Wall clock time and date at job start Mon Mar 30 2020 03:48:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38303 * 119.96500 * 2 1 4 4 C 1.38264 * 120.15457 * 179.97438 * 3 2 1 5 5 C 1.38131 * 120.07125 * 0.24986 * 4 3 2 6 6 C 1.38885 * 119.92274 * 359.45386 * 5 4 3 7 7 N 1.39675 * 120.07452 * 180.27360 * 6 5 4 8 8 C 1.47440 * 111.00149 * 36.47172 * 7 6 5 9 9 C 1.54321 * 107.23209 * 123.25615 * 8 7 6 10 10 C 1.55140 * 103.01804 * 22.28787 * 9 8 7 11 11 H 1.08997 * 110.98825 * 82.47443 * 10 9 8 12 12 N 1.46501 * 110.98871 * 206.24961 * 10 9 8 13 13 C 1.36931 * 120.00432 * 273.54570 * 12 10 9 14 14 H 1.08002 * 119.99681 * 0.02562 * 13 12 10 15 15 C 1.38809 * 120.00344 * 180.02562 * 13 12 10 16 16 N 1.31622 * 120.00232 * 180.02562 * 15 13 12 17 17 Si 1.86797 * 120.00081 * 359.97438 * 15 13 12 18 18 H 1.48500 * 109.47261 * 89.99899 * 17 15 13 19 19 H 1.48496 * 109.47507 * 209.99976 * 17 15 13 20 20 H 1.48505 * 109.47156 * 330.00514 * 17 15 13 21 21 C 1.47851 * 111.00081 * 157.31943 * 7 6 5 22 22 C 1.38084 * 119.95995 * 179.97438 * 2 1 3 23 23 H 1.09005 * 109.47249 * 90.00048 * 1 2 3 24 24 H 1.08998 * 109.47375 * 209.99921 * 1 2 3 25 25 H 1.09003 * 109.47111 * 330.00252 * 1 2 3 26 26 H 1.08005 * 119.92336 * 359.97438 * 3 2 1 27 27 H 1.07997 * 119.96295 * 179.97438 * 4 3 2 28 28 H 1.08001 * 120.03544 * 179.72768 * 5 4 3 29 29 H 1.08997 * 109.89325 * 242.66867 * 8 7 6 30 30 H 1.09002 * 109.88510 * 3.85403 * 8 7 6 31 31 H 1.08999 * 110.70291 * 140.67208 * 9 8 7 32 32 H 1.08992 * 110.70946 * 263.90295 * 9 8 7 33 33 H 0.97003 * 119.99401 * 93.54839 * 12 10 9 34 34 H 0.96999 * 120.00203 * 179.97438 * 16 15 13 35 35 H 1.09000 * 110.36926 * 332.46173 * 21 7 6 36 36 H 1.08993 * 110.37612 * 94.80665 * 21 7 6 37 37 H 1.07994 * 120.03832 * 0.04720 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1982 0.0000 4 6 3.5804 1.2027 0.0005 5 6 4.2765 0.0097 -0.0041 6 6 3.5860 -1.1954 0.0021 7 7 4.2867 -2.4036 0.0032 8 6 5.5123 -2.3030 0.8165 9 6 5.4386 -3.4064 1.8928 10 6 4.4493 -4.4303 1.2765 11 1 4.9580 -5.0906 0.5742 12 7 3.7733 -5.2018 2.3224 13 6 4.3569 -6.3349 2.8229 14 1 5.3158 -6.6596 2.4468 15 6 3.7161 -7.0662 3.8135 16 7 4.2773 -8.1551 4.2950 17 14 2.0579 -6.5042 4.4645 18 1 0.9745 -7.1194 3.6564 19 1 1.9154 -6.9214 5.8825 20 1 1.9652 -5.0249 4.3720 21 6 3.4528 -3.4993 0.5418 22 6 2.1966 -1.1963 0.0005 23 1 -0.3634 0.0000 -1.0277 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5138 26 1 1.6559 2.1325 -0.0004 27 1 4.1167 2.1401 0.0001 28 1 5.3565 0.0139 -0.0082 29 1 6.3888 -2.4567 0.1871 30 1 5.5621 -1.3236 1.2924 31 1 6.4174 -3.8607 2.0465 32 1 5.0469 -3.0070 2.8282 33 1 2.9122 -4.9099 2.6604 34 1 3.8297 -8.6659 4.9875 35 1 2.7149 -3.1059 1.2411 36 1 2.9602 -4.0353 -0.2693 37 1 1.6566 -2.1316 0.0002 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259320017.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:42 Heat of formation + Delta-G solvation = 47.706214 kcal Electronic energy + Delta-G solvation = -17544.612532 eV Core-core repulsion = 14901.001360 eV Total energy + Delta-G solvation = -2643.611172 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.33027 -37.89434 -34.68413 -32.70576 -31.89501 -30.67112 -28.59184 -27.91863 -26.51794 -23.45281 -22.38906 -21.76616 -20.35130 -19.54285 -17.73016 -17.16454 -15.76906 -15.54926 -15.19772 -14.49465 -14.25119 -13.78109 -13.59836 -13.42963 -13.12158 -12.88479 -12.71520 -12.44697 -12.16772 -11.87600 -11.53802 -11.30229 -11.22594 -10.91349 -10.85032 -10.67162 -10.41528 -10.05611 -9.65407 -9.60321 -8.98707 -8.69646 -7.69139 -7.35189 -5.82861 -3.19982 1.40200 1.46585 3.33210 3.35920 3.41285 3.66130 4.09902 4.53518 4.72357 4.85504 4.94510 5.08205 5.15814 5.23843 5.32026 5.41402 5.49497 5.50980 5.54227 5.62598 5.67849 5.72858 5.80329 5.93429 5.97713 6.04034 6.15265 6.27467 6.31132 6.46337 6.58981 6.62506 6.79907 6.86468 7.09261 7.40995 7.92088 8.35854 9.12744 9.85169 10.03843 11.35142 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.027887 B = 0.005759 C = 0.005017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.800256 B = 4860.941708 C = 5579.540294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.059 4.059 3 C -0.161 4.161 4 C -0.090 4.090 5 C -0.167 4.167 6 C 0.126 3.874 7 N -0.477 5.477 8 C 0.039 3.961 9 C -0.162 4.162 10 C 0.179 3.821 11 H 0.073 0.927 12 N -0.741 5.741 13 C -0.247 4.247 14 H 0.092 0.908 15 C 0.008 3.992 16 N -0.931 5.931 17 Si 0.883 3.117 18 H -0.283 1.283 19 H -0.290 1.290 20 H -0.278 1.278 21 C 0.029 3.971 22 C -0.167 4.167 23 H 0.069 0.931 24 H 0.066 0.934 25 H 0.064 0.936 26 H 0.116 0.884 27 H 0.119 0.881 28 H 0.124 0.876 29 H 0.079 0.921 30 H 0.064 0.936 31 H 0.075 0.925 32 H 0.067 0.933 33 H 0.362 0.638 34 H 0.260 0.740 35 H 0.060 0.940 36 H 0.085 0.915 37 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.640 18.253 -8.906 20.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.060 4.060 3 C -0.180 4.180 4 C -0.109 4.109 5 C -0.188 4.188 6 C 0.026 3.974 7 N -0.189 5.189 8 C -0.087 4.087 9 C -0.203 4.203 10 C 0.068 3.932 11 H 0.091 0.909 12 N -0.383 5.383 13 C -0.377 4.377 14 H 0.110 0.890 15 C -0.188 4.188 16 N -0.578 5.578 17 Si 0.713 3.287 18 H -0.209 1.209 19 H -0.216 1.216 20 H -0.204 1.204 21 C -0.097 4.097 22 C -0.188 4.188 23 H 0.088 0.912 24 H 0.085 0.915 25 H 0.083 0.917 26 H 0.134 0.866 27 H 0.137 0.863 28 H 0.141 0.859 29 H 0.098 0.902 30 H 0.082 0.918 31 H 0.094 0.906 32 H 0.086 0.914 33 H 0.195 0.805 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.104 0.896 37 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -3.299 17.813 -9.350 20.386 hybrid contribution -1.265 0.494 1.216 1.823 sum -4.565 18.307 -8.134 20.546 Atomic orbital electron populations 1.20798 0.91399 1.02711 1.02226 1.19737 0.95774 0.92827 0.97670 1.20847 0.94198 0.97166 1.05826 1.20917 0.94147 0.97370 0.98418 1.20849 0.99781 0.91276 1.06889 1.19235 0.92278 0.90104 0.95741 1.60434 1.06712 1.03120 1.48670 1.23090 0.91669 0.99749 0.94163 1.23480 1.02402 0.96674 0.97767 1.21256 0.91065 0.90858 0.90017 0.90887 1.42638 1.22436 1.29046 1.44132 1.19049 1.03821 0.98761 1.16040 0.89027 1.24662 0.98243 0.97021 0.98893 1.69696 1.39164 1.17579 1.31410 0.86578 0.85427 0.78089 0.78601 1.20926 1.21615 1.20392 1.23528 0.96016 0.91603 0.98589 1.20949 0.92732 0.98254 1.06861 0.91193 0.91513 0.91654 0.86610 0.86278 0.85853 0.90235 0.91782 0.90640 0.91393 0.80522 0.92945 0.92153 0.89632 0.85622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.09 10.01 36.00 0.36 -0.73 16 2 C -0.06 -0.72 5.88 -104.66 -0.62 -1.34 16 3 C -0.16 -1.84 9.70 -39.55 -0.38 -2.22 16 4 C -0.09 -1.03 10.04 -39.61 -0.40 -1.42 16 5 C -0.17 -2.15 8.59 -39.38 -0.34 -2.49 16 6 C 0.13 1.83 5.78 -83.78 -0.48 1.35 16 7 N -0.48 -7.25 5.27 -167.92 -0.89 -8.13 16 8 C 0.04 0.56 6.18 -2.84 -0.02 0.54 16 9 C -0.16 -2.77 6.64 -24.91 -0.17 -2.94 16 10 C 0.18 3.42 3.68 -65.79 -0.24 3.17 16 11 H 0.07 1.44 8.13 -51.93 -0.42 1.02 16 12 N -0.74 -17.22 5.08 -51.36 -0.26 -17.48 16 13 C -0.25 -6.85 10.47 -15.06 -0.16 -7.01 16 14 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 15 C 0.01 0.23 5.50 -17.43 -0.10 0.13 16 16 N -0.93 -28.94 13.97 55.49 0.78 -28.17 16 17 Si 0.88 21.85 27.74 -169.99 -4.71 17.14 16 18 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 19 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 20 H -0.28 -6.50 6.52 56.52 0.37 -6.13 16 21 C 0.03 0.48 5.09 -2.30 -0.01 0.47 16 22 C -0.17 -2.32 8.31 -39.38 -0.33 -2.65 16 23 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.07 0.63 8.08 -51.93 -0.42 0.21 16 25 H 0.06 0.53 8.09 -51.93 -0.42 0.11 16 26 H 0.12 1.06 8.06 -52.48 -0.42 0.63 16 27 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 28 H 0.12 1.43 6.78 -52.49 -0.36 1.07 16 29 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.06 0.85 5.95 -51.93 -0.31 0.54 16 31 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.36 8.29 5.57 -40.82 -0.23 8.06 16 34 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 35 H 0.06 1.00 6.37 -51.93 -0.33 0.67 16 36 H 0.09 1.34 8.14 -51.93 -0.42 0.91 16 37 H 0.13 1.70 6.42 -52.49 -0.34 1.36 16 LS Contribution 297.21 15.07 4.48 4.48 Total: -1.00 -30.62 297.21 -8.85 -39.47 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -5.37 Total: 7.83 kcal Atomic # 6 Polarization: -12.25 SS G_CDS: -2.88 Total: -15.13 kcal Atomic # 7 Polarization: -53.41 SS G_CDS: -0.37 Total: -53.78 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.71 Total: 17.14 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -30.62 -8.85 -39.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259320017.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.176 kcal (2) G-P(sol) polarization free energy of solvation -30.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds