040 12 6 3.5234 -0.8062 1.0596 13 1 3.8253 -1.3119 0.1425 14 6 4.0687 -1.5540 2.2490 15 1 4.6596 -1.0347 2.9888 16 6 3.8130 -2.9013 2.3925 17 7 3.9998 -3.4857 3.5558 18 14 3.2011 -3.8964 0.9349 19 1 3.0033 -5.3089 1.3479 20 1 1.9113 -3.3351 0.4588 21 1 4.2018 -3.8359 -0.1607 22 6 1.9956 -0.7633 1.1400 23 1 -0.3634 0.4537 0.9221 24 1 -0.3634 0.5717 -0.8539 25 1 -0.3634 -1.0253 -0.0681 26 1 1.6013 1.9129 -0.8602 27 1 1.6938 1.8774 0.9174 28 1 3.8253 0.8479 -1.0107 29 1 3.9177 2.3449 -0.0516 30 1 5.6048 2.2346 2.3968 31 1 8.0659 2.2248 2.3999 32 1 9.2938 0.5668 1.0582 33 1 8.0657 -1.0923 -0.2817 34 1 5.6047 -1.0977 -0.2843 35 1 4.3867 -2.9871 4.2925 36 1 1.6012 -1.7790 1.1109 37 1 1.6937 -0.2821 2.0704 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000250416550.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:57 Heat of formation + Delta-G solvation = 50.206763 kcal Electronic energy + Delta-G solvation = -18512.943123 eV Core-core repulsion = 15869.440383 eV Total energy + Delta-G solvation = -2643.502740 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.62512 -37.67026 -34.76857 -32.95349 -30.50025 -30.15484 -29.64365 -26.76909 -25.05054 -23.28360 -22.24359 -21.39629 -20.74722 -18.80984 -17.57332 -16.79930 -15.45157 -14.81128 -14.64253 -14.38783 -14.26468 -14.06003 -13.60242 -13.45466 -12.92128 -12.65650 -12.09502 -11.88434 -11.80914 -11.72888 -11.32771 -11.16644 -10.88636 -10.59906 -10.56575 -10.26911 -10.12199 -9.70735 -8.88903 -8.37502 -8.34058 -8.23787 -7.83050 -7.33669 -6.49304 -4.08671 1.97248 2.00928 3.35186 3.40606 3.57309 4.36085 4.43833 4.47975 4.59799 5.23228 5.39061 5.45671 5.49014 5.55370 5.63272 5.69242 5.78356 5.82690 5.99773 6.02971 6.11828 6.12622 6.26605 6.27834 6.39501 6.48239 6.60726 6.66656 6.91199 7.00377 7.08323 7.24852 7.36693 7.52309 7.56577 7.71973 8.09219 8.30104 8.41079 8.96543 9.59466 10.91923 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.017087 B = 0.011457 C = 0.007899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.275009 B = 2443.355782 C = 3544.098215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.553 5.553 3 C 0.062 3.938 4 C 0.062 3.938 5 N -0.499 5.499 6 C 0.143 3.857 7 C -0.118 4.118 8 C -0.120 4.120 9 C -0.144 4.144 10 C -0.113 4.113 11 C -0.131 4.131 12 C 0.200 3.800 13 H 0.007 0.993 14 C -0.585 4.585 15 H 0.065 0.935 16 C 0.033 3.967 17 N -0.902 5.902 18 Si 1.039 2.961 19 H -0.285 1.285 20 H -0.271 1.271 21 H -0.283 1.283 22 C 0.051 3.949 23 H 0.021 0.979 24 H 0.059 0.941 25 H 0.064 0.936 26 H 0.070 0.930 27 H 0.037 0.963 28 H 0.038 0.962 29 H 0.070 0.930 30 H 0.118 0.882 31 H 0.114 0.886 32 H 0.111 0.889 33 H 0.112 0.888 34 H 0.119 0.881 35 H 0.269 0.731 36 H 0.080 0.920 37 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.286 8.886 -7.767 11.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.278 5.278 3 C -0.067 4.067 4 C -0.064 4.064 5 N -0.220 5.220 6 C 0.048 3.952 7 C -0.138 4.138 8 C -0.138 4.138 9 C -0.163 4.163 10 C -0.132 4.132 11 C -0.151 4.151 12 C 0.093 3.907 13 H 0.024 0.976 14 C -0.624 4.624 15 H 0.083 0.917 16 C -0.173 4.173 17 N -0.536 5.536 18 Si 0.868 3.132 19 H -0.210 1.210 20 H -0.197 1.197 21 H -0.210 1.210 22 C -0.076 4.076 23 H 0.039 0.961 24 H 0.078 0.922 25 H 0.083 0.917 26 H 0.088 0.912 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.088 0.912 30 H 0.136 0.864 31 H 0.132 0.868 32 H 0.129 0.871 33 H 0.131 0.869 34 H 0.137 0.863 35 H 0.079 0.921 36 H 0.098 0.902 37 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -0.297 7.369 -8.205 11.033 hybrid contribution 0.470 1.402 0.683 1.629 sum 0.174 8.771 -7.522 11.556 Atomic orbital electron populations 1.22291 0.88503 1.01743 0.99601 1.62317 1.06905 1.13240 1.45340 1.22070 0.94557 0.90054 1.00019 1.22126 0.94301 0.97898 0.92106 1.59750 1.04061 1.17874 1.40274 1.18645 0.88875 0.93995 0.93724 1.20892 0.93525 0.99979 0.99383 1.20889 0.93995 0.99207 0.99729 1.20922 0.99009 0.96985 0.99366 1.20924 0.94165 0.98443 0.99692 1.21597 0.94465 0.99676 0.99344 1.19721 0.90020 0.83652 0.97271 0.97593 1.21898 1.37095 0.95039 1.08366 0.91734 1.25652 0.95486 0.95419 1.00705 1.70837 1.39864 1.41647 1.01250 0.84135 0.77317 0.76454 0.75338 1.21046 1.19739 1.20957 1.22950 0.97369 0.97686 0.89584 0.96086 0.92207 0.91710 0.91175 0.94491 0.94384 0.91189 0.86443 0.86830 0.87069 0.86943 0.86344 0.92095 0.90181 0.94570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 9.60 60.06 0.58 1.00 16 2 N -0.55 -10.40 4.97 -242.76 -1.21 -11.61 16 3 C 0.06 1.03 5.62 -3.77 -0.02 1.01 16 4 C 0.06 1.11 5.55 -3.77 -0.02 1.09 16 5 N -0.50 -10.71 4.52 -164.73 -0.74 -11.46 16 6 C 0.14 2.97 3.71 -83.79 -0.31 2.66 16 7 C -0.12 -2.22 9.97 -39.38 -0.39 -2.61 16 8 C -0.12 -1.97 10.04 -39.61 -0.40 -2.37 16 9 C -0.14 -2.35 10.04 -39.55 -0.40 -2.75 16 10 C -0.11 -2.02 10.04 -39.61 -0.40 -2.42 16 11 C -0.13 -2.68 8.70 -39.38 -0.34 -3.02 16 12 C 0.20 4.78 1.05 -68.80 -0.07 4.71 16 13 H 0.01 0.16 5.17 -51.93 -0.27 -0.10 16 14 C -0.59 -16.24 7.82 -34.44 -0.27 -16.51 16 15 H 0.06 2.00 7.68 -52.49 -0.40 1.60 16 16 C 0.03 0.95 5.36 -17.82 -0.10 0.85 16 17 N -0.90 -27.46 13.70 55.43 0.76 -26.70 16 18 Si 1.04 25.05 26.36 -169.99 -4.48 20.57 16 19 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 20 H -0.27 -6.07 5.52 56.52 0.31 -5.76 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 C 0.05 1.15 4.58 -3.76 -0.02 1.13 16 23 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 24 H 0.06 0.77 8.13 -51.93 -0.42 0.35 16 25 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.07 0.97 8.13 -51.93 -0.42 0.55 16 27 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.07 1.10 8.13 -51.93 -0.42 0.68 16 30 H 0.12 2.07 8.06 -52.49 -0.42 1.64 16 31 H 0.11 1.53 8.06 -52.48 -0.42 1.10 16 32 H 0.11 1.48 8.06 -52.49 -0.42 1.05 16 33 H 0.11 1.74 8.06 -52.49 -0.42 1.31 16 34 H 0.12 2.54 6.41 -52.48 -0.34 2.21 16 35 H 0.27 8.24 8.73 -40.82 -0.36 7.88 16 36 H 0.08 1.87 4.74 -51.93 -0.25 1.62 16 37 H 0.04 0.85 8.14 -51.92 -0.42 0.43 16 LS Contribution 291.41 15.07 4.39 4.39 Total: -1.00 -30.22 291.41 -9.01 -39.23 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -5.57 Total: 2.80 kcal Atomic # 6 Polarization: -15.07 SS G_CDS: -2.16 Total: -17.23 kcal Atomic # 7 Polarization: -48.57 SS G_CDS: -1.19 Total: -49.76 kcal Atomic # 14 Polarization: 25.05 SS G_CDS: -4.48 Total: 20.57 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -30.22 -9.01 -39.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250416550.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.438 kcal (2) G-P(sol) polarization free energy of solvation -30.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.231 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds