Wall clock time and date at job start Mon Mar 30 2020 03:48:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38300 * 119.96386 * 2 1 4 4 C 1.38267 * 120.14768 * 179.97438 * 3 2 1 5 5 C 1.38125 * 120.07712 * 359.73943 * 4 3 2 6 6 C 1.38887 * 119.92038 * 0.53714 * 5 4 3 7 7 N 1.39675 * 120.07215 * 179.74703 * 6 5 4 8 8 C 1.47902 * 110.99865 * 239.59385 * 7 6 5 9 9 C 1.53990 * 107.06110 * 214.15700 * 8 7 6 10 10 C 1.54604 * 105.13739 * 1.22259 * 9 8 7 11 11 H 1.09002 * 110.72435 * 263.42345 * 10 9 8 12 12 N 1.46502 * 110.72378 * 140.31763 * 10 9 8 13 13 C 1.36940 * 119.99860 * 86.45305 * 12 10 9 14 14 H 1.07997 * 120.00090 * 0.02562 * 13 12 10 15 15 C 1.38815 * 119.99807 * 179.97438 * 13 12 10 16 16 N 1.31615 * 120.00107 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 119.99885 * 0.02562 * 15 13 12 18 18 H 1.48508 * 109.46952 * 89.99806 * 17 15 13 19 19 H 1.48494 * 109.47074 * 209.99705 * 17 15 13 20 20 H 1.48499 * 109.47202 * 330.00171 * 17 15 13 21 21 C 1.48537 * 111.00359 * 122.19911 * 7 6 5 22 22 C 1.38084 * 119.95935 * 180.02562 * 2 1 3 23 23 H 1.08993 * 109.47176 * 269.98495 * 1 2 3 24 24 H 1.09002 * 109.46506 * 29.98148 * 1 2 3 25 25 H 1.09003 * 109.46875 * 149.97873 * 1 2 3 26 26 H 1.08001 * 119.92897 * 0.02562 * 3 2 1 27 27 H 1.08008 * 119.95883 * 179.97438 * 4 3 2 28 28 H 1.08002 * 120.03910 * 180.26871 * 5 4 3 29 29 H 1.09008 * 109.91754 * 333.50397 * 8 7 6 30 30 H 1.09004 * 109.92219 * 94.60376 * 8 7 6 31 31 H 1.09000 * 110.31815 * 120.13532 * 9 8 7 32 32 H 1.08997 * 110.31114 * 242.30845 * 9 8 7 33 33 H 0.97001 * 119.99838 * 266.45206 * 12 10 9 34 34 H 0.96998 * 120.00331 * 180.02562 * 16 15 13 35 35 H 1.09003 * 110.65986 * 278.15461 * 21 7 6 36 36 H 1.09001 * 110.66613 * 41.27823 * 21 7 6 37 37 H 1.07997 * 120.04195 * 359.97438 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1981 0.0000 4 6 3.5805 1.2026 0.0005 5 6 4.2765 0.0096 0.0065 6 6 3.5859 -1.1954 0.0007 7 7 4.2867 -2.4037 0.0014 8 6 3.9536 -3.2102 -1.1928 9 6 3.9931 -4.6889 -0.7648 10 6 4.3359 -4.6638 0.7426 11 1 5.4045 -4.8126 0.8977 12 7 3.5630 -5.6759 1.4669 13 6 4.0322 -6.9590 1.5597 14 1 4.9723 -7.2248 1.0993 15 6 3.3001 -7.9178 2.2465 16 7 3.7509 -9.1512 2.3352 17 14 1.6745 -7.4579 3.0434 18 1 0.5703 -7.6682 2.0729 19 1 1.4512 -8.3092 4.2394 20 1 1.7096 -6.0304 3.4514 21 6 3.9091 -3.2375 1.1712 22 6 2.1966 -1.1963 -0.0005 23 1 -0.3633 -0.0003 1.0276 24 1 -0.3632 0.8902 -0.5136 25 1 -0.3633 -0.8898 -0.5142 26 1 1.6560 2.1325 0.0004 27 1 4.1168 2.1401 0.0001 28 1 5.3565 0.0138 0.0113 29 1 2.9555 -2.9531 -1.5480 30 1 4.6857 -3.0287 -1.9797 31 1 3.0208 -5.1551 -0.9238 32 1 4.7647 -5.2228 -1.3193 33 1 2.7188 -5.4370 1.8808 34 1 3.2392 -9.8213 2.8148 35 1 4.4560 -2.9230 2.0602 36 1 2.8338 -3.1932 1.3442 37 1 1.6567 -2.1316 -0.0005 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259320021.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:44 Heat of formation + Delta-G solvation = 47.539686 kcal Electronic energy + Delta-G solvation = -17500.401899 eV Core-core repulsion = 14856.783506 eV Total energy + Delta-G solvation = -2643.618393 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.17760 -37.92089 -34.60828 -32.80321 -31.83781 -30.45772 -28.47922 -27.51825 -26.94093 -23.30302 -22.68567 -21.39720 -20.37928 -19.75232 -17.64883 -16.93153 -16.00487 -15.72409 -14.98185 -14.26986 -14.17201 -14.00341 -13.64223 -13.42193 -13.12700 -12.72250 -12.67852 -12.45443 -11.98557 -11.69451 -11.66254 -11.41625 -11.26842 -11.07776 -10.85765 -10.58916 -10.41917 -9.97248 -9.61570 -8.95764 -8.80375 -8.55081 -8.42524 -7.31289 -5.79636 -3.16072 1.26120 1.33662 3.34748 3.37514 3.42882 3.66037 4.01800 4.56184 4.74121 4.79647 4.99592 5.11569 5.21015 5.27287 5.33667 5.37918 5.45319 5.51861 5.55858 5.64600 5.68270 5.72132 5.75806 5.98395 6.04592 6.07159 6.29355 6.32875 6.37118 6.49018 6.55098 6.68587 6.76501 6.83961 7.04300 7.53434 7.96872 8.39561 9.16908 9.89374 10.08442 11.38590 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.030225 B = 0.005487 C = 0.004946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.157690 B = 5102.058305 C = 5659.431414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.080 4.080 3 C -0.131 4.131 4 C -0.113 4.113 5 C -0.104 4.104 6 C 0.096 3.904 7 N -0.485 5.485 8 C 0.042 3.958 9 C -0.152 4.152 10 C 0.184 3.816 11 H 0.072 0.928 12 N -0.744 5.744 13 C -0.244 4.244 14 H 0.092 0.908 15 C 0.007 3.993 16 N -0.932 5.932 17 Si 0.883 3.117 18 H -0.284 1.284 19 H -0.290 1.290 20 H -0.277 1.277 21 C 0.032 3.968 22 C -0.150 4.150 23 H 0.069 0.931 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.119 0.881 27 H 0.123 0.877 28 H 0.128 0.872 29 H 0.043 0.957 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.361 0.639 34 H 0.260 0.740 35 H 0.083 0.917 36 H 0.047 0.953 37 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.690 20.667 -5.931 21.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.080 4.080 3 C -0.149 4.149 4 C -0.132 4.132 5 C -0.123 4.123 6 C 0.001 3.999 7 N -0.207 5.207 8 C -0.084 4.084 9 C -0.193 4.193 10 C 0.074 3.926 11 H 0.090 0.910 12 N -0.386 5.386 13 C -0.374 4.374 14 H 0.110 0.890 15 C -0.189 4.189 16 N -0.580 5.580 17 Si 0.713 3.287 18 H -0.211 1.211 19 H -0.216 1.216 20 H -0.204 1.204 21 C -0.095 4.095 22 C -0.170 4.170 23 H 0.088 0.912 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.137 0.863 27 H 0.141 0.859 28 H 0.146 0.854 29 H 0.061 0.939 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.194 0.806 34 H 0.070 0.930 35 H 0.101 0.899 36 H 0.066 0.934 37 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -2.984 20.538 -5.922 21.582 hybrid contribution -2.076 -0.004 0.552 2.149 sum -5.060 20.535 -5.370 21.820 Atomic orbital electron populations 1.20802 0.91370 1.02639 1.02347 1.19790 0.95928 0.92933 0.99379 1.20995 0.94337 0.97227 1.02350 1.21061 0.94134 0.97796 1.00168 1.21018 1.00287 0.90748 1.00201 1.19129 0.90240 0.92029 0.98480 1.62423 1.52777 1.01877 1.03621 1.22969 0.99412 0.93665 0.92378 1.23169 1.02635 0.93380 1.00129 1.21040 0.96321 0.85901 0.89384 0.91047 1.42731 1.23745 1.07707 1.64392 1.19076 1.05506 0.83811 1.29026 0.89019 1.24662 0.98390 0.95447 1.00434 1.69693 1.39375 1.01822 1.47107 0.86578 0.85212 0.77536 0.79386 1.21110 1.21635 1.20358 1.23607 0.99136 0.93768 0.92977 1.21624 0.94838 0.98056 1.02521 0.91183 0.91619 0.91603 0.86347 0.85946 0.85415 0.93896 0.90665 0.91074 0.91360 0.80646 0.93003 0.89851 0.93442 0.86154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.06 10.01 36.01 0.36 -0.70 16 2 C -0.08 -0.93 5.88 -104.65 -0.62 -1.54 16 3 C -0.13 -1.38 9.70 -39.55 -0.38 -1.77 16 4 C -0.11 -1.20 10.04 -39.61 -0.40 -1.60 16 5 C -0.10 -1.29 9.97 -39.38 -0.39 -1.68 16 6 C 0.10 1.35 4.85 -83.79 -0.41 0.95 16 7 N -0.49 -7.44 5.28 -167.16 -0.88 -8.33 16 8 C 0.04 0.63 6.51 -2.76 -0.02 0.61 16 9 C -0.15 -2.65 6.67 -25.37 -0.17 -2.82 16 10 C 0.18 3.59 3.70 -66.07 -0.24 3.35 16 11 H 0.07 1.46 8.12 -51.93 -0.42 1.04 16 12 N -0.74 -17.50 4.99 -51.62 -0.26 -17.76 16 13 C -0.24 -6.84 10.46 -15.06 -0.16 -7.00 16 14 H 0.09 2.75 8.06 -52.49 -0.42 2.33 16 15 C 0.01 0.19 5.50 -17.43 -0.10 0.10 16 16 N -0.93 -29.18 13.97 55.49 0.78 -28.41 16 17 Si 0.88 22.00 27.74 -169.99 -4.71 17.29 16 18 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 19 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 20 H -0.28 -6.52 6.52 56.52 0.37 -6.15 16 21 C 0.03 0.54 6.01 -1.90 -0.01 0.53 16 22 C -0.15 -2.03 7.55 -39.38 -0.30 -2.33 16 23 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.06 0.50 8.08 -51.93 -0.42 0.08 16 25 H 0.06 0.60 8.08 -51.93 -0.42 0.18 16 26 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 27 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 28 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 29 H 0.04 0.62 6.68 -51.92 -0.35 0.27 16 30 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.07 1.32 8.05 -51.93 -0.42 0.90 16 32 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.36 8.35 5.58 -40.82 -0.23 8.12 16 34 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 35 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 36 H 0.05 0.80 6.53 -51.93 -0.34 0.47 16 37 H 0.12 1.67 7.05 -52.49 -0.37 1.30 16 LS Contribution 300.84 15.07 4.53 4.53 Total: -1.00 -30.64 300.84 -8.89 -39.53 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: -5.51 Total: 7.04 kcal Atomic # 6 Polarization: -11.08 SS G_CDS: -2.83 Total: -13.90 kcal Atomic # 7 Polarization: -54.13 SS G_CDS: -0.36 Total: -54.49 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.71 Total: 17.29 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -30.64 -8.89 -39.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259320021.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.071 kcal (2) G-P(sol) polarization free energy of solvation -30.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds