Wall clock time and date at job start Mon Mar 30 2020 04:05:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.49258 * 2 1 4 4 C 1.53053 * 109.48746 * 239.93552 * 2 1 3 5 5 N 1.46959 * 109.36396 * 298.43820 * 4 2 1 6 6 C 1.39673 * 110.99771 * 176.81004 * 5 4 2 7 7 C 1.38910 * 120.08005 * 359.71916 * 6 5 4 8 8 C 1.38098 * 119.92726 * 179.76607 * 7 6 5 9 9 C 1.38282 * 120.07507 * 0.51191 * 8 7 6 10 10 C 1.38291 * 120.15274 * 359.74388 * 9 8 7 11 11 C 1.38104 * 120.06987 * 359.97438 * 10 9 8 12 12 C 1.46955 * 110.87690 * 300.67431 * 5 4 2 13 13 C 1.53051 * 109.36422 * 59.32144 * 12 5 4 14 14 H 1.09005 * 109.48877 * 61.56815 * 13 12 5 15 15 C 1.50697 * 109.48871 * 181.62549 * 13 12 5 16 16 H 1.07999 * 120.00159 * 359.89681 * 15 13 12 17 17 C 1.37878 * 119.99929 * 179.88933 * 15 13 12 18 18 N 1.31517 * 120.00083 * 180.02562 * 17 15 13 19 19 Si 1.86803 * 120.00116 * 0.02562 * 17 15 13 20 20 H 1.48500 * 109.46981 * 89.99557 * 19 17 15 21 21 H 1.48500 * 109.47185 * 209.99464 * 19 17 15 22 22 H 1.48497 * 109.46785 * 329.99873 * 19 17 15 23 23 N 1.46955 * 109.49212 * 120.04602 * 2 1 3 24 24 H 1.09003 * 109.46841 * 299.95364 * 1 2 3 25 25 H 1.09000 * 109.47169 * 59.95257 * 1 2 3 26 26 H 1.08996 * 109.47311 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.48743 * 58.40196 * 4 2 1 28 28 H 1.08995 * 109.49074 * 178.44386 * 4 2 1 29 29 H 1.08006 * 120.03131 * 0.02562 * 7 6 5 30 30 H 1.08001 * 119.96641 * 180.25301 * 8 7 6 31 31 H 1.08001 * 119.92402 * 179.71967 * 9 8 7 32 32 H 1.07999 * 119.96700 * 180.02562 * 10 9 8 33 33 H 1.08001 * 120.03742 * 180.02562 * 11 10 9 34 34 H 1.09001 * 109.48648 * 179.28882 * 12 5 4 35 35 H 1.08998 * 109.49377 * 299.35614 * 12 5 4 36 36 H 0.96998 * 120.00286 * 180.02562 * 18 17 15 37 37 H 1.00901 * 111.00068 * 184.50843 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0406 -0.7228 -1.2487 5 7 1.5807 -2.1184 -1.2262 6 6 1.9675 -2.7917 -2.3872 7 6 2.6860 -2.1254 -3.3718 8 6 3.0710 -2.7955 -4.5163 9 6 2.7330 -4.1253 -4.6876 10 6 2.0132 -4.7904 -3.7118 11 6 1.6300 -4.1279 -2.5622 12 6 2.0711 -2.8121 -0.0270 13 6 1.5606 -2.0892 1.2218 14 1 0.4709 -2.1130 1.2358 15 6 2.0945 -2.7747 2.4530 16 1 2.7327 -3.6405 2.3552 17 6 1.7684 -2.2965 3.7044 18 7 2.2348 -2.8944 4.7790 19 14 0.6642 -0.7993 3.8736 20 1 -0.7536 -1.2353 3.9434 21 1 1.0168 -0.0617 5.1134 22 1 0.8516 0.0892 2.6987 23 7 2.0204 -0.6936 1.1992 24 1 -0.3633 0.5131 0.8904 25 1 -0.3633 0.5146 -0.8896 26 1 -0.3634 -1.0276 -0.0005 27 1 1.6543 -0.2271 -2.1394 28 1 3.1302 -0.6988 -1.2629 29 1 2.9467 -1.0856 -3.2404 30 1 3.6331 -2.2791 -5.2804 31 1 3.0314 -4.6457 -5.5856 32 1 1.7512 -5.8291 -3.8485 33 1 1.0683 -4.6479 -1.8003 34 1 1.7070 -3.8395 -0.0268 35 1 3.1611 -2.8121 -0.0270 36 1 2.0051 -2.5582 5.6594 37 1 3.0263 -0.6433 1.2601 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251822844.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:33 Heat of formation + Delta-G solvation = 49.801431 kcal Electronic energy + Delta-G solvation = -18262.945778 eV Core-core repulsion = 15619.425462 eV Total energy + Delta-G solvation = -2643.520316 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.17509 -37.97992 -34.40452 -32.90563 -31.30437 -30.55172 -29.04937 -27.23479 -25.73150 -24.25359 -22.51306 -21.12159 -20.74248 -18.63989 -17.60432 -16.76291 -15.49732 -15.19273 -14.67575 -14.65542 -14.35633 -13.85056 -13.80319 -13.39920 -13.16305 -12.79552 -12.52877 -12.41693 -11.52965 -11.48295 -11.35238 -11.17647 -10.94793 -10.75441 -10.67074 -10.17314 -10.07773 -9.76803 -9.33619 -9.15714 -8.81604 -8.52174 -7.54670 -7.05295 -6.03381 -4.13928 1.52770 1.56248 3.51184 3.60773 3.83992 3.92391 4.18212 4.69283 4.93725 4.97304 5.06406 5.23391 5.33145 5.38916 5.48096 5.55816 5.58979 5.68267 5.76845 5.91503 5.95771 6.03219 6.12859 6.18122 6.24207 6.44269 6.47963 6.55561 6.57244 6.67384 6.78671 6.92301 6.99873 7.38181 7.59866 7.63520 8.12435 8.18875 8.61086 8.94876 9.60886 11.06147 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.033893 B = 0.006869 C = 0.006106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.920336 B = 4075.381843 C = 4584.407335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.078 3.922 3 H 0.074 0.926 4 C 0.022 3.978 5 N -0.487 5.487 6 C 0.125 3.875 7 C -0.179 4.179 8 C -0.096 4.096 9 C -0.160 4.160 10 C -0.096 4.096 11 C -0.143 4.143 12 C 0.044 3.956 13 C 0.188 3.812 14 H 0.052 0.948 15 C -0.530 4.530 16 H 0.069 0.931 17 C 0.087 3.913 18 N -0.899 5.899 19 Si 0.858 3.142 20 H -0.295 1.295 21 H -0.305 1.305 22 H -0.184 1.184 23 N -0.671 5.671 24 H 0.055 0.945 25 H 0.043 0.957 26 H 0.067 0.933 27 H 0.073 0.927 28 H 0.039 0.961 29 H 0.123 0.877 30 H 0.116 0.884 31 H 0.115 0.885 32 H 0.120 0.880 33 H 0.125 0.875 34 H 0.078 0.922 35 H 0.036 0.964 36 H 0.263 0.737 37 H 0.332 0.668 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.258 2.841 -16.297 16.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.033 4.033 3 H 0.092 0.908 4 C -0.107 4.107 5 N -0.201 5.201 6 C 0.026 3.974 7 C -0.201 4.201 8 C -0.115 4.115 9 C -0.180 4.180 10 C -0.114 4.114 11 C -0.164 4.164 12 C -0.082 4.082 13 C 0.081 3.919 14 H 0.069 0.931 15 C -0.568 4.568 16 H 0.087 0.913 17 C -0.117 4.117 18 N -0.535 5.535 19 Si 0.685 3.315 20 H -0.223 1.223 21 H -0.233 1.233 22 H -0.105 1.105 23 N -0.302 5.302 24 H 0.074 0.926 25 H 0.062 0.938 26 H 0.086 0.914 27 H 0.092 0.908 28 H 0.057 0.943 29 H 0.141 0.859 30 H 0.134 0.866 31 H 0.133 0.867 32 H 0.138 0.862 33 H 0.143 0.857 34 H 0.096 0.904 35 H 0.054 0.946 36 H 0.073 0.927 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -1.291 3.131 -15.584 15.947 hybrid contribution 0.845 0.157 -0.475 0.982 sum -0.446 3.287 -16.059 16.398 Atomic orbital electron populations 1.21760 0.94612 1.02802 1.00236 1.21665 0.96512 0.97002 0.88108 0.90790 1.23046 0.97772 0.88738 1.01126 1.59238 1.56225 1.02823 1.01792 1.19207 0.92839 0.93013 0.92307 1.21288 1.01602 1.00886 0.96276 1.20929 0.99011 0.94653 0.96907 1.20962 1.02210 0.95061 0.99729 1.20981 0.97521 0.99446 0.93488 1.20869 1.02972 0.93635 0.98874 1.23033 0.97559 0.98884 0.88772 1.19667 0.97096 0.83683 0.91500 0.93066 1.20791 1.33212 1.14250 0.88582 0.91271 1.24964 0.94884 0.96684 0.95182 1.69955 1.44518 1.40916 0.98149 0.87331 0.79006 0.85538 0.79631 1.22281 1.23267 1.10540 1.61858 1.15951 1.17577 1.34800 0.92624 0.93754 0.91391 0.90834 0.94295 0.85949 0.86604 0.86697 0.86248 0.85678 0.90376 0.94556 0.92749 0.84934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 8.70 37.16 0.32 -1.93 16 2 C 0.08 1.29 3.68 -67.65 -0.25 1.04 16 3 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 4 C 0.02 0.34 3.72 -3.76 -0.01 0.33 16 5 N -0.49 -8.33 4.07 -170.95 -0.70 -9.02 16 6 C 0.13 2.00 5.64 -83.78 -0.47 1.53 16 7 C -0.18 -2.53 8.82 -39.38 -0.35 -2.88 16 8 C -0.10 -1.20 10.04 -39.62 -0.40 -1.60 16 9 C -0.16 -1.94 10.04 -39.55 -0.40 -2.34 16 10 C -0.10 -1.24 10.04 -39.61 -0.40 -1.63 16 11 C -0.14 -2.16 9.19 -39.38 -0.36 -2.52 16 12 C 0.04 0.85 4.59 -3.77 -0.02 0.84 16 13 C 0.19 4.16 1.57 -68.81 -0.11 4.06 16 14 H 0.05 1.20 5.78 -51.93 -0.30 0.90 16 15 C -0.53 -14.32 9.27 -34.44 -0.32 -14.64 16 16 H 0.07 2.05 7.99 -52.49 -0.42 1.63 16 17 C 0.09 2.48 5.47 -17.82 -0.10 2.38 16 18 N -0.90 -27.38 13.96 55.43 0.77 -26.61 16 19 Si 0.86 21.08 26.94 -169.99 -4.58 16.50 16 20 H -0.30 -7.46 7.11 56.52 0.40 -7.05 16 21 H -0.31 -7.78 7.11 56.52 0.40 -7.37 16 22 H -0.18 -4.12 4.36 56.52 0.25 -3.88 16 23 N -0.67 -13.40 2.97 -100.82 -0.30 -13.70 16 24 H 0.05 0.95 7.50 -51.93 -0.39 0.56 16 25 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.07 1.24 5.94 -51.93 -0.31 0.93 16 27 H 0.07 1.02 7.16 -51.93 -0.37 0.65 16 28 H 0.04 0.59 7.59 -51.93 -0.39 0.20 16 29 H 0.12 1.59 5.81 -52.48 -0.31 1.28 16 30 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 31 H 0.11 1.10 8.06 -52.49 -0.42 0.68 16 32 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 33 H 0.13 1.89 7.18 -52.49 -0.38 1.51 16 34 H 0.08 1.55 6.82 -51.93 -0.35 1.20 16 35 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 37 H 0.33 6.61 8.79 -39.29 -0.35 6.26 16 LS Contribution 284.76 15.07 4.29 4.29 Total: -1.00 -29.63 284.76 -8.76 -38.39 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -5.39 Total: 7.52 kcal Atomic # 6 Polarization: -14.52 SS G_CDS: -2.86 Total: -17.38 kcal Atomic # 7 Polarization: -49.10 SS G_CDS: -0.22 Total: -49.33 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.58 Total: 16.50 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -29.63 -8.76 -38.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251822844.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.192 kcal (2) G-P(sol) polarization free energy of solvation -29.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds