Wall clock time and date at job start Mon Mar 30 2020 04:16:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46891 * 1 3 3 C 1.46964 * 111.00258 * 2 1 4 4 C 1.53043 * 109.36462 * 183.19068 * 3 2 1 5 5 N 1.46957 * 109.36710 * 301.59769 * 4 3 2 6 6 C 1.39676 * 111.00492 * 183.18939 * 5 4 3 7 7 C 1.38911 * 120.07062 * 94.89142 * 6 5 4 8 8 C 1.38107 * 119.91935 * 179.77291 * 7 6 5 9 9 C 1.38288 * 120.07561 * 0.50783 * 8 7 6 10 10 C 1.38278 * 120.14949 * 359.74650 * 9 8 7 11 11 C 1.38108 * 120.07544 * 359.97438 * 10 9 8 12 12 C 1.46963 * 110.87820 * 59.32428 * 5 4 3 13 13 H 1.08991 * 109.50787 * 60.65993 * 12 5 4 14 14 C 1.50699 * 109.48728 * 180.71417 * 12 5 4 15 15 H 1.07996 * 120.00463 * 6.04827 * 14 12 5 16 16 C 1.37881 * 119.99720 * 186.04710 * 14 12 5 17 17 N 1.31514 * 119.99679 * 196.26760 * 16 14 12 18 18 Si 1.86796 * 120.00320 * 16.26335 * 16 14 12 19 19 H 1.48489 * 109.47375 * 180.02562 * 18 16 14 20 20 H 1.48501 * 109.47092 * 300.00621 * 18 16 14 21 21 H 1.48509 * 109.46702 * 60.00056 * 18 16 14 22 22 C 1.46955 * 111.00138 * 123.80431 * 2 1 3 23 23 H 1.09004 * 109.47242 * 296.19960 * 1 2 3 24 24 H 1.09002 * 109.47597 * 56.19645 * 1 2 3 25 25 H 1.08996 * 109.47686 * 176.20093 * 1 2 3 26 26 H 1.08997 * 109.48641 * 303.15941 * 3 2 1 27 27 H 1.08999 * 109.48575 * 63.22180 * 3 2 1 28 28 H 1.08999 * 109.49373 * 61.56620 * 4 3 2 29 29 H 1.09005 * 109.48823 * 181.61195 * 4 3 2 30 30 H 1.07994 * 120.04195 * 0.02562 * 7 6 5 31 31 H 1.08005 * 119.96225 * 180.25424 * 8 7 6 32 32 H 1.07997 * 119.92460 * 179.72237 * 9 8 7 33 33 H 1.07996 * 119.96338 * 180.02562 * 10 9 8 34 34 H 1.08007 * 120.03529 * 180.02562 * 11 10 9 35 35 H 0.97003 * 120.00270 * 354.92449 * 17 16 14 36 36 H 1.08996 * 109.49085 * 56.84096 * 22 2 1 37 37 H 1.09007 * 109.48911 * 296.77524 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9956 1.3720 0.0000 4 6 3.5234 1.3291 -0.0804 5 7 4.0501 0.5658 1.0597 6 6 5.4468 0.5658 1.0597 7 6 6.1429 1.5040 1.8112 8 6 7.5240 1.4982 1.8126 9 6 8.2138 0.5663 1.0588 10 6 7.5240 -0.3657 0.3055 11 6 6.1429 -0.3691 0.3040 12 6 3.5234 -0.8062 1.0596 13 1 3.8253 -1.3119 0.1425 14 6 4.0687 -1.5540 2.2490 15 1 4.6596 -1.0347 2.9888 16 6 3.8130 -2.9013 2.3925 17 7 3.9998 -3.4857 3.5558 18 14 3.2011 -3.8964 0.9349 19 1 3.0033 -5.3089 1.3479 20 1 1.9113 -3.3351 0.4588 21 1 4.2018 -3.8359 -0.1607 22 6 1.9956 -0.7633 1.1400 23 1 -0.3634 0.4537 0.9221 24 1 -0.3634 0.5717 -0.8539 25 1 -0.3634 -1.0253 -0.0681 26 1 1.6013 1.9129 -0.8602 27 1 1.6938 1.8774 0.9174 28 1 3.8253 0.8479 -1.0107 29 1 3.9177 2.3449 -0.0516 30 1 5.6048 2.2346 2.3968 31 1 8.0659 2.2248 2.3999 32 1 9.2938 0.5668 1.0582 33 1 8.0657 -1.0923 -0.2817 34 1 5.6047 -1.0977 -0.2843 35 1 4.3867 -2.9871 4.2925 36 1 1.6012 -1.7790 1.1109 37 1 1.6937 -0.2821 2.0704 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000250416550.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:57 Heat of formation + Delta-G solvation = 29.037987 kcal Electronic energy + Delta-G solvation = -18513.861070 eV Core-core repulsion = 15869.440383 eV Total energy + Delta-G solvation = -2644.420687 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.17075 -39.11987 -36.27399 -35.02022 -32.17764 -31.63654 -31.12411 -28.18977 -26.92471 -24.73026 -23.83384 -22.98071 -22.24917 -20.46221 -19.68626 -18.30731 -16.89180 -16.49136 -16.09304 -15.97094 -15.76345 -15.56865 -15.42310 -14.87784 -14.34793 -14.15425 -13.94791 -13.53290 -13.40592 -13.13883 -12.75402 -12.67189 -12.49595 -12.25924 -12.01623 -11.96058 -11.81456 -11.51781 -10.94675 -10.48627 -9.84280 -9.74542 -9.31647 -8.92308 -8.77286 -6.36530 0.55299 0.57922 1.40388 1.45956 1.65850 2.41712 2.93285 2.97299 3.02414 3.16256 3.98356 4.12563 4.17550 4.19917 4.28398 4.29820 4.44404 4.45676 4.59772 4.64150 4.67278 4.74503 4.79117 4.83905 4.93238 4.97421 5.04152 5.20530 5.22465 5.54971 5.60692 5.66989 5.77154 5.98567 6.02405 6.08191 6.18014 6.32225 6.61033 6.74421 7.39842 8.62457 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.017087 B = 0.011457 C = 0.007899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.275009 B = 2443.355782 C = 3544.098215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.560 5.560 3 C 0.063 3.937 4 C 0.061 3.939 5 N -0.512 5.512 6 C 0.114 3.886 7 C -0.135 4.135 8 C -0.113 4.113 9 C -0.140 4.140 10 C -0.119 4.119 11 C -0.159 4.159 12 C 0.208 3.792 13 H -0.002 1.002 14 C -0.575 4.575 15 H 0.019 0.981 16 C -0.014 4.014 17 N -0.935 5.935 18 Si 1.075 2.925 19 H -0.286 1.286 20 H -0.243 1.243 21 H -0.270 1.270 22 C 0.063 3.937 23 H 0.022 0.978 24 H 0.092 0.908 25 H 0.065 0.935 26 H 0.109 0.891 27 H 0.033 0.967 28 H 0.034 0.966 29 H 0.092 0.908 30 H 0.122 0.878 31 H 0.150 0.850 32 H 0.150 0.850 33 H 0.134 0.866 34 H 0.098 0.902 35 H 0.251 0.749 36 H 0.069 0.931 37 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.367 10.327 -9.703 14.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.285 5.285 3 C -0.065 4.065 4 C -0.065 4.065 5 N -0.232 5.232 6 C 0.020 3.980 7 C -0.154 4.154 8 C -0.131 4.131 9 C -0.158 4.158 10 C -0.138 4.138 11 C -0.180 4.180 12 C 0.100 3.900 13 H 0.016 0.984 14 C -0.614 4.614 15 H 0.037 0.963 16 C -0.213 4.213 17 N -0.571 5.571 18 Si 0.898 3.102 19 H -0.212 1.212 20 H -0.167 1.167 21 H -0.196 1.196 22 C -0.066 4.066 23 H 0.041 0.959 24 H 0.111 0.889 25 H 0.084 0.916 26 H 0.127 0.873 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.110 0.890 30 H 0.140 0.860 31 H 0.168 0.832 32 H 0.167 0.833 33 H 0.152 0.848 34 H 0.116 0.884 35 H 0.060 0.940 36 H 0.087 0.913 37 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges -0.222 8.853 -10.154 13.474 hybrid contribution 0.553 1.092 1.314 1.796 sum 0.331 9.945 -8.841 13.311 Atomic orbital electron populations 1.22403 0.86073 1.02576 1.01145 1.62276 1.09134 1.14219 1.42905 1.22193 0.93641 0.89151 1.01522 1.22268 0.95264 0.98361 0.90610 1.59721 1.04913 1.16405 1.42194 1.18902 0.88773 0.95336 0.95035 1.21103 0.94858 1.00020 0.99407 1.21329 0.93163 0.99507 0.99150 1.21375 1.00944 0.95659 0.97823 1.21258 0.93277 0.99275 0.99994 1.21587 0.95866 1.00034 1.00501 1.19437 0.91010 0.84903 0.94667 0.98419 1.21920 1.35801 0.95235 1.08401 0.96278 1.26946 0.95449 0.96871 1.02004 1.70970 1.42483 1.41724 1.01896 0.83684 0.78612 0.75079 0.72846 1.21193 1.16747 1.19555 1.22570 0.96175 0.97622 0.90211 0.95913 0.88900 0.91632 0.87270 0.94912 0.94761 0.88990 0.85990 0.83247 0.83267 0.84821 0.88378 0.93954 0.91305 0.96805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 9.60 127.69 1.23 1.94 16 2 N -0.56 -19.96 4.97 -921.95 -4.58 -24.54 16 3 C 0.06 1.94 5.62 86.31 0.49 2.43 16 4 C 0.06 2.09 5.55 86.31 0.48 2.57 16 5 N -0.51 -22.15 4.52 -675.09 -3.05 -25.20 16 6 C 0.11 4.80 3.71 38.21 0.14 4.94 16 7 C -0.13 -4.96 9.97 22.40 0.22 -4.74 16 8 C -0.11 -3.46 10.04 22.25 0.22 -3.24 16 9 C -0.14 -4.17 10.04 22.29 0.22 -3.95 16 10 C -0.12 -4.12 10.04 22.25 0.22 -3.90 16 11 C -0.16 -6.62 8.70 22.40 0.19 -6.43 16 12 C 0.21 10.07 1.05 44.18 0.05 10.11 16 13 H 0.00 -0.08 5.17 -2.39 -0.01 -0.09 16 14 C -0.57 -33.20 7.82 25.60 0.20 -33.00 16 15 H 0.02 1.25 7.68 -2.91 -0.02 1.22 16 16 C -0.01 -0.81 5.36 84.66 0.45 -0.36 16 17 N -0.93 -59.22 13.70 21.45 0.29 -58.92 16 18 Si 1.08 51.03 26.36 68.60 1.81 52.84 16 19 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 20 H -0.24 -10.36 5.52 99.48 0.55 -9.81 16 21 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 22 C 0.06 2.79 4.58 86.31 0.40 3.19 16 23 H 0.02 0.62 8.14 -2.38 -0.02 0.61 16 24 H 0.09 2.00 8.13 -2.39 -0.02 1.98 16 25 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 26 H 0.11 2.56 8.13 -2.39 -0.02 2.54 16 27 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.09 2.72 8.13 -2.38 -0.02 2.70 16 30 H 0.12 4.25 8.06 -2.91 -0.02 4.23 16 31 H 0.15 3.45 8.06 -2.91 -0.02 3.42 16 32 H 0.15 3.31 8.06 -2.91 -0.02 3.28 16 33 H 0.13 3.91 8.06 -2.91 -0.02 3.89 16 34 H 0.10 4.35 6.41 -2.91 -0.02 4.34 16 35 H 0.25 16.30 8.73 -92.71 -0.81 15.49 16 36 H 0.07 3.18 4.74 -2.39 -0.01 3.17 16 37 H 0.01 0.66 8.14 -2.38 -0.02 0.64 16 Total: -1.00 -68.78 291.41 -0.17 -68.95 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: 0.84 Total: 17.30 kcal Atomic # 6 Polarization: -34.94 SS G_CDS: 4.52 Total: -30.43 kcal Atomic # 7 Polarization: -101.33 SS G_CDS: -7.34 Total: -108.67 kcal Atomic # 14 Polarization: 51.03 SS G_CDS: 1.81 Total: 52.84 kcal Total: -68.78 -0.17 -68.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250416550.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.989 kcal (2) G-P(sol) polarization free energy of solvation -68.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds