Wall clock time and date at job start Mon Mar 30 2020 03:48:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38303 * 119.96500 * 2 1 4 4 C 1.38264 * 120.15457 * 179.97438 * 3 2 1 5 5 C 1.38131 * 120.07125 * 0.24986 * 4 3 2 6 6 C 1.38885 * 119.92274 * 359.45386 * 5 4 3 7 7 N 1.39675 * 120.07452 * 180.27360 * 6 5 4 8 8 C 1.47440 * 111.00149 * 36.47172 * 7 6 5 9 9 C 1.54321 * 107.23209 * 123.25615 * 8 7 6 10 10 C 1.55140 * 103.01804 * 22.28787 * 9 8 7 11 11 H 1.08997 * 110.98825 * 82.47443 * 10 9 8 12 12 N 1.46501 * 110.98871 * 206.24961 * 10 9 8 13 13 C 1.36931 * 120.00432 * 273.54570 * 12 10 9 14 14 H 1.08002 * 119.99681 * 0.02562 * 13 12 10 15 15 C 1.38809 * 120.00344 * 180.02562 * 13 12 10 16 16 N 1.31622 * 120.00232 * 180.02562 * 15 13 12 17 17 Si 1.86797 * 120.00081 * 359.97438 * 15 13 12 18 18 H 1.48500 * 109.47261 * 89.99899 * 17 15 13 19 19 H 1.48496 * 109.47507 * 209.99976 * 17 15 13 20 20 H 1.48505 * 109.47156 * 330.00514 * 17 15 13 21 21 C 1.47851 * 111.00081 * 157.31943 * 7 6 5 22 22 C 1.38084 * 119.95995 * 179.97438 * 2 1 3 23 23 H 1.09005 * 109.47249 * 90.00048 * 1 2 3 24 24 H 1.08998 * 109.47375 * 209.99921 * 1 2 3 25 25 H 1.09003 * 109.47111 * 330.00252 * 1 2 3 26 26 H 1.08005 * 119.92336 * 359.97438 * 3 2 1 27 27 H 1.07997 * 119.96295 * 179.97438 * 4 3 2 28 28 H 1.08001 * 120.03544 * 179.72768 * 5 4 3 29 29 H 1.08997 * 109.89325 * 242.66867 * 8 7 6 30 30 H 1.09002 * 109.88510 * 3.85403 * 8 7 6 31 31 H 1.08999 * 110.70291 * 140.67208 * 9 8 7 32 32 H 1.08992 * 110.70946 * 263.90295 * 9 8 7 33 33 H 0.97003 * 119.99401 * 93.54839 * 12 10 9 34 34 H 0.96999 * 120.00203 * 179.97438 * 16 15 13 35 35 H 1.09000 * 110.36926 * 332.46173 * 21 7 6 36 36 H 1.08993 * 110.37612 * 94.80665 * 21 7 6 37 37 H 1.07994 * 120.03832 * 0.04720 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1982 0.0000 4 6 3.5804 1.2027 0.0005 5 6 4.2765 0.0097 -0.0041 6 6 3.5860 -1.1954 0.0021 7 7 4.2867 -2.4036 0.0032 8 6 5.5123 -2.3030 0.8165 9 6 5.4386 -3.4064 1.8928 10 6 4.4493 -4.4303 1.2765 11 1 4.9580 -5.0906 0.5742 12 7 3.7733 -5.2018 2.3224 13 6 4.3569 -6.3349 2.8229 14 1 5.3158 -6.6596 2.4468 15 6 3.7161 -7.0662 3.8135 16 7 4.2773 -8.1551 4.2950 17 14 2.0579 -6.5042 4.4645 18 1 0.9745 -7.1194 3.6564 19 1 1.9154 -6.9214 5.8825 20 1 1.9652 -5.0249 4.3720 21 6 3.4528 -3.4993 0.5418 22 6 2.1966 -1.1963 0.0005 23 1 -0.3634 0.0000 -1.0277 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5138 26 1 1.6559 2.1325 -0.0004 27 1 4.1167 2.1401 0.0001 28 1 5.3565 0.0139 -0.0082 29 1 6.3888 -2.4567 0.1871 30 1 5.5621 -1.3236 1.2924 31 1 6.4174 -3.8607 2.0465 32 1 5.0469 -3.0070 2.8282 33 1 2.9122 -4.9099 2.6604 34 1 3.8297 -8.6659 4.9875 35 1 2.7149 -3.1059 1.2411 36 1 2.9602 -4.0353 -0.2693 37 1 1.6566 -2.1316 0.0002 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259320017.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:42 Heat of formation + Delta-G solvation = 28.593546 kcal Electronic energy + Delta-G solvation = -17545.441319 eV Core-core repulsion = 14901.001360 eV Total energy + Delta-G solvation = -2644.439959 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.43158 -39.03986 -36.37815 -34.04787 -33.24839 -32.22564 -29.88270 -29.14649 -27.50024 -25.25013 -23.65083 -22.89538 -21.68365 -20.75173 -19.74475 -18.26772 -17.16574 -16.65514 -16.30950 -16.15026 -15.68165 -14.96304 -14.76095 -14.62662 -14.57962 -14.21019 -13.99698 -13.71113 -13.32196 -13.18100 -12.92782 -12.76139 -12.48111 -12.26142 -12.19775 -12.11414 -11.84327 -11.76541 -11.61238 -11.02126 -10.66738 -9.61665 -9.38395 -8.74096 -8.05564 -5.40725 0.47882 0.50854 1.35572 1.38657 1.45593 2.45209 2.61854 3.01886 3.24326 3.53137 3.63268 3.84600 4.01523 4.05841 4.20544 4.24641 4.27849 4.42202 4.51868 4.53965 4.59322 4.69832 4.82915 4.83671 4.90361 4.95200 4.97471 5.16356 5.20348 5.30673 5.35493 5.56205 5.72083 5.72465 5.91356 5.97245 6.18169 6.36960 7.02344 7.76572 7.96144 9.15687 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.027887 B = 0.005759 C = 0.005017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.800256 B = 4860.941708 C = 5579.540294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.068 4.068 3 C -0.162 4.162 4 C -0.090 4.090 5 C -0.175 4.175 6 C 0.101 3.899 7 N -0.480 5.480 8 C 0.048 3.952 9 C -0.156 4.156 10 C 0.168 3.832 11 H 0.061 0.939 12 N -0.743 5.743 13 C -0.233 4.233 14 H 0.059 0.941 15 C -0.059 4.059 16 N -0.982 5.982 17 Si 0.953 3.047 18 H -0.276 1.276 19 H -0.295 1.295 20 H -0.255 1.255 21 C 0.044 3.956 22 C -0.186 4.186 23 H 0.080 0.920 24 H 0.063 0.937 25 H 0.081 0.919 26 H 0.142 0.858 27 H 0.147 0.853 28 H 0.134 0.866 29 H 0.094 0.906 30 H 0.079 0.921 31 H 0.069 0.931 32 H 0.056 0.944 33 H 0.366 0.634 34 H 0.259 0.741 35 H 0.059 0.941 36 H 0.090 0.910 37 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.959 21.347 -9.534 23.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.069 4.069 3 C -0.180 4.180 4 C -0.109 4.109 5 C -0.196 4.196 6 C 0.002 3.998 7 N -0.193 5.193 8 C -0.078 4.078 9 C -0.197 4.197 10 C 0.058 3.942 11 H 0.079 0.921 12 N -0.386 5.386 13 C -0.364 4.364 14 H 0.077 0.923 15 C -0.251 4.251 16 N -0.632 5.632 17 Si 0.780 3.220 18 H -0.202 1.202 19 H -0.222 1.222 20 H -0.180 1.180 21 C -0.083 4.083 22 C -0.206 4.206 23 H 0.099 0.901 24 H 0.082 0.918 25 H 0.100 0.900 26 H 0.159 0.841 27 H 0.165 0.835 28 H 0.152 0.848 29 H 0.113 0.887 30 H 0.097 0.903 31 H 0.088 0.912 32 H 0.075 0.925 33 H 0.199 0.801 34 H 0.068 0.932 35 H 0.078 0.922 36 H 0.108 0.892 37 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -4.618 20.971 -10.023 23.697 hybrid contribution -0.794 -0.384 1.328 1.594 sum -5.412 20.587 -8.695 22.994 Atomic orbital electron populations 1.20844 0.89697 1.03388 1.03107 1.20083 0.97205 0.92591 0.96981 1.21239 0.94511 0.97908 1.04389 1.21292 0.94462 0.97995 0.97110 1.21069 1.00505 0.91231 1.06801 1.19415 0.92740 0.90187 0.97508 1.60526 1.06668 1.03352 1.48756 1.23070 0.92119 0.99143 0.93440 1.23316 1.01215 0.96942 0.98184 1.21433 0.92276 0.91206 0.89246 0.92064 1.42575 1.22714 1.28321 1.44985 1.18991 1.02487 0.99676 1.15216 0.92301 1.25460 1.02531 0.97346 0.99731 1.69874 1.41280 1.19404 1.32605 0.85447 0.80384 0.78846 0.77322 1.20175 1.22160 1.18009 1.23314 0.95255 0.91450 0.98300 1.21078 0.92784 0.98928 1.07855 0.90141 0.91803 0.90040 0.84051 0.83483 0.84803 0.88744 0.90307 0.91204 0.92487 0.80076 0.93229 0.92248 0.89216 0.86152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.86 10.01 71.23 0.71 -1.15 16 2 C -0.07 -1.49 5.88 -19.89 -0.12 -1.60 16 3 C -0.16 -3.12 9.70 22.29 0.22 -2.90 16 4 C -0.09 -1.75 10.04 22.25 0.22 -1.52 16 5 C -0.18 -4.06 8.59 22.40 0.19 -3.87 16 6 C 0.10 2.74 5.78 38.21 0.22 2.96 16 7 N -0.48 -13.93 5.27 -685.16 -3.61 -17.54 16 8 C 0.05 1.29 6.18 86.65 0.54 1.83 16 9 C -0.16 -5.26 6.64 31.78 0.21 -5.05 16 10 C 0.17 6.41 3.68 46.38 0.17 6.58 16 11 H 0.06 2.48 8.13 -2.39 -0.02 2.46 16 12 N -0.74 -34.56 5.08 -316.42 -1.61 -36.16 16 13 C -0.23 -13.21 10.47 84.03 0.88 -12.33 16 14 H 0.06 3.66 8.06 -2.91 -0.02 3.63 16 15 C -0.06 -3.46 5.50 84.86 0.47 -2.99 16 16 N -0.98 -62.74 13.97 21.65 0.30 -62.44 16 17 Si 0.95 45.28 27.74 68.60 1.90 47.18 16 18 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 19 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 20 H -0.26 -11.04 6.52 99.48 0.65 -10.39 16 21 C 0.04 1.39 5.09 86.77 0.44 1.84 16 22 C -0.19 -4.86 8.31 22.40 0.19 -4.67 16 23 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 24 H 0.06 1.07 8.08 -2.39 -0.02 1.05 16 25 H 0.08 1.06 8.09 -2.39 -0.02 1.04 16 26 H 0.14 1.96 8.06 -2.91 -0.02 1.94 16 27 H 0.15 1.97 8.06 -2.91 -0.02 1.95 16 28 H 0.13 2.72 6.78 -2.91 -0.02 2.70 16 29 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 30 H 0.08 1.92 5.95 -2.39 -0.01 1.90 16 31 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 32 H 0.06 2.04 8.14 -2.39 -0.02 2.03 16 33 H 0.37 16.35 5.57 -92.71 -0.52 15.83 16 34 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 35 H 0.06 1.90 6.37 -2.39 -0.02 1.89 16 36 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 37 H 0.12 3.16 6.42 -2.91 -0.02 3.14 16 Total: -1.00 -66.53 297.21 1.81 -64.72 By element: Atomic # 1 Polarization: 26.64 SS G_CDS: 0.48 Total: 27.13 kcal Atomic # 6 Polarization: -27.22 SS G_CDS: 4.34 Total: -22.89 kcal Atomic # 7 Polarization: -111.23 SS G_CDS: -4.92 Total: -116.15 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 1.90 Total: 47.18 kcal Total: -66.53 1.81 -64.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259320017.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.314 kcal (2) G-P(sol) polarization free energy of solvation -66.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds