Wall clock time and date at job start Mon Mar 30 2020 04:06:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.48891 * 2 1 4 4 C 1.53046 * 109.49203 * 239.93591 * 2 1 3 5 5 N 1.46954 * 109.36616 * 181.63537 * 4 2 1 6 6 C 1.39673 * 111.00115 * 183.18667 * 5 4 2 7 7 C 1.38913 * 120.07467 * 94.26617 * 6 5 4 8 8 C 1.38105 * 119.92556 * 179.76825 * 7 6 5 9 9 C 1.38292 * 120.07247 * 0.50472 * 8 7 6 10 10 C 1.38285 * 120.14917 * 359.74883 * 9 8 7 11 11 C 1.38106 * 120.07448 * 359.97438 * 10 9 8 12 12 C 1.46955 * 110.88588 * 59.31572 * 5 4 2 13 13 H 1.08996 * 109.48766 * 60.64483 * 12 5 4 14 14 C 1.50699 * 109.49430 * 180.71834 * 12 5 4 15 15 H 1.07997 * 119.99635 * 359.88545 * 14 12 5 16 16 C 1.37871 * 119.99956 * 179.89482 * 14 12 5 17 17 N 1.31515 * 120.00292 * 359.97438 * 16 14 12 18 18 Si 1.86805 * 119.99910 * 179.97438 * 16 14 12 19 19 H 1.48510 * 109.46817 * 59.99735 * 18 16 14 20 20 H 1.48500 * 109.47382 * 179.97438 * 18 16 14 21 21 H 1.48493 * 109.47386 * 299.99923 * 18 16 14 22 22 C 1.53056 * 109.36475 * 300.68508 * 12 5 4 23 23 N 1.46960 * 109.36527 * 58.39640 * 22 12 5 24 24 H 1.08991 * 109.47733 * 299.95623 * 1 2 3 25 25 H 1.09001 * 109.47285 * 179.97438 * 1 2 3 26 26 H 1.09010 * 109.46776 * 59.96011 * 1 2 3 27 27 H 1.09000 * 109.48679 * 301.59459 * 4 2 1 28 28 H 1.09001 * 109.49464 * 61.66296 * 4 2 1 29 29 H 1.07997 * 120.03753 * 0.02562 * 7 6 5 30 30 H 1.08000 * 119.96463 * 180.25023 * 8 7 6 31 31 H 1.08000 * 119.92390 * 179.76324 * 9 8 7 32 32 H 1.07997 * 119.96008 * 179.97438 * 10 9 8 33 33 H 1.08003 * 120.03490 * 179.97438 * 11 10 9 34 34 H 0.97006 * 120.00050 * 180.02562 * 17 16 14 35 35 H 1.09000 * 109.48682 * 298.43410 * 22 12 5 36 36 H 1.08997 * 109.48976 * 178.36557 * 22 12 5 37 37 H 1.00902 * 110.99737 * 64.54609 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0407 -0.7228 -1.2486 5 7 3.5097 -0.7555 -1.2262 6 6 4.0150 -1.3451 -2.3871 7 6 4.3823 -0.5526 -3.4673 8 6 4.8861 -1.1385 -4.6119 9 6 5.0154 -2.5133 -4.6874 10 6 4.6458 -3.3055 -3.6159 11 6 4.1466 -2.7257 -2.4662 12 6 4.0000 -1.4490 -0.0270 13 1 3.6360 -2.4764 -0.0267 14 6 5.5070 -1.4490 -0.0268 15 1 6.0469 -0.9823 -0.8373 16 6 6.1962 -2.0448 1.0079 17 7 5.5386 -2.6128 1.9951 18 14 8.0643 -2.0454 1.0078 19 1 8.5596 -0.6453 1.0058 20 1 8.5593 -2.7434 2.2214 21 1 8.5590 -2.7471 -0.2038 22 6 3.4893 -0.7262 1.2218 23 7 2.0202 -0.6936 1.1993 24 1 -0.3634 0.5131 0.8903 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5145 -0.8897 27 1 1.6545 -1.7420 -1.2623 28 1 1.7023 -0.1934 -2.1393 29 1 4.2778 0.5208 -3.4105 30 1 5.1756 -0.5226 -5.4506 31 1 5.4061 -2.9692 -5.5851 32 1 4.7477 -4.3789 -3.6783 33 1 3.8578 -3.3451 -1.6299 34 1 6.0236 -3.0318 2.7234 35 1 3.8754 0.2930 1.2354 36 1 3.8277 -1.2557 2.1124 37 1 1.6369 -1.6249 1.2605 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251778124.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:01 Heat of formation + Delta-G solvation = 38.034575 kcal Electronic energy + Delta-G solvation = -18433.121341 eV Core-core repulsion = 15789.090775 eV Total energy + Delta-G solvation = -2644.030566 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.59130 -37.52480 -34.13305 -33.07533 -30.84999 -30.30275 -28.71054 -27.30453 -24.46846 -23.76833 -22.25058 -21.18765 -20.51068 -19.30967 -16.87159 -16.25641 -15.19879 -14.88062 -14.59693 -14.41990 -14.03422 -13.80568 -13.58040 -13.06689 -12.73965 -12.57098 -12.06889 -11.99626 -11.61938 -11.40988 -11.02344 -10.94202 -10.78753 -10.62278 -10.56274 -10.36335 -10.11683 -9.86811 -9.37676 -8.63030 -8.34093 -8.19211 -7.55231 -7.22610 -6.10741 -4.12742 1.97827 2.01102 3.29997 3.33660 3.37927 4.33710 4.38468 4.66994 5.03124 5.23646 5.39904 5.45676 5.52841 5.64894 5.67889 5.75222 5.88508 5.99069 6.05405 6.12496 6.15765 6.31356 6.45363 6.54010 6.61994 6.71619 6.81567 6.93905 6.99187 7.08467 7.29984 7.44238 7.60119 7.71688 7.85451 8.01025 8.25393 8.28981 8.45767 8.92485 9.51328 10.96508 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.014107 B = 0.012272 C = 0.007257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.406735 B = 2281.108486 C = 3857.521144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.085 3.915 3 H 0.082 0.918 4 C 0.033 3.967 5 N -0.503 5.503 6 C 0.140 3.860 7 C -0.120 4.120 8 C -0.120 4.120 9 C -0.147 4.147 10 C -0.115 4.115 11 C -0.131 4.131 12 C 0.188 3.812 13 H 0.005 0.995 14 C -0.499 4.499 15 H 0.061 0.939 16 C 0.063 3.937 17 N -0.894 5.894 18 Si 0.897 3.103 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.278 1.278 22 C 0.064 3.936 23 N -0.691 5.691 24 H 0.061 0.939 25 H 0.049 0.951 26 H 0.054 0.946 27 H 0.025 0.975 28 H 0.064 0.936 29 H 0.118 0.882 30 H 0.113 0.887 31 H 0.110 0.890 32 H 0.111 0.889 33 H 0.120 0.880 34 H 0.263 0.737 35 H 0.056 0.944 36 H 0.111 0.889 37 H 0.327 0.673 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.994 1.487 -7.769 9.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.026 4.026 3 H 0.100 0.900 4 C -0.095 4.095 5 N -0.223 5.223 6 C 0.045 3.955 7 C -0.140 4.140 8 C -0.139 4.139 9 C -0.165 4.165 10 C -0.134 4.134 11 C -0.151 4.151 12 C 0.082 3.918 13 H 0.022 0.978 14 C -0.538 4.538 15 H 0.079 0.921 16 C -0.138 4.138 17 N -0.533 5.533 18 Si 0.725 3.275 19 H -0.201 1.201 20 H -0.213 1.213 21 H -0.203 1.203 22 C -0.064 4.064 23 N -0.319 5.319 24 H 0.081 0.919 25 H 0.068 0.932 26 H 0.073 0.927 27 H 0.043 0.957 28 H 0.082 0.918 29 H 0.136 0.864 30 H 0.131 0.869 31 H 0.128 0.872 32 H 0.129 0.871 33 H 0.138 0.862 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.128 0.872 37 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -5.860 2.466 -7.101 9.531 hybrid contribution 1.172 -1.595 -0.684 2.094 sum -4.688 0.871 -7.785 9.129 Atomic orbital electron populations 1.21774 0.95153 1.01463 1.01521 1.21583 0.93791 0.99058 0.88159 0.90033 1.22823 0.88149 0.98774 0.99735 1.59823 1.05940 1.54439 1.02135 1.18781 0.95697 0.90571 0.90445 1.20927 1.00543 0.99473 0.93020 1.20892 1.00595 0.94754 0.97671 1.20921 1.03029 0.93981 0.98591 1.20932 0.99622 0.99163 0.93652 1.21638 1.00387 0.95639 0.97480 1.20048 0.95858 0.91035 0.84898 0.97773 1.20954 0.89798 1.35891 1.07180 0.92064 1.24875 0.98643 0.94997 0.95334 1.69826 1.35436 1.37422 1.10621 0.86558 0.85320 0.78344 0.77285 1.20129 1.21265 1.20318 1.22353 0.82703 1.00528 1.00848 1.61036 1.11026 1.22384 1.37493 0.91945 0.93210 0.92736 0.95697 0.91764 0.86368 0.86863 0.87150 0.87071 0.86213 0.92688 0.92512 0.87153 0.85632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 9.45 37.16 0.35 -1.56 16 2 C 0.09 1.47 3.20 -67.66 -0.22 1.25 16 3 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 4 C 0.03 0.61 4.83 -3.77 -0.02 0.59 16 5 N -0.50 -10.80 4.52 -164.74 -0.74 -11.55 16 6 C 0.14 2.91 3.64 -83.79 -0.31 2.60 16 7 C -0.12 -2.22 9.97 -39.38 -0.39 -2.62 16 8 C -0.12 -1.95 10.04 -39.61 -0.40 -2.35 16 9 C -0.15 -2.36 10.04 -39.54 -0.40 -2.76 16 10 C -0.11 -2.04 10.04 -39.61 -0.40 -2.43 16 11 C -0.13 -2.69 8.67 -39.38 -0.34 -3.03 16 12 C 0.19 4.56 1.47 -68.81 -0.10 4.46 16 13 H 0.00 0.13 6.52 -51.93 -0.34 -0.21 16 14 C -0.50 -13.44 7.61 -34.44 -0.26 -13.70 16 15 H 0.06 1.73 7.28 -52.49 -0.38 1.35 16 16 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 17 N -0.89 -24.57 11.34 55.43 0.63 -23.94 16 18 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 C 0.06 1.51 5.76 -3.76 -0.02 1.49 16 23 N -0.69 -13.55 6.56 -106.58 -0.70 -14.25 16 24 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.05 0.64 8.14 -51.92 -0.42 0.22 16 27 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.06 1.07 8.13 -51.93 -0.42 0.65 16 29 H 0.12 2.05 8.06 -52.49 -0.42 1.63 16 30 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 31 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 32 H 0.11 1.72 8.06 -52.49 -0.42 1.29 16 33 H 0.12 2.63 6.39 -52.48 -0.34 2.30 16 34 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 35 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 36 H 0.11 2.86 6.12 -51.93 -0.32 2.54 16 37 H 0.33 6.27 8.80 -39.29 -0.35 5.92 16 LS Contribution 295.92 15.07 4.46 4.46 Total: -1.00 -27.52 295.92 -9.48 -37.00 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: -5.50 Total: 8.33 kcal Atomic # 6 Polarization: -13.85 SS G_CDS: -2.59 Total: -16.45 kcal Atomic # 7 Polarization: -48.93 SS G_CDS: -0.82 Total: -49.74 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -27.52 -9.48 -37.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251778124.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.035 kcal (2) G-P(sol) polarization free energy of solvation -27.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds