Wall clock time and date at job start Mon Mar 30 2020 04:05:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.49258 * 2 1 4 4 C 1.53053 * 109.48746 * 239.93552 * 2 1 3 5 5 N 1.46959 * 109.36396 * 298.43820 * 4 2 1 6 6 C 1.39673 * 110.99771 * 176.81004 * 5 4 2 7 7 C 1.38910 * 120.08005 * 359.71916 * 6 5 4 8 8 C 1.38098 * 119.92726 * 179.76607 * 7 6 5 9 9 C 1.38282 * 120.07507 * 0.51191 * 8 7 6 10 10 C 1.38291 * 120.15274 * 359.74388 * 9 8 7 11 11 C 1.38104 * 120.06987 * 359.97438 * 10 9 8 12 12 C 1.46955 * 110.87690 * 300.67431 * 5 4 2 13 13 C 1.53051 * 109.36422 * 59.32144 * 12 5 4 14 14 H 1.09005 * 109.48877 * 61.56815 * 13 12 5 15 15 C 1.50697 * 109.48871 * 181.62549 * 13 12 5 16 16 H 1.07999 * 120.00159 * 359.89681 * 15 13 12 17 17 C 1.37878 * 119.99929 * 179.88933 * 15 13 12 18 18 N 1.31517 * 120.00083 * 180.02562 * 17 15 13 19 19 Si 1.86803 * 120.00116 * 0.02562 * 17 15 13 20 20 H 1.48500 * 109.46981 * 89.99557 * 19 17 15 21 21 H 1.48500 * 109.47185 * 209.99464 * 19 17 15 22 22 H 1.48497 * 109.46785 * 329.99873 * 19 17 15 23 23 N 1.46955 * 109.49212 * 120.04602 * 2 1 3 24 24 H 1.09003 * 109.46841 * 299.95364 * 1 2 3 25 25 H 1.09000 * 109.47169 * 59.95257 * 1 2 3 26 26 H 1.08996 * 109.47311 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.48743 * 58.40196 * 4 2 1 28 28 H 1.08995 * 109.49074 * 178.44386 * 4 2 1 29 29 H 1.08006 * 120.03131 * 0.02562 * 7 6 5 30 30 H 1.08001 * 119.96641 * 180.25301 * 8 7 6 31 31 H 1.08001 * 119.92402 * 179.71967 * 9 8 7 32 32 H 1.07999 * 119.96700 * 180.02562 * 10 9 8 33 33 H 1.08001 * 120.03742 * 180.02562 * 11 10 9 34 34 H 1.09001 * 109.48648 * 179.28882 * 12 5 4 35 35 H 1.08998 * 109.49377 * 299.35614 * 12 5 4 36 36 H 0.96998 * 120.00286 * 180.02562 * 18 17 15 37 37 H 1.00901 * 111.00068 * 184.50843 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0406 -0.7228 -1.2487 5 7 1.5807 -2.1184 -1.2262 6 6 1.9675 -2.7917 -2.3872 7 6 2.6860 -2.1254 -3.3718 8 6 3.0710 -2.7955 -4.5163 9 6 2.7330 -4.1253 -4.6876 10 6 2.0132 -4.7904 -3.7118 11 6 1.6300 -4.1279 -2.5622 12 6 2.0711 -2.8121 -0.0270 13 6 1.5606 -2.0892 1.2218 14 1 0.4709 -2.1130 1.2358 15 6 2.0945 -2.7747 2.4530 16 1 2.7327 -3.6405 2.3552 17 6 1.7684 -2.2965 3.7044 18 7 2.2348 -2.8944 4.7790 19 14 0.6642 -0.7993 3.8736 20 1 -0.7536 -1.2353 3.9434 21 1 1.0168 -0.0617 5.1134 22 1 0.8516 0.0892 2.6987 23 7 2.0204 -0.6936 1.1992 24 1 -0.3633 0.5131 0.8904 25 1 -0.3633 0.5146 -0.8896 26 1 -0.3634 -1.0276 -0.0005 27 1 1.6543 -0.2271 -2.1394 28 1 3.1302 -0.6988 -1.2629 29 1 2.9467 -1.0856 -3.2404 30 1 3.6331 -2.2791 -5.2804 31 1 3.0314 -4.6457 -5.5856 32 1 1.7512 -5.8291 -3.8485 33 1 1.0683 -4.6479 -1.8003 34 1 1.7070 -3.8395 -0.0268 35 1 3.1611 -2.8121 -0.0270 36 1 2.0051 -2.5582 5.6594 37 1 3.0263 -0.6433 1.2601 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251822844.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:33 Heat of formation + Delta-G solvation = 30.788307 kcal Electronic energy + Delta-G solvation = -18263.770249 eV Core-core repulsion = 15619.425462 eV Total energy + Delta-G solvation = -2644.344787 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.43899 -39.22404 -35.80748 -34.74867 -32.94840 -31.74887 -30.22314 -28.67848 -27.44493 -25.67513 -23.80274 -22.35706 -22.16163 -20.07938 -19.18574 -18.34097 -16.89657 -16.42435 -16.22267 -16.01043 -15.77291 -15.37300 -15.23525 -14.77670 -14.33335 -14.31146 -14.09520 -13.69230 -13.14822 -12.86145 -12.72070 -12.50022 -12.41310 -12.35860 -11.87597 -11.86199 -11.66730 -11.47756 -11.16687 -10.76673 -10.53275 -9.84308 -8.77772 -8.65084 -8.24830 -6.38148 0.48473 0.50492 1.52030 1.58296 1.95448 2.61466 2.68327 3.02673 3.10469 3.65346 3.92429 4.09380 4.10216 4.13959 4.24344 4.29804 4.35297 4.44410 4.58912 4.64990 4.66641 4.74363 4.81914 4.87033 5.02408 5.10857 5.18997 5.24895 5.41019 5.47021 5.52806 5.63888 5.66245 5.91113 6.05433 6.16408 6.40512 6.42536 6.77892 6.84360 7.40208 8.88259 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.033893 B = 0.006869 C = 0.006106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.920336 B = 4075.381843 C = 4584.407335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.076 3.924 3 H 0.104 0.896 4 C 0.026 3.974 5 N -0.491 5.491 6 C 0.096 3.904 7 C -0.183 4.183 8 C -0.097 4.097 9 C -0.155 4.155 10 C -0.100 4.100 11 C -0.164 4.164 12 C 0.060 3.940 13 C 0.201 3.799 14 H 0.042 0.958 15 C -0.528 4.528 16 H 0.027 0.973 17 C 0.031 3.969 18 N -0.951 5.951 19 Si 0.920 3.080 20 H -0.304 1.304 21 H -0.316 1.316 22 H -0.145 1.145 23 N -0.680 5.680 24 H 0.050 0.950 25 H 0.072 0.928 26 H 0.044 0.956 27 H 0.098 0.902 28 H 0.042 0.958 29 H 0.135 0.865 30 H 0.147 0.853 31 H 0.146 0.854 32 H 0.140 0.860 33 H 0.111 0.889 34 H 0.063 0.937 35 H 0.021 0.979 36 H 0.262 0.738 37 H 0.333 0.667 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.381 4.784 -19.627 20.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.034 4.034 3 H 0.122 0.878 4 C -0.102 4.102 5 N -0.205 5.205 6 C -0.002 4.002 7 C -0.204 4.204 8 C -0.116 4.116 9 C -0.173 4.173 10 C -0.119 4.119 11 C -0.185 4.185 12 C -0.068 4.068 13 C 0.092 3.908 14 H 0.060 0.940 15 C -0.567 4.567 16 H 0.045 0.955 17 C -0.168 4.168 18 N -0.590 5.590 19 Si 0.745 3.255 20 H -0.232 1.232 21 H -0.245 1.245 22 H -0.066 1.066 23 N -0.311 5.311 24 H 0.069 0.931 25 H 0.091 0.909 26 H 0.063 0.937 27 H 0.117 0.883 28 H 0.060 0.940 29 H 0.153 0.847 30 H 0.165 0.835 31 H 0.164 0.836 32 H 0.158 0.842 33 H 0.129 0.871 34 H 0.082 0.918 35 H 0.039 0.961 36 H 0.071 0.929 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -1.408 5.074 -18.967 19.684 hybrid contribution 0.952 -0.571 0.407 1.182 sum -0.456 4.503 -18.560 19.104 Atomic orbital electron populations 1.21746 0.94382 1.01674 1.01440 1.21847 0.96637 0.97991 0.86910 0.87847 1.23050 0.98000 0.87683 1.01458 1.59196 1.56798 1.03478 1.01071 1.19348 0.94841 0.93623 0.92428 1.21497 1.01025 1.01565 0.96291 1.21338 0.98424 0.94914 0.96880 1.21392 1.00605 0.95145 1.00202 1.21282 0.97208 1.00534 0.92856 1.20983 1.03797 0.93937 0.99752 1.22620 0.96298 0.98238 0.89597 1.19271 0.96110 0.85056 0.90342 0.93985 1.21075 1.31675 1.13110 0.90806 0.95460 1.25841 0.96415 0.99693 0.94809 1.70098 1.46993 1.43141 0.98750 0.86479 0.76167 0.82616 0.80193 1.23167 1.24475 1.06558 1.61533 1.16119 1.15874 1.37543 0.93126 0.90875 0.93662 0.88347 0.94022 0.84700 0.83534 0.83610 0.84180 0.87079 0.91841 0.96103 0.92915 0.84827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.03 8.70 71.98 0.63 -3.40 16 2 C 0.08 2.27 3.68 44.92 0.17 2.44 16 3 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 4 C 0.03 0.74 3.72 86.31 0.32 1.06 16 5 N -0.49 -16.28 4.07 -694.77 -2.83 -19.11 16 6 C 0.10 2.93 5.64 38.22 0.22 3.14 16 7 C -0.18 -4.64 8.82 22.40 0.20 -4.44 16 8 C -0.10 -2.04 10.04 22.25 0.22 -1.82 16 9 C -0.15 -3.18 10.04 22.29 0.22 -2.95 16 10 C -0.10 -2.39 10.04 22.25 0.22 -2.16 16 11 C -0.16 -4.90 9.19 22.40 0.21 -4.69 16 12 C 0.06 2.39 4.59 86.31 0.40 2.78 16 13 C 0.20 8.97 1.57 44.17 0.07 9.04 16 14 H 0.04 1.99 5.78 -2.38 -0.01 1.97 16 15 C -0.53 -29.71 9.27 25.60 0.24 -29.47 16 16 H 0.03 1.71 7.99 -2.91 -0.02 1.69 16 17 C 0.03 1.83 5.47 84.65 0.46 2.29 16 18 N -0.95 -60.36 13.96 21.45 0.30 -60.06 16 19 Si 0.92 44.27 26.94 68.60 1.85 46.12 16 20 H -0.30 -14.95 7.11 99.48 0.71 -14.25 16 21 H -0.32 -15.74 7.11 99.48 0.71 -15.03 16 22 H -0.15 -6.07 4.36 99.48 0.43 -5.64 16 23 N -0.68 -26.11 2.97 -472.88 -1.41 -27.52 16 24 H 0.05 1.55 7.50 -2.39 -0.02 1.53 16 25 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 26 H 0.04 1.56 5.94 -2.39 -0.01 1.55 16 27 H 0.10 2.30 7.16 -2.38 -0.02 2.29 16 28 H 0.04 1.15 7.59 -2.39 -0.02 1.13 16 29 H 0.14 2.99 5.81 -2.91 -0.02 2.98 16 30 H 0.15 2.16 8.06 -2.91 -0.02 2.14 16 31 H 0.15 2.09 8.06 -2.91 -0.02 2.07 16 32 H 0.14 2.64 8.06 -2.91 -0.02 2.62 16 33 H 0.11 3.50 7.18 -2.91 -0.02 3.48 16 34 H 0.06 2.66 6.82 -2.39 -0.02 2.65 16 35 H 0.02 0.87 8.14 -2.39 -0.02 0.86 16 36 H 0.26 15.82 8.31 -92.71 -0.77 15.05 16 37 H 0.33 12.86 8.79 -89.69 -0.79 12.07 16 Total: -1.00 -66.80 284.76 1.48 -65.32 By element: Atomic # 1 Polarization: 23.42 SS G_CDS: 0.00 Total: 23.42 kcal Atomic # 6 Polarization: -31.75 SS G_CDS: 3.57 Total: -28.18 kcal Atomic # 7 Polarization: -102.75 SS G_CDS: -3.93 Total: -106.68 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 1.85 Total: 46.12 kcal Total: -66.80 1.48 -65.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251822844.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.106 kcal (2) G-P(sol) polarization free energy of solvation -66.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds