Wall clock time and date at job start Mon Mar 30 2020 04:05:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.49163 * 2 1 4 4 C 1.53052 * 109.50607 * 120.05620 * 2 1 3 5 5 N 1.46952 * 109.36452 * 178.37830 * 4 2 1 6 6 C 1.39673 * 111.00076 * 176.81366 * 5 4 2 7 7 C 1.38908 * 120.07490 * 359.56641 * 6 5 4 8 8 C 1.38109 * 119.92690 * 179.77229 * 7 6 5 9 9 C 1.38286 * 120.07006 * 0.50740 * 8 7 6 10 10 C 1.38283 * 120.15174 * 359.74388 * 9 8 7 11 11 C 1.38105 * 120.07349 * 0.02562 * 10 9 8 12 12 C 1.46964 * 110.87911 * 300.67995 * 5 4 2 13 13 C 1.53044 * 109.36663 * 59.32266 * 12 5 4 14 14 H 1.08996 * 109.48986 * 61.56231 * 13 12 5 15 15 C 1.50694 * 109.50755 * 181.62422 * 13 12 5 16 16 H 1.08001 * 119.99939 * 359.89432 * 15 13 12 17 17 C 1.37886 * 119.99974 * 179.90302 * 15 13 12 18 18 N 1.31513 * 119.99845 * 359.97438 * 17 15 13 19 19 Si 1.86797 * 119.99763 * 179.97438 * 17 15 13 20 20 H 1.48507 * 109.47011 * 60.00202 * 19 17 15 21 21 H 1.48503 * 109.47167 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.47221 * 299.99711 * 19 17 15 23 23 N 1.46954 * 109.48655 * 239.95662 * 2 1 3 24 24 H 1.09001 * 109.47273 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47301 * 299.99929 * 1 2 3 26 26 H 1.09003 * 109.47201 * 59.99376 * 1 2 3 27 27 H 1.08999 * 109.48549 * 298.34468 * 4 2 1 28 28 H 1.08996 * 109.48872 * 58.41254 * 4 2 1 29 29 H 1.08003 * 120.03811 * 0.02562 * 7 6 5 30 30 H 1.08000 * 119.96493 * 180.24934 * 8 7 6 31 31 H 1.08000 * 119.91982 * 179.72492 * 9 8 7 32 32 H 1.08003 * 119.96172 * 179.97438 * 10 9 8 33 33 H 1.08004 * 120.03177 * 179.97438 * 11 10 9 34 34 H 1.09002 * 109.48740 * 299.35313 * 12 5 4 35 35 H 1.09006 * 109.48425 * 179.28892 * 12 5 4 36 36 H 0.97001 * 120.00046 * 179.97438 * 18 17 15 37 37 H 1.00900 * 110.99890 * 56.82541 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0410 -0.7226 1.2487 5 7 3.5100 -0.7548 1.2261 6 6 4.0157 -1.3442 2.3870 7 6 3.1480 -1.7963 3.3730 8 6 3.6511 -2.3829 4.5176 9 6 5.0176 -2.5109 4.6873 10 6 5.8844 -2.0572 3.7101 11 6 5.3877 -1.4740 2.5610 12 6 4.0003 -1.4484 0.0267 13 6 3.4893 -0.7259 -1.2219 14 1 3.8752 0.2934 -1.2357 15 6 3.9571 -1.4575 -2.4535 16 1 4.5604 -2.3480 -2.3561 17 6 3.6152 -0.9898 -3.7047 18 7 2.8804 0.0944 -3.8233 19 14 4.1957 -1.8964 -5.2313 20 1 3.6709 -3.2855 -5.2117 21 1 3.6969 -1.1964 -6.4424 22 1 5.6802 -1.9282 -5.2536 23 7 2.0202 -0.6936 -1.1992 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 1.7026 -0.1930 2.1393 28 1 1.6551 -1.7418 1.2625 29 1 2.0808 -1.6929 3.2428 30 1 2.9769 -2.7382 5.2827 31 1 5.4085 -2.9659 5.5853 32 1 6.9511 -2.1583 3.8460 33 1 6.0654 -1.1195 1.7984 34 1 3.6366 -2.4760 0.0267 35 1 5.0904 -1.4481 0.0266 36 1 2.6401 0.4236 -4.7035 37 1 1.6549 -0.2678 -2.0379 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251822840.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:31 Heat of formation + Delta-G solvation = 16.851767 kcal Electronic energy + Delta-G solvation = -17990.047654 eV Core-core repulsion = 15345.098533 eV Total energy + Delta-G solvation = -2644.949121 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.21581 -38.94648 -35.89845 -34.90291 -32.80292 -31.73371 -30.21493 -28.41259 -27.41442 -25.74687 -23.60548 -22.31815 -21.90641 -20.46543 -18.83135 -18.09242 -16.89994 -16.52917 -16.37142 -16.28221 -15.77701 -15.30104 -14.83632 -14.69481 -14.62140 -14.23210 -13.57098 -13.43938 -13.26246 -12.96817 -12.79930 -12.58590 -12.48576 -12.32565 -12.17882 -11.82249 -11.74651 -11.41622 -11.17918 -10.68739 -10.55755 -9.81384 -8.88305 -8.71840 -8.20918 -6.32801 0.51752 0.53274 1.42724 1.44576 1.52280 2.39870 2.75098 3.04788 3.06640 3.80781 3.92913 4.00806 4.13677 4.25631 4.31982 4.33628 4.45054 4.48527 4.61538 4.66793 4.69302 4.73963 4.79473 4.89110 5.10935 5.14738 5.17984 5.23258 5.40753 5.43129 5.55741 5.68377 5.72822 5.94389 6.01309 6.17547 6.45918 6.57670 6.90974 7.06039 7.39174 8.88607 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.026256 B = 0.006563 C = 0.005471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.166198 B = 4265.321630 C = 5116.362773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.070 3.930 3 H 0.008 0.992 4 C 0.073 3.927 5 N -0.508 5.508 6 C 0.095 3.905 7 C -0.186 4.186 8 C -0.095 4.095 9 C -0.154 4.154 10 C -0.097 4.097 11 C -0.165 4.165 12 C 0.093 3.907 13 C 0.221 3.779 14 H -0.039 1.039 15 C -0.533 4.533 16 H 0.057 0.943 17 C 0.024 3.976 18 N -0.922 5.922 19 Si 0.966 3.034 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.271 1.271 23 N -0.685 5.685 24 H 0.061 0.939 25 H 0.081 0.919 26 H 0.048 0.952 27 H 0.095 0.905 28 H 0.046 0.954 29 H 0.132 0.868 30 H 0.149 0.851 31 H 0.149 0.851 32 H 0.144 0.856 33 H 0.112 0.888 34 H 0.027 0.973 35 H 0.067 0.933 36 H 0.267 0.733 37 H 0.351 0.649 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.435 -3.573 14.334 14.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.041 4.041 3 H 0.026 0.974 4 C -0.054 4.054 5 N -0.222 5.222 6 C -0.003 4.003 7 C -0.207 4.207 8 C -0.113 4.113 9 C -0.173 4.173 10 C -0.115 4.115 11 C -0.185 4.185 12 C -0.033 4.033 13 C 0.112 3.888 14 H -0.022 1.022 15 C -0.572 4.572 16 H 0.076 0.924 17 C -0.175 4.175 18 N -0.562 5.562 19 Si 0.791 3.209 20 H -0.197 1.197 21 H -0.207 1.207 22 H -0.197 1.197 23 N -0.321 5.321 24 H 0.081 0.919 25 H 0.100 0.900 26 H 0.067 0.933 27 H 0.113 0.887 28 H 0.064 0.936 29 H 0.150 0.850 30 H 0.166 0.834 31 H 0.167 0.833 32 H 0.162 0.838 33 H 0.130 0.870 34 H 0.046 0.954 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -0.439 -3.558 14.370 14.810 hybrid contribution 0.289 0.272 -1.496 1.548 sum -0.150 -3.286 12.874 13.287 Atomic orbital electron populations 1.21658 0.92404 1.02426 1.02119 1.21638 0.96414 0.94228 0.91809 0.97430 1.22292 0.85172 0.99788 0.98111 1.59234 1.10375 1.50722 1.01883 1.19371 0.94495 0.94256 0.92153 1.21498 0.99865 1.02891 0.96426 1.21338 0.96279 0.97052 0.96634 1.21403 0.93277 1.02346 1.00247 1.21285 1.01026 0.96611 0.92612 1.20971 0.93441 1.04130 0.99999 1.22124 0.98689 0.94720 0.87768 1.18904 0.85789 0.92352 0.91719 1.02156 1.21336 1.32687 1.11865 0.91315 0.92431 1.25745 0.94531 0.95296 1.01977 1.69784 1.38288 1.23301 1.24842 0.85491 0.78629 0.78650 0.78087 1.19703 1.20696 1.19655 1.61057 1.10010 1.56351 1.04672 0.91945 0.90041 0.93293 0.88691 0.93567 0.85041 0.83376 0.83301 0.83801 0.87024 0.95450 0.91457 0.92387 0.82700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.09 9.46 71.98 0.68 -3.41 16 2 C 0.07 2.84 3.19 44.92 0.14 2.98 16 3 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 4 C 0.07 2.65 3.58 86.31 0.31 2.96 16 5 N -0.51 -20.31 4.76 -694.79 -3.30 -23.61 16 6 C 0.10 3.29 5.64 38.21 0.22 3.51 16 7 C -0.19 -5.34 8.82 22.40 0.20 -5.14 16 8 C -0.09 -2.16 10.04 22.25 0.22 -1.94 16 9 C -0.15 -3.32 10.04 22.29 0.22 -3.09 16 10 C -0.10 -2.40 10.04 22.25 0.22 -2.18 16 11 C -0.16 -5.27 9.19 22.40 0.21 -5.06 16 12 C 0.09 4.23 4.60 86.31 0.40 4.62 16 13 C 0.22 11.73 2.55 44.17 0.11 11.84 16 14 H -0.04 -2.36 8.14 -2.39 -0.02 -2.38 16 15 C -0.53 -29.94 8.77 25.60 0.22 -29.72 16 16 H 0.06 3.17 7.74 -2.91 -0.02 3.14 16 17 C 0.02 1.33 5.35 84.66 0.45 1.78 16 18 N -0.92 -52.51 11.49 21.45 0.25 -52.26 16 19 Si 0.97 43.54 29.54 68.60 2.03 45.57 16 20 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 21 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 22 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 23 N -0.68 -33.85 6.17 -472.90 -2.92 -36.77 16 24 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 25 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 26 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.09 2.90 7.15 -2.39 -0.02 2.89 16 28 H 0.05 1.67 7.60 -2.39 -0.02 1.65 16 29 H 0.13 3.46 5.81 -2.91 -0.02 3.45 16 30 H 0.15 2.41 8.06 -2.91 -0.02 2.39 16 31 H 0.15 2.20 8.06 -2.91 -0.02 2.18 16 32 H 0.14 2.74 8.06 -2.91 -0.02 2.72 16 33 H 0.11 3.72 7.18 -2.91 -0.02 3.70 16 34 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.07 3.02 6.81 -2.38 -0.02 3.00 16 36 H 0.27 14.41 8.31 -92.71 -0.77 13.64 16 37 H 0.35 18.87 6.64 -89.69 -0.60 18.27 16 Total: -1.00 -62.41 294.81 0.12 -62.30 By element: Atomic # 1 Polarization: 27.18 SS G_CDS: 0.46 Total: 27.63 kcal Atomic # 6 Polarization: -26.45 SS G_CDS: 3.61 Total: -22.84 kcal Atomic # 7 Polarization: -106.67 SS G_CDS: -5.98 Total: -112.65 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -62.41 0.12 -62.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251822840.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.147 kcal (2) G-P(sol) polarization free energy of solvation -62.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds