Wall clock time and date at job start Mon Mar 30 2020 04:05:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.50442 * 2 1 4 4 C 1.53041 * 109.48998 * 120.05966 * 2 1 3 5 5 N 1.46957 * 109.36654 * 61.56378 * 4 2 1 6 6 C 1.39673 * 111.00201 * 183.18601 * 5 4 2 7 7 C 1.38915 * 120.07162 * 94.26554 * 6 5 4 8 8 C 1.38108 * 119.92220 * 179.76883 * 7 6 5 9 9 C 1.38286 * 120.07656 * 0.51387 * 8 7 6 10 10 C 1.38287 * 120.14999 * 359.74195 * 9 8 7 11 11 C 1.38115 * 120.07234 * 0.02562 * 10 9 8 12 12 C 1.46957 * 110.87534 * 59.32228 * 5 4 2 13 13 H 1.09000 * 109.49167 * 60.64756 * 12 5 4 14 14 C 1.50709 * 109.48600 * 180.71309 * 12 5 4 15 15 H 1.08001 * 119.99713 * 359.88798 * 14 12 5 16 16 C 1.37873 * 119.99930 * 179.88818 * 14 12 5 17 17 N 1.31509 * 120.00078 * 0.02562 * 16 14 12 18 18 Si 1.86803 * 120.00000 * 179.97438 * 16 14 12 19 19 H 1.48489 * 109.47137 * 89.99944 * 18 16 14 20 20 H 1.48499 * 109.47153 * 210.00295 * 18 16 14 21 21 H 1.48499 * 109.46900 * 329.99930 * 18 16 14 22 22 C 1.53052 * 109.36560 * 300.67549 * 12 5 4 23 23 N 1.46956 * 109.48674 * 239.95160 * 2 1 3 24 24 H 1.09001 * 109.47207 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46987 * 300.05212 * 1 2 3 26 26 H 1.09001 * 109.47236 * 60.04697 * 1 2 3 27 27 H 1.08998 * 109.49023 * 301.59582 * 4 2 1 28 28 H 1.09002 * 109.49032 * 181.53210 * 4 2 1 29 29 H 1.08000 * 120.03751 * 0.02562 * 7 6 5 30 30 H 1.08000 * 119.96119 * 180.25809 * 8 7 6 31 31 H 1.07994 * 119.92654 * 179.76797 * 9 8 7 32 32 H 1.07994 * 119.96527 * 179.97438 * 10 9 8 33 33 H 1.07998 * 120.03844 * 180.02562 * 11 10 9 34 34 H 0.97006 * 120.00317 * 179.97438 * 17 16 14 35 35 H 1.09002 * 109.48786 * 298.44203 * 22 12 5 36 36 H 1.09004 * 109.50488 * 178.38155 * 22 12 5 37 37 H 1.00906 * 111.00054 * 175.48125 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0406 -0.7227 1.2487 5 7 1.5809 -2.1183 1.2263 6 6 1.9678 -2.7915 2.3873 7 6 1.0980 -2.8729 3.4673 8 6 1.4819 -3.5434 4.6120 9 6 2.7346 -4.1243 4.6878 10 6 3.6049 -4.0406 3.6164 11 6 3.2255 -3.3756 2.4669 12 6 2.0712 -2.8120 0.0271 13 1 3.1612 -2.8120 0.0271 14 6 1.5679 -4.2325 0.0270 15 1 0.9476 -4.5857 0.8374 16 6 1.8995 -5.0813 -1.0077 17 7 2.6553 -4.6513 -1.9943 18 14 1.2763 -6.8423 -1.0075 19 1 -0.0326 -6.9042 -1.7059 20 1 2.2534 -7.7132 -1.7089 21 1 1.1129 -7.3093 0.3926 22 6 1.5605 -2.0893 -1.2217 23 7 2.0202 -0.6937 -1.1992 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5147 0.8895 26 1 -0.3634 0.5131 -0.8904 27 1 1.6545 -0.2269 2.1392 28 1 3.1303 -0.6989 1.2626 29 1 0.1211 -2.4159 3.4104 30 1 0.8046 -3.6107 5.4506 31 1 3.0337 -4.6448 5.5855 32 1 4.5826 -4.4949 3.6790 33 1 3.9055 -3.3110 1.6303 34 1 2.8890 -5.2486 -2.7222 35 1 0.4708 -2.1130 -1.2355 36 1 1.9464 -2.5850 -2.1125 37 1 3.0262 -0.6433 -1.2603 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251778122.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:59 Heat of formation + Delta-G solvation = 25.016359 kcal Electronic energy + Delta-G solvation = -18615.924660 eV Core-core repulsion = 15971.329582 eV Total energy + Delta-G solvation = -2644.595078 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.21365 -39.06523 -35.59457 -34.93356 -32.21005 -31.64001 -30.17063 -28.97418 -26.65521 -25.45549 -23.91784 -22.78017 -22.01081 -19.99531 -18.65697 -18.14662 -17.09594 -16.67390 -16.23548 -15.69926 -15.57477 -15.36725 -15.08074 -14.74179 -14.19936 -14.03027 -13.80947 -13.33892 -13.06418 -12.86442 -12.64869 -12.63513 -12.33984 -12.15395 -12.12594 -11.92152 -11.82642 -11.57196 -11.18476 -10.63812 -9.78258 -9.70566 -9.19129 -8.81037 -8.16531 -6.24403 0.58522 0.60900 1.36918 1.38332 1.47881 2.37958 2.97756 3.09935 3.14870 3.55290 4.10076 4.15218 4.19586 4.21562 4.33578 4.38710 4.56507 4.67536 4.69854 4.77834 4.85300 4.91901 5.00780 5.03253 5.19447 5.24466 5.25802 5.49026 5.57808 5.64546 5.67836 5.70953 5.83151 6.01538 6.13602 6.26285 6.52882 6.59798 6.69182 6.91030 7.42123 8.89140 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.014324 B = 0.012780 C = 0.007767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1954.359666 B = 2190.477806 C = 3604.186316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.085 3.915 3 H 0.103 0.897 4 C 0.032 3.968 5 N -0.499 5.499 6 C 0.111 3.889 7 C -0.130 4.130 8 C -0.112 4.112 9 C -0.140 4.140 10 C -0.121 4.121 11 C -0.159 4.159 12 C 0.202 3.798 13 H -0.031 1.031 14 C -0.506 4.506 15 H 0.044 0.956 16 C 0.020 3.980 17 N -0.915 5.915 18 Si 0.951 3.049 19 H -0.274 1.274 20 H -0.282 1.282 21 H -0.276 1.276 22 C 0.079 3.921 23 N -0.688 5.688 24 H 0.043 0.957 25 H 0.071 0.929 26 H 0.056 0.944 27 H 0.086 0.914 28 H 0.015 0.985 29 H 0.127 0.873 30 H 0.152 0.848 31 H 0.149 0.851 32 H 0.129 0.871 33 H 0.088 0.912 34 H 0.263 0.737 35 H 0.048 0.952 36 H 0.077 0.923 37 H 0.331 0.669 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.967 5.803 9.940 11.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.025 4.025 3 H 0.121 0.879 4 C -0.095 4.095 5 N -0.219 5.219 6 C 0.016 3.984 7 C -0.149 4.149 8 C -0.130 4.130 9 C -0.158 4.158 10 C -0.140 4.140 11 C -0.179 4.179 12 C 0.094 3.906 13 H -0.013 1.013 14 C -0.545 4.545 15 H 0.063 0.937 16 C -0.179 4.179 17 N -0.554 5.554 18 Si 0.777 3.223 19 H -0.199 1.199 20 H -0.207 1.207 21 H -0.202 1.202 22 C -0.051 4.051 23 N -0.316 5.316 24 H 0.062 0.938 25 H 0.090 0.910 26 H 0.075 0.925 27 H 0.105 0.895 28 H 0.033 0.967 29 H 0.145 0.855 30 H 0.169 0.831 31 H 0.166 0.834 32 H 0.147 0.853 33 H 0.106 0.894 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.096 0.904 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -1.934 6.025 9.289 11.240 hybrid contribution 1.452 -1.660 0.104 2.208 sum -0.482 4.365 9.393 10.369 Atomic orbital electron populations 1.21633 0.93628 1.01671 1.01505 1.21765 0.97088 0.97246 0.86444 0.87931 1.22902 0.96456 0.88945 1.01242 1.59802 1.58975 1.01863 1.01302 1.19035 0.91743 0.96486 0.91106 1.21126 0.99104 1.01528 0.93181 1.21344 0.96888 0.97035 0.97762 1.21359 0.94289 1.01141 0.99052 1.21215 1.00635 0.98861 0.93265 1.21537 0.96795 1.01680 0.97925 1.19721 0.91214 0.92813 0.86861 1.01345 1.21114 1.31088 0.95823 1.06518 0.93744 1.25535 0.95243 1.01954 0.95186 1.69952 1.37592 1.36869 1.11017 0.85653 0.78310 0.80420 0.77889 1.19933 1.20740 1.20150 1.21964 0.98674 0.85470 0.99011 1.60936 1.15650 1.15770 1.39281 0.93825 0.91009 0.92525 0.89545 0.96699 0.85485 0.83064 0.83360 0.85330 0.89393 0.92793 0.93323 0.90448 0.85272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.03 8.84 71.98 0.64 -3.39 16 2 C 0.08 2.81 3.69 44.92 0.17 2.98 16 3 H 0.10 2.80 8.14 -2.38 -0.02 2.78 16 4 C 0.03 1.15 4.98 86.31 0.43 1.58 16 5 N -0.50 -21.31 3.84 -675.09 -2.59 -23.90 16 6 C 0.11 4.59 3.64 38.21 0.14 4.72 16 7 C -0.13 -4.56 9.97 22.40 0.22 -4.34 16 8 C -0.11 -3.24 10.04 22.25 0.22 -3.02 16 9 C -0.14 -4.04 10.04 22.29 0.22 -3.82 16 10 C -0.12 -4.15 10.04 22.25 0.22 -3.93 16 11 C -0.16 -6.64 8.68 22.40 0.19 -6.44 16 12 C 0.20 10.07 1.47 44.18 0.06 10.14 16 13 H -0.03 -1.73 6.52 -2.39 -0.02 -1.74 16 14 C -0.51 -27.97 7.62 25.60 0.19 -27.78 16 15 H 0.04 2.56 7.28 -2.91 -0.02 2.54 16 16 C 0.02 1.11 5.30 84.65 0.45 1.56 16 17 N -0.91 -51.84 11.34 21.44 0.24 -51.59 16 18 Si 0.95 44.44 29.54 68.60 2.03 46.46 16 19 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 20 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 21 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 22 C 0.08 3.77 5.37 86.31 0.46 4.24 16 23 N -0.69 -27.08 6.70 -491.13 -3.29 -30.37 16 24 H 0.04 1.66 5.94 -2.39 -0.01 1.65 16 25 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 26 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.09 2.71 8.13 -2.39 -0.02 2.69 16 28 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.13 4.13 8.06 -2.91 -0.02 4.10 16 30 H 0.15 3.21 8.06 -2.91 -0.02 3.19 16 31 H 0.15 3.15 8.06 -2.91 -0.02 3.13 16 32 H 0.13 3.81 8.06 -2.91 -0.02 3.79 16 33 H 0.09 4.14 6.38 -2.91 -0.02 4.12 16 34 H 0.26 14.25 8.31 -92.70 -0.77 13.48 16 35 H 0.05 2.43 6.34 -2.39 -0.02 2.41 16 36 H 0.08 4.19 6.12 -2.39 -0.01 4.18 16 37 H 0.33 12.78 8.89 -89.69 -0.80 11.98 16 Total: -1.00 -60.90 291.12 0.29 -60.62 By element: Atomic # 1 Polarization: 26.02 SS G_CDS: 0.26 Total: 26.28 kcal Atomic # 6 Polarization: -31.13 SS G_CDS: 3.63 Total: -27.50 kcal Atomic # 7 Polarization: -100.22 SS G_CDS: -5.64 Total: -105.86 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.46 kcal Total: -60.90 0.29 -60.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251778122.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.633 kcal (2) G-P(sol) polarization free energy of solvation -60.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds