Wall clock time and date at job start Mon Mar 30 2020 04:05:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.49163 * 2 1 4 4 C 1.53052 * 109.50607 * 120.05620 * 2 1 3 5 5 N 1.46952 * 109.36452 * 178.37830 * 4 2 1 6 6 C 1.39673 * 111.00076 * 176.81366 * 5 4 2 7 7 C 1.38908 * 120.07490 * 359.56641 * 6 5 4 8 8 C 1.38109 * 119.92690 * 179.77229 * 7 6 5 9 9 C 1.38286 * 120.07006 * 0.50740 * 8 7 6 10 10 C 1.38283 * 120.15174 * 359.74388 * 9 8 7 11 11 C 1.38105 * 120.07349 * 0.02562 * 10 9 8 12 12 C 1.46964 * 110.87911 * 300.67995 * 5 4 2 13 13 C 1.53044 * 109.36663 * 59.32266 * 12 5 4 14 14 H 1.08996 * 109.48986 * 61.56231 * 13 12 5 15 15 C 1.50694 * 109.50755 * 181.62422 * 13 12 5 16 16 H 1.08001 * 119.99939 * 359.89432 * 15 13 12 17 17 C 1.37886 * 119.99974 * 179.90302 * 15 13 12 18 18 N 1.31513 * 119.99845 * 359.97438 * 17 15 13 19 19 Si 1.86797 * 119.99763 * 179.97438 * 17 15 13 20 20 H 1.48507 * 109.47011 * 60.00202 * 19 17 15 21 21 H 1.48503 * 109.47167 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.47221 * 299.99711 * 19 17 15 23 23 N 1.46954 * 109.48655 * 239.95662 * 2 1 3 24 24 H 1.09001 * 109.47273 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47301 * 299.99929 * 1 2 3 26 26 H 1.09003 * 109.47201 * 59.99376 * 1 2 3 27 27 H 1.08999 * 109.48549 * 298.34468 * 4 2 1 28 28 H 1.08996 * 109.48872 * 58.41254 * 4 2 1 29 29 H 1.08003 * 120.03811 * 0.02562 * 7 6 5 30 30 H 1.08000 * 119.96493 * 180.24934 * 8 7 6 31 31 H 1.08000 * 119.91982 * 179.72492 * 9 8 7 32 32 H 1.08003 * 119.96172 * 179.97438 * 10 9 8 33 33 H 1.08004 * 120.03177 * 179.97438 * 11 10 9 34 34 H 1.09002 * 109.48740 * 299.35313 * 12 5 4 35 35 H 1.09006 * 109.48425 * 179.28892 * 12 5 4 36 36 H 0.97001 * 120.00046 * 179.97438 * 18 17 15 37 37 H 1.00900 * 110.99890 * 56.82541 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0410 -0.7226 1.2487 5 7 3.5100 -0.7548 1.2261 6 6 4.0157 -1.3442 2.3870 7 6 3.1480 -1.7963 3.3730 8 6 3.6511 -2.3829 4.5176 9 6 5.0176 -2.5109 4.6873 10 6 5.8844 -2.0572 3.7101 11 6 5.3877 -1.4740 2.5610 12 6 4.0003 -1.4484 0.0267 13 6 3.4893 -0.7259 -1.2219 14 1 3.8752 0.2934 -1.2357 15 6 3.9571 -1.4575 -2.4535 16 1 4.5604 -2.3480 -2.3561 17 6 3.6152 -0.9898 -3.7047 18 7 2.8804 0.0944 -3.8233 19 14 4.1957 -1.8964 -5.2313 20 1 3.6709 -3.2855 -5.2117 21 1 3.6969 -1.1964 -6.4424 22 1 5.6802 -1.9282 -5.2536 23 7 2.0202 -0.6936 -1.1992 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 1.7026 -0.1930 2.1393 28 1 1.6551 -1.7418 1.2625 29 1 2.0808 -1.6929 3.2428 30 1 2.9769 -2.7382 5.2827 31 1 5.4085 -2.9659 5.5853 32 1 6.9511 -2.1583 3.8460 33 1 6.0654 -1.1195 1.7984 34 1 3.6366 -2.4760 0.0267 35 1 5.0904 -1.4481 0.0266 36 1 2.6401 0.4236 -4.7035 37 1 1.6549 -0.2678 -2.0379 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251822840.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:31 Heat of formation + Delta-G solvation = 34.490123 kcal Electronic energy + Delta-G solvation = -17989.282798 eV Core-core repulsion = 15345.098533 eV Total energy + Delta-G solvation = -2644.184265 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.84782 -37.52576 -34.29492 -33.12069 -31.11680 -30.44125 -28.90146 -26.77401 -25.67790 -24.15163 -22.30536 -20.90159 -20.40947 -18.80396 -17.30515 -16.34252 -15.27353 -15.09512 -15.02795 -14.59656 -14.10428 -13.73692 -13.52924 -13.35435 -13.09573 -12.77907 -12.22054 -11.81055 -11.68339 -11.49749 -11.22222 -11.00247 -10.90820 -10.82110 -10.51049 -10.44175 -10.06001 -9.70951 -9.31912 -9.08418 -8.70633 -8.61732 -7.38828 -6.93838 -6.14930 -4.18299 1.63914 1.68306 3.29022 3.33480 3.36410 3.97695 4.31207 4.42956 5.06063 5.09802 5.16420 5.33915 5.46061 5.53277 5.65517 5.72051 5.80067 5.85766 5.96902 6.06560 6.15333 6.21597 6.24441 6.34614 6.53088 6.57355 6.59492 6.65706 6.76756 6.80906 6.83378 7.09384 7.36165 7.57146 7.77451 7.85181 8.10471 8.58415 8.91829 9.05198 9.49758 10.95731 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.026256 B = 0.006563 C = 0.005471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.166198 B = 4265.321630 C = 5116.362773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.076 3.924 3 H 0.030 0.970 4 C 0.066 3.934 5 N -0.495 5.495 6 C 0.130 3.870 7 C -0.180 4.180 8 C -0.096 4.096 9 C -0.164 4.164 10 C -0.096 4.096 11 C -0.146 4.146 12 C 0.074 3.926 13 C 0.219 3.781 14 H 0.006 0.994 15 C -0.508 4.508 16 H 0.060 0.940 17 C 0.069 3.931 18 N -0.899 5.899 19 Si 0.901 3.099 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.277 1.277 23 N -0.680 5.680 24 H 0.057 0.943 25 H 0.047 0.953 26 H 0.054 0.946 27 H 0.068 0.932 28 H 0.047 0.953 29 H 0.124 0.876 30 H 0.116 0.884 31 H 0.114 0.886 32 H 0.118 0.882 33 H 0.124 0.876 34 H 0.040 0.960 35 H 0.070 0.930 36 H 0.265 0.735 37 H 0.366 0.634 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.253 -2.289 12.248 12.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.035 4.035 3 H 0.048 0.952 4 C -0.061 4.061 5 N -0.208 5.208 6 C 0.030 3.970 7 C -0.201 4.201 8 C -0.114 4.114 9 C -0.183 4.183 10 C -0.115 4.115 11 C -0.167 4.167 12 C -0.050 4.050 13 C 0.111 3.889 14 H 0.023 0.977 15 C -0.547 4.547 16 H 0.078 0.922 17 C -0.133 4.133 18 N -0.539 5.539 19 Si 0.729 3.271 20 H -0.201 1.201 21 H -0.213 1.213 22 H -0.202 1.202 23 N -0.319 5.319 24 H 0.076 0.924 25 H 0.066 0.934 26 H 0.073 0.927 27 H 0.086 0.914 28 H 0.065 0.935 29 H 0.142 0.858 30 H 0.134 0.866 31 H 0.132 0.868 32 H 0.136 0.864 33 H 0.142 0.858 34 H 0.059 0.941 35 H 0.088 0.912 36 H 0.075 0.925 37 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -0.261 -2.266 12.241 12.452 hybrid contribution 0.194 -0.126 -0.984 1.010 sum -0.067 -2.392 11.257 11.509 Atomic orbital electron populations 1.21728 0.95412 1.01735 1.00752 1.21437 0.93968 0.95601 0.92539 0.95216 1.22312 0.85697 0.99856 0.98251 1.59253 1.09685 1.49941 1.01929 1.19219 0.93535 0.91890 0.92334 1.21315 0.99663 1.02946 0.96211 1.20925 0.95303 0.98312 0.96884 1.20931 0.93530 1.04120 0.99714 1.20951 0.99300 0.97688 0.93529 1.20853 0.93848 1.03054 0.98913 1.22523 0.99067 0.95891 0.87542 1.19053 0.84823 0.94645 0.90394 0.97666 1.21019 1.32070 1.11623 0.89975 0.92156 1.24964 0.94541 0.94598 0.99167 1.69662 1.37733 1.22282 1.24222 0.86515 0.78968 0.79884 0.81762 1.20125 1.21270 1.20249 1.61069 1.11091 1.55849 1.03872 0.92381 0.93382 0.92675 0.91361 0.93485 0.85814 0.86640 0.86807 0.86377 0.85780 0.94129 0.91156 0.92479 0.80984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 9.46 37.16 0.35 -1.92 16 2 C 0.08 1.51 3.19 -67.66 -0.22 1.29 16 3 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 4 C 0.07 1.21 3.58 -3.77 -0.01 1.19 16 5 N -0.50 -9.68 4.76 -170.96 -0.81 -10.49 16 6 C 0.13 2.27 5.64 -83.79 -0.47 1.79 16 7 C -0.18 -2.77 8.82 -39.38 -0.35 -3.12 16 8 C -0.10 -1.27 10.04 -39.61 -0.40 -1.67 16 9 C -0.16 -2.10 10.04 -39.55 -0.40 -2.49 16 10 C -0.10 -1.31 10.04 -39.61 -0.40 -1.71 16 11 C -0.15 -2.36 9.19 -39.38 -0.36 -2.72 16 12 C 0.07 1.62 4.60 -3.77 -0.02 1.60 16 13 C 0.22 5.51 2.55 -68.81 -0.18 5.33 16 14 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 15 C -0.51 -13.72 8.77 -34.44 -0.30 -14.02 16 16 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 17 C 0.07 1.87 5.35 -17.82 -0.10 1.77 16 18 N -0.90 -24.83 11.49 55.43 0.64 -24.20 16 19 Si 0.90 20.92 29.54 -169.99 -5.02 15.90 16 20 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 21 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 22 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 23 N -0.68 -16.17 6.17 -100.82 -0.62 -16.79 16 24 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 25 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.07 1.10 7.15 -51.93 -0.37 0.73 16 28 H 0.05 0.87 7.60 -51.93 -0.39 0.47 16 29 H 0.12 1.78 5.81 -52.48 -0.31 1.47 16 30 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 31 H 0.11 1.16 8.06 -52.49 -0.42 0.74 16 32 H 0.12 1.31 8.06 -52.48 -0.42 0.88 16 33 H 0.12 1.98 7.18 -52.48 -0.38 1.61 16 34 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.07 1.48 6.81 -51.93 -0.35 1.13 16 36 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 37 H 0.37 9.41 6.64 -39.29 -0.26 9.15 16 LS Contribution 294.81 15.07 4.44 4.44 Total: -1.00 -27.79 294.81 -9.63 -37.42 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: -5.41 Total: 8.39 kcal Atomic # 6 Polarization: -11.82 SS G_CDS: -2.84 Total: -14.66 kcal Atomic # 7 Polarization: -50.69 SS G_CDS: -0.80 Total: -51.48 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -27.79 -9.63 -37.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251822840.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.909 kcal (2) G-P(sol) polarization free energy of solvation -27.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds