Wall clock time and date at job start Mon Mar 30 2020 04:05:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.50442 * 2 1 4 4 C 1.53041 * 109.48998 * 120.05966 * 2 1 3 5 5 N 1.46957 * 109.36654 * 61.56378 * 4 2 1 6 6 C 1.39673 * 111.00201 * 183.18601 * 5 4 2 7 7 C 1.38915 * 120.07162 * 94.26554 * 6 5 4 8 8 C 1.38108 * 119.92220 * 179.76883 * 7 6 5 9 9 C 1.38286 * 120.07656 * 0.51387 * 8 7 6 10 10 C 1.38287 * 120.14999 * 359.74195 * 9 8 7 11 11 C 1.38115 * 120.07234 * 0.02562 * 10 9 8 12 12 C 1.46957 * 110.87534 * 59.32228 * 5 4 2 13 13 H 1.09000 * 109.49167 * 60.64756 * 12 5 4 14 14 C 1.50709 * 109.48600 * 180.71309 * 12 5 4 15 15 H 1.08001 * 119.99713 * 359.88798 * 14 12 5 16 16 C 1.37873 * 119.99930 * 179.88818 * 14 12 5 17 17 N 1.31509 * 120.00078 * 0.02562 * 16 14 12 18 18 Si 1.86803 * 120.00000 * 179.97438 * 16 14 12 19 19 H 1.48489 * 109.47137 * 89.99944 * 18 16 14 20 20 H 1.48499 * 109.47153 * 210.00295 * 18 16 14 21 21 H 1.48499 * 109.46900 * 329.99930 * 18 16 14 22 22 C 1.53052 * 109.36560 * 300.67549 * 12 5 4 23 23 N 1.46956 * 109.48674 * 239.95160 * 2 1 3 24 24 H 1.09001 * 109.47207 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46987 * 300.05212 * 1 2 3 26 26 H 1.09001 * 109.47236 * 60.04697 * 1 2 3 27 27 H 1.08998 * 109.49023 * 301.59582 * 4 2 1 28 28 H 1.09002 * 109.49032 * 181.53210 * 4 2 1 29 29 H 1.08000 * 120.03751 * 0.02562 * 7 6 5 30 30 H 1.08000 * 119.96119 * 180.25809 * 8 7 6 31 31 H 1.07994 * 119.92654 * 179.76797 * 9 8 7 32 32 H 1.07994 * 119.96527 * 179.97438 * 10 9 8 33 33 H 1.07998 * 120.03844 * 180.02562 * 11 10 9 34 34 H 0.97006 * 120.00317 * 179.97438 * 17 16 14 35 35 H 1.09002 * 109.48786 * 298.44203 * 22 12 5 36 36 H 1.09004 * 109.50488 * 178.38155 * 22 12 5 37 37 H 1.00906 * 111.00054 * 175.48125 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0406 -0.7227 1.2487 5 7 1.5809 -2.1183 1.2263 6 6 1.9678 -2.7915 2.3873 7 6 1.0980 -2.8729 3.4673 8 6 1.4819 -3.5434 4.6120 9 6 2.7346 -4.1243 4.6878 10 6 3.6049 -4.0406 3.6164 11 6 3.2255 -3.3756 2.4669 12 6 2.0712 -2.8120 0.0271 13 1 3.1612 -2.8120 0.0271 14 6 1.5679 -4.2325 0.0270 15 1 0.9476 -4.5857 0.8374 16 6 1.8995 -5.0813 -1.0077 17 7 2.6553 -4.6513 -1.9943 18 14 1.2763 -6.8423 -1.0075 19 1 -0.0326 -6.9042 -1.7059 20 1 2.2534 -7.7132 -1.7089 21 1 1.1129 -7.3093 0.3926 22 6 1.5605 -2.0893 -1.2217 23 7 2.0202 -0.6937 -1.1992 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5147 0.8895 26 1 -0.3634 0.5131 -0.8904 27 1 1.6545 -0.2269 2.1392 28 1 3.1303 -0.6989 1.2626 29 1 0.1211 -2.4159 3.4104 30 1 0.8046 -3.6107 5.4506 31 1 3.0337 -4.6448 5.5855 32 1 4.5826 -4.4949 3.6790 33 1 3.9055 -3.3110 1.6303 34 1 2.8890 -5.2486 -2.7222 35 1 0.4708 -2.1130 -1.2355 36 1 1.9464 -2.5850 -2.1125 37 1 3.0262 -0.6433 -1.2603 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251778122.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:59 Heat of formation + Delta-G solvation = 42.191264 kcal Electronic energy + Delta-G solvation = -18615.179900 eV Core-core repulsion = 15971.329582 eV Total energy + Delta-G solvation = -2643.850318 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.65757 -37.59923 -33.98547 -33.05643 -30.52711 -30.19417 -28.67904 -27.34674 -24.86696 -23.81636 -22.34692 -21.22676 -20.51222 -18.39105 -16.98820 -16.30821 -15.59660 -14.85114 -14.74154 -14.15585 -13.95898 -13.74694 -13.55992 -13.05922 -12.76376 -12.56899 -12.03725 -11.87507 -11.46084 -11.21819 -11.00599 -10.92430 -10.75766 -10.65460 -10.47448 -10.24003 -10.10592 -9.80624 -9.32457 -8.63466 -8.33668 -8.18368 -7.54581 -7.19882 -6.10726 -4.12701 1.98283 2.01437 3.27879 3.34427 3.39441 4.34256 4.38833 4.69881 5.08365 5.24413 5.44826 5.49568 5.57368 5.62051 5.68692 5.78845 6.00721 6.05097 6.14847 6.21192 6.30651 6.37430 6.57172 6.61884 6.70942 6.81908 6.91521 6.94833 6.99902 7.08769 7.30889 7.44657 7.61574 7.72594 7.87015 8.01720 8.26328 8.29295 8.46075 8.92992 9.51506 10.96451 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.014324 B = 0.012780 C = 0.007767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1954.359666 B = 2190.477806 C = 3604.186316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.087 3.913 3 H 0.070 0.930 4 C 0.031 3.969 5 N -0.498 5.498 6 C 0.140 3.860 7 C -0.120 4.120 8 C -0.121 4.121 9 C -0.147 4.147 10 C -0.115 4.115 11 C -0.131 4.131 12 C 0.188 3.812 13 H 0.004 0.996 14 C -0.498 4.498 15 H 0.062 0.938 16 C 0.063 3.937 17 N -0.894 5.894 18 Si 0.896 3.104 19 H -0.279 1.279 20 H -0.287 1.287 21 H -0.274 1.274 22 C 0.062 3.938 23 N -0.692 5.692 24 H 0.074 0.926 25 H 0.045 0.955 26 H 0.049 0.951 27 H 0.064 0.936 28 H 0.024 0.976 29 H 0.118 0.882 30 H 0.113 0.887 31 H 0.110 0.890 32 H 0.111 0.889 33 H 0.120 0.880 34 H 0.262 0.738 35 H 0.061 0.939 36 H 0.108 0.892 37 H 0.329 0.671 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.160 5.525 7.799 9.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.024 4.024 3 H 0.088 0.912 4 C -0.097 4.097 5 N -0.218 5.218 6 C 0.045 3.955 7 C -0.139 4.139 8 C -0.139 4.139 9 C -0.165 4.165 10 C -0.134 4.134 11 C -0.152 4.152 12 C 0.081 3.919 13 H 0.021 0.979 14 C -0.537 4.537 15 H 0.080 0.920 16 C -0.139 4.139 17 N -0.533 5.533 18 Si 0.724 3.276 19 H -0.205 1.205 20 H -0.213 1.213 21 H -0.199 1.199 22 C -0.067 4.067 23 N -0.320 5.320 24 H 0.093 0.907 25 H 0.064 0.936 26 H 0.068 0.932 27 H 0.083 0.917 28 H 0.042 0.958 29 H 0.136 0.864 30 H 0.131 0.869 31 H 0.128 0.872 32 H 0.129 0.871 33 H 0.138 0.862 34 H 0.072 0.928 35 H 0.080 0.920 36 H 0.126 0.874 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -1.126 5.730 7.136 9.221 hybrid contribution 1.176 -1.602 0.667 2.096 sum 0.050 4.128 7.803 8.827 Atomic orbital electron populations 1.21701 0.94337 1.03248 0.99856 1.21556 0.96536 0.96239 0.88104 0.91212 1.22817 0.96865 0.90166 0.99844 1.59818 1.59201 1.00789 1.02016 1.18796 0.91010 0.95219 0.90496 1.20922 0.99103 1.00883 0.93003 1.20891 0.96342 0.99013 0.97686 1.20916 0.94894 1.02145 0.98586 1.20931 0.99294 0.99478 0.93674 1.21644 0.96757 0.99309 0.97467 1.20051 0.93526 0.93334 0.84946 0.97850 1.20995 1.31436 0.94166 1.07134 0.92015 1.24875 0.94943 0.98682 0.95370 1.69836 1.36840 1.35924 1.10674 0.86508 0.78601 0.84298 0.78191 1.20542 1.21281 1.19915 1.22390 0.99905 0.83652 1.00720 1.60977 1.15434 1.18012 1.37622 0.90723 0.93605 0.93236 0.91714 0.95811 0.86378 0.86897 0.87181 0.87101 0.86222 0.92769 0.92048 0.87372 0.85532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.23 8.84 37.16 0.33 -1.90 16 2 C 0.09 1.49 3.69 -67.66 -0.25 1.24 16 3 H 0.07 1.05 8.14 -51.92 -0.42 0.63 16 4 C 0.03 0.56 4.98 -3.77 -0.02 0.55 16 5 N -0.50 -10.44 3.84 -164.73 -0.63 -11.07 16 6 C 0.14 2.87 3.64 -83.79 -0.31 2.56 16 7 C -0.12 -2.19 9.97 -39.38 -0.39 -2.59 16 8 C -0.12 -1.95 10.04 -39.61 -0.40 -2.35 16 9 C -0.15 -2.36 10.04 -39.55 -0.40 -2.76 16 10 C -0.11 -2.03 10.04 -39.61 -0.40 -2.43 16 11 C -0.13 -2.68 8.68 -39.38 -0.34 -3.02 16 12 C 0.19 4.50 1.47 -68.80 -0.10 4.40 16 13 H 0.00 0.11 6.52 -51.93 -0.34 -0.23 16 14 C -0.50 -13.29 7.62 -34.44 -0.26 -13.55 16 15 H 0.06 1.73 7.28 -52.49 -0.38 1.35 16 16 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 17 N -0.89 -24.48 11.34 55.43 0.63 -23.85 16 18 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 19 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 20 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 22 C 0.06 1.43 5.37 -3.77 -0.02 1.41 16 23 N -0.69 -13.50 6.70 -106.59 -0.71 -14.21 16 24 H 0.07 1.44 5.94 -51.93 -0.31 1.13 16 25 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 27 H 0.06 1.07 8.13 -51.93 -0.42 0.65 16 28 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.12 2.03 8.06 -52.49 -0.42 1.61 16 30 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 31 H 0.11 1.45 8.06 -52.49 -0.42 1.02 16 32 H 0.11 1.71 8.06 -52.49 -0.42 1.28 16 33 H 0.12 2.61 6.38 -52.49 -0.34 2.28 16 34 H 0.26 6.93 8.31 -40.82 -0.34 6.60 16 35 H 0.06 1.48 6.34 -51.93 -0.33 1.15 16 36 H 0.11 2.79 6.12 -51.93 -0.32 2.48 16 37 H 0.33 6.23 8.89 -39.29 -0.35 5.88 16 LS Contribution 291.12 15.07 4.39 4.39 Total: -1.00 -27.25 291.12 -9.30 -36.55 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: -5.30 Total: 8.73 kcal Atomic # 6 Polarization: -14.19 SS G_CDS: -2.65 Total: -16.84 kcal Atomic # 7 Polarization: -48.42 SS G_CDS: -0.72 Total: -49.14 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -27.25 -9.30 -36.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251778122.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.740 kcal (2) G-P(sol) polarization free energy of solvation -27.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds