Wall clock time and date at job start Mon Mar 30 2020 04:06:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.48891 * 2 1 4 4 C 1.53046 * 109.49203 * 239.93591 * 2 1 3 5 5 N 1.46954 * 109.36616 * 181.63537 * 4 2 1 6 6 C 1.39673 * 111.00115 * 183.18667 * 5 4 2 7 7 C 1.38913 * 120.07467 * 94.26617 * 6 5 4 8 8 C 1.38105 * 119.92556 * 179.76825 * 7 6 5 9 9 C 1.38292 * 120.07247 * 0.50472 * 8 7 6 10 10 C 1.38285 * 120.14917 * 359.74883 * 9 8 7 11 11 C 1.38106 * 120.07448 * 359.97438 * 10 9 8 12 12 C 1.46955 * 110.88588 * 59.31572 * 5 4 2 13 13 H 1.08996 * 109.48766 * 60.64483 * 12 5 4 14 14 C 1.50699 * 109.49430 * 180.71834 * 12 5 4 15 15 H 1.07997 * 119.99635 * 359.88545 * 14 12 5 16 16 C 1.37871 * 119.99956 * 179.89482 * 14 12 5 17 17 N 1.31515 * 120.00292 * 359.97438 * 16 14 12 18 18 Si 1.86805 * 119.99910 * 179.97438 * 16 14 12 19 19 H 1.48510 * 109.46817 * 59.99735 * 18 16 14 20 20 H 1.48500 * 109.47382 * 179.97438 * 18 16 14 21 21 H 1.48493 * 109.47386 * 299.99923 * 18 16 14 22 22 C 1.53056 * 109.36475 * 300.68508 * 12 5 4 23 23 N 1.46960 * 109.36527 * 58.39640 * 22 12 5 24 24 H 1.08991 * 109.47733 * 299.95623 * 1 2 3 25 25 H 1.09001 * 109.47285 * 179.97438 * 1 2 3 26 26 H 1.09010 * 109.46776 * 59.96011 * 1 2 3 27 27 H 1.09000 * 109.48679 * 301.59459 * 4 2 1 28 28 H 1.09001 * 109.49464 * 61.66296 * 4 2 1 29 29 H 1.07997 * 120.03753 * 0.02562 * 7 6 5 30 30 H 1.08000 * 119.96463 * 180.25023 * 8 7 6 31 31 H 1.08000 * 119.92390 * 179.76324 * 9 8 7 32 32 H 1.07997 * 119.96008 * 179.97438 * 10 9 8 33 33 H 1.08003 * 120.03490 * 179.97438 * 11 10 9 34 34 H 0.97006 * 120.00050 * 180.02562 * 17 16 14 35 35 H 1.09000 * 109.48682 * 298.43410 * 22 12 5 36 36 H 1.08997 * 109.48976 * 178.36557 * 22 12 5 37 37 H 1.00902 * 110.99737 * 64.54609 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0407 -0.7228 -1.2486 5 7 3.5097 -0.7555 -1.2262 6 6 4.0150 -1.3451 -2.3871 7 6 4.3823 -0.5526 -3.4673 8 6 4.8861 -1.1385 -4.6119 9 6 5.0154 -2.5133 -4.6874 10 6 4.6458 -3.3055 -3.6159 11 6 4.1466 -2.7257 -2.4662 12 6 4.0000 -1.4490 -0.0270 13 1 3.6360 -2.4764 -0.0267 14 6 5.5070 -1.4490 -0.0268 15 1 6.0469 -0.9823 -0.8373 16 6 6.1962 -2.0448 1.0079 17 7 5.5386 -2.6128 1.9951 18 14 8.0643 -2.0454 1.0078 19 1 8.5596 -0.6453 1.0058 20 1 8.5593 -2.7434 2.2214 21 1 8.5590 -2.7471 -0.2038 22 6 3.4893 -0.7262 1.2218 23 7 2.0202 -0.6936 1.1993 24 1 -0.3634 0.5131 0.8903 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5145 -0.8897 27 1 1.6545 -1.7420 -1.2623 28 1 1.7023 -0.1934 -2.1393 29 1 4.2778 0.5208 -3.4105 30 1 5.1756 -0.5226 -5.4506 31 1 5.4061 -2.9692 -5.5851 32 1 4.7477 -4.3789 -3.6783 33 1 3.8578 -3.3451 -1.6299 34 1 6.0236 -3.0318 2.7234 35 1 3.8754 0.2930 1.2354 36 1 3.8277 -1.2557 2.1124 37 1 1.6369 -1.6249 1.2605 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251778124.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:01 Heat of formation + Delta-G solvation = 20.373541 kcal Electronic energy + Delta-G solvation = -18433.887181 eV Core-core repulsion = 15789.090775 eV Total energy + Delta-G solvation = -2644.796405 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.15936 -39.00633 -35.72742 -34.95145 -32.55667 -31.70494 -30.18985 -28.98850 -26.07701 -25.55556 -23.77175 -22.74222 -21.96141 -20.98456 -18.64637 -17.97403 -16.93391 -16.46383 -16.15029 -15.92982 -15.72486 -15.38091 -15.09329 -14.71067 -14.17136 -14.11485 -13.73336 -13.42927 -13.03885 -12.83656 -12.75541 -12.70839 -12.43896 -12.19098 -12.06769 -12.01135 -11.85224 -11.66967 -11.29899 -10.64546 -9.81053 -9.72267 -9.21606 -8.85866 -8.17715 -6.25900 0.57070 0.59655 1.37486 1.38317 1.46180 2.37201 2.96215 3.07348 3.12625 3.51291 4.01366 4.15270 4.19674 4.23151 4.33732 4.36405 4.54482 4.63823 4.67273 4.68226 4.82836 4.87258 4.96201 4.99069 5.18329 5.20596 5.24572 5.32422 5.56672 5.61300 5.63412 5.69234 5.81089 5.98900 6.11541 6.22469 6.50424 6.57247 6.66699 6.88641 7.40534 8.87990 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.014107 B = 0.012272 C = 0.007257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.406735 B = 2281.108486 C = 3857.521144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.085 3.915 3 H 0.074 0.926 4 C 0.036 3.964 5 N -0.510 5.510 6 C 0.111 3.889 7 C -0.132 4.132 8 C -0.111 4.111 9 C -0.139 4.139 10 C -0.121 4.121 11 C -0.158 4.158 12 C 0.202 3.798 13 H -0.028 1.028 14 C -0.509 4.509 15 H 0.044 0.956 16 C 0.021 3.979 17 N -0.914 5.914 18 Si 0.952 3.048 19 H -0.273 1.273 20 H -0.280 1.280 21 H -0.277 1.277 22 C 0.079 3.921 23 N -0.686 5.686 24 H 0.069 0.931 25 H 0.054 0.946 26 H 0.078 0.922 27 H 0.017 0.983 28 H 0.085 0.915 29 H 0.126 0.874 30 H 0.153 0.847 31 H 0.150 0.850 32 H 0.130 0.870 33 H 0.088 0.912 34 H 0.264 0.736 35 H 0.039 0.961 36 H 0.082 0.918 37 H 0.330 0.670 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.999 2.088 -9.934 11.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.026 4.026 3 H 0.092 0.908 4 C -0.092 4.092 5 N -0.230 5.230 6 C 0.016 3.984 7 C -0.151 4.151 8 C -0.129 4.129 9 C -0.157 4.157 10 C -0.139 4.139 11 C -0.179 4.179 12 C 0.094 3.906 13 H -0.011 1.011 14 C -0.548 4.548 15 H 0.062 0.938 16 C -0.179 4.179 17 N -0.554 5.554 18 Si 0.778 3.222 19 H -0.198 1.198 20 H -0.205 1.205 21 H -0.203 1.203 22 C -0.051 4.051 23 N -0.314 5.314 24 H 0.088 0.912 25 H 0.073 0.927 26 H 0.097 0.903 27 H 0.035 0.965 28 H 0.103 0.897 29 H 0.144 0.856 30 H 0.170 0.830 31 H 0.168 0.832 32 H 0.148 0.852 33 H 0.106 0.894 34 H 0.073 0.927 35 H 0.058 0.942 36 H 0.101 0.899 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -5.883 3.072 -9.278 11.408 hybrid contribution 1.154 -1.792 -0.112 2.135 sum -4.729 1.279 -9.391 10.592 Atomic orbital electron populations 1.21699 0.91671 1.02324 1.03102 1.21715 0.96442 0.97903 0.86518 0.90778 1.22902 0.86481 0.98713 1.01099 1.59817 1.07757 1.53825 1.01608 1.19011 0.97349 0.91032 0.90988 1.21132 1.00880 0.99820 0.93254 1.21347 0.98524 0.95363 0.97695 1.21371 1.01345 0.93949 0.99068 1.21222 0.98939 1.00548 0.93205 1.21526 1.02787 0.95585 0.97976 1.19719 0.94591 0.89601 0.86691 1.01095 1.21079 0.91299 1.35797 1.06661 0.93751 1.25546 1.02427 0.94807 0.95103 1.69940 1.36667 1.37833 1.10933 0.85698 0.80830 0.78346 0.77333 1.19799 1.20476 1.20306 1.21951 0.85145 0.98628 0.99372 1.60986 1.08542 1.22707 1.39189 0.91232 0.92706 0.90281 0.96467 0.89671 0.85580 0.82973 0.83235 0.85229 0.89370 0.92696 0.94190 0.89942 0.85317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.24 9.45 71.98 0.68 -2.56 16 2 C 0.08 2.88 3.20 44.92 0.14 3.02 16 3 H 0.07 2.65 8.14 -2.38 -0.02 2.63 16 4 C 0.04 1.30 4.83 86.31 0.42 1.72 16 5 N -0.51 -22.42 4.52 -675.11 -3.05 -25.47 16 6 C 0.11 4.65 3.64 38.21 0.14 4.79 16 7 C -0.13 -4.68 9.97 22.40 0.22 -4.45 16 8 C -0.11 -3.22 10.04 22.25 0.22 -3.00 16 9 C -0.14 -4.01 10.04 22.29 0.22 -3.78 16 10 C -0.12 -4.14 10.04 22.25 0.22 -3.92 16 11 C -0.16 -6.66 8.67 22.40 0.19 -6.47 16 12 C 0.20 10.23 1.47 44.18 0.06 10.30 16 13 H -0.03 -1.60 6.52 -2.39 -0.02 -1.61 16 14 C -0.51 -28.42 7.61 25.60 0.19 -28.22 16 15 H 0.04 2.58 7.28 -2.91 -0.02 2.55 16 16 C 0.02 1.14 5.30 84.65 0.45 1.59 16 17 N -0.91 -51.93 11.34 21.45 0.24 -51.68 16 18 Si 0.95 44.53 29.54 68.60 2.03 46.55 16 19 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 20 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 21 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 22 C 0.08 3.86 5.76 86.31 0.50 4.36 16 23 N -0.69 -27.42 6.56 -491.11 -3.22 -30.65 16 24 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 25 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 27 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.08 2.73 8.13 -2.39 -0.02 2.71 16 29 H 0.13 4.18 8.06 -2.91 -0.02 4.15 16 30 H 0.15 3.23 8.06 -2.91 -0.02 3.21 16 31 H 0.15 3.15 8.06 -2.91 -0.02 3.13 16 32 H 0.13 3.83 8.06 -2.91 -0.02 3.81 16 33 H 0.09 4.17 6.39 -2.91 -0.02 4.15 16 34 H 0.26 14.34 8.31 -92.70 -0.77 13.57 16 35 H 0.04 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.08 4.49 6.12 -2.39 -0.01 4.48 16 37 H 0.33 12.95 8.80 -89.69 -0.79 12.16 16 Total: -1.00 -61.61 295.92 -0.07 -61.68 By element: Atomic # 1 Polarization: 25.93 SS G_CDS: 0.26 Total: 26.19 kcal Atomic # 6 Polarization: -30.30 SS G_CDS: 3.67 Total: -26.62 kcal Atomic # 7 Polarization: -101.77 SS G_CDS: -6.03 Total: -107.80 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.55 kcal Total: -61.61 -0.07 -61.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251778124.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.053 kcal (2) G-P(sol) polarization free energy of solvation -61.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds