Wall clock time and date at job start Mon Mar 30 2020 03:48:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38300 * 119.96386 * 2 1 4 4 C 1.38267 * 120.14768 * 179.97438 * 3 2 1 5 5 C 1.38125 * 120.07712 * 359.73943 * 4 3 2 6 6 C 1.38887 * 119.92038 * 0.53714 * 5 4 3 7 7 N 1.39675 * 120.07215 * 179.74703 * 6 5 4 8 8 C 1.47902 * 110.99865 * 239.59385 * 7 6 5 9 9 C 1.53990 * 107.06110 * 214.15700 * 8 7 6 10 10 C 1.54604 * 105.13739 * 1.22259 * 9 8 7 11 11 H 1.09002 * 110.72435 * 263.42345 * 10 9 8 12 12 N 1.46502 * 110.72378 * 140.31763 * 10 9 8 13 13 C 1.36940 * 119.99860 * 86.45305 * 12 10 9 14 14 H 1.07997 * 120.00090 * 0.02562 * 13 12 10 15 15 C 1.38815 * 119.99807 * 179.97438 * 13 12 10 16 16 N 1.31615 * 120.00107 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 119.99885 * 0.02562 * 15 13 12 18 18 H 1.48508 * 109.46952 * 89.99806 * 17 15 13 19 19 H 1.48494 * 109.47074 * 209.99705 * 17 15 13 20 20 H 1.48499 * 109.47202 * 330.00171 * 17 15 13 21 21 C 1.48537 * 111.00359 * 122.19911 * 7 6 5 22 22 C 1.38084 * 119.95935 * 180.02562 * 2 1 3 23 23 H 1.08993 * 109.47176 * 269.98495 * 1 2 3 24 24 H 1.09002 * 109.46506 * 29.98148 * 1 2 3 25 25 H 1.09003 * 109.46875 * 149.97873 * 1 2 3 26 26 H 1.08001 * 119.92897 * 0.02562 * 3 2 1 27 27 H 1.08008 * 119.95883 * 179.97438 * 4 3 2 28 28 H 1.08002 * 120.03910 * 180.26871 * 5 4 3 29 29 H 1.09008 * 109.91754 * 333.50397 * 8 7 6 30 30 H 1.09004 * 109.92219 * 94.60376 * 8 7 6 31 31 H 1.09000 * 110.31815 * 120.13532 * 9 8 7 32 32 H 1.08997 * 110.31114 * 242.30845 * 9 8 7 33 33 H 0.97001 * 119.99838 * 266.45206 * 12 10 9 34 34 H 0.96998 * 120.00331 * 180.02562 * 16 15 13 35 35 H 1.09003 * 110.65986 * 278.15461 * 21 7 6 36 36 H 1.09001 * 110.66613 * 41.27823 * 21 7 6 37 37 H 1.07997 * 120.04195 * 359.97438 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1981 0.0000 4 6 3.5805 1.2026 0.0005 5 6 4.2765 0.0096 0.0065 6 6 3.5859 -1.1954 0.0007 7 7 4.2867 -2.4037 0.0014 8 6 3.9536 -3.2102 -1.1928 9 6 3.9931 -4.6889 -0.7648 10 6 4.3359 -4.6638 0.7426 11 1 5.4045 -4.8126 0.8977 12 7 3.5630 -5.6759 1.4669 13 6 4.0322 -6.9590 1.5597 14 1 4.9723 -7.2248 1.0993 15 6 3.3001 -7.9178 2.2465 16 7 3.7509 -9.1512 2.3352 17 14 1.6745 -7.4579 3.0434 18 1 0.5703 -7.6682 2.0729 19 1 1.4512 -8.3092 4.2394 20 1 1.7096 -6.0304 3.4514 21 6 3.9091 -3.2375 1.1712 22 6 2.1966 -1.1963 -0.0005 23 1 -0.3633 -0.0003 1.0276 24 1 -0.3632 0.8902 -0.5136 25 1 -0.3633 -0.8898 -0.5142 26 1 1.6560 2.1325 0.0004 27 1 4.1168 2.1401 0.0001 28 1 5.3565 0.0138 0.0113 29 1 2.9555 -2.9531 -1.5480 30 1 4.6857 -3.0287 -1.9797 31 1 3.0208 -5.1551 -0.9238 32 1 4.7647 -5.2228 -1.3193 33 1 2.7188 -5.4370 1.8808 34 1 3.2392 -9.8213 2.8148 35 1 4.4560 -2.9230 2.0602 36 1 2.8338 -3.1932 1.3442 37 1 1.6567 -2.1316 -0.0005 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259320021.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:44 Heat of formation + Delta-G solvation = 28.507571 kcal Electronic energy + Delta-G solvation = -17501.227194 eV Core-core repulsion = 14856.783506 eV Total energy + Delta-G solvation = -2644.443687 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.26406 -39.09188 -36.32770 -34.04243 -33.31012 -32.00099 -29.73886 -28.93651 -27.77461 -25.13674 -23.95449 -22.38070 -21.71822 -21.10981 -19.72971 -18.00128 -17.18182 -16.92507 -16.38570 -15.82297 -15.59327 -15.07306 -14.85226 -14.65982 -14.59082 -14.07267 -13.86056 -13.63321 -13.27404 -13.19766 -12.83702 -12.70882 -12.64765 -12.27954 -12.20660 -12.15949 -12.00265 -11.81387 -11.54220 -11.01999 -9.71258 -9.61868 -9.47559 -9.35896 -8.04490 -5.39276 0.33975 0.45362 1.35499 1.38532 1.45976 2.45929 2.75224 2.81454 3.26206 3.65091 3.70699 3.93366 4.00969 4.04098 4.16902 4.21075 4.28194 4.43559 4.49398 4.54050 4.66783 4.74693 4.78725 4.88483 4.92910 4.93685 4.97175 5.21487 5.28236 5.28588 5.51089 5.57185 5.63966 5.66623 5.77242 5.95249 6.19576 6.44974 7.03858 7.78561 7.98262 9.16959 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.030225 B = 0.005487 C = 0.004946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.157690 B = 5102.058305 C = 5659.431414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.086 4.086 3 C -0.128 4.128 4 C -0.108 4.108 5 C -0.113 4.113 6 C 0.070 3.930 7 N -0.484 5.484 8 C 0.052 3.948 9 C -0.145 4.145 10 C 0.175 3.825 11 H 0.057 0.943 12 N -0.745 5.745 13 C -0.232 4.232 14 H 0.058 0.942 15 C -0.060 4.060 16 N -0.982 5.982 17 Si 0.953 3.047 18 H -0.278 1.278 19 H -0.294 1.294 20 H -0.253 1.253 21 C 0.045 3.955 22 C -0.166 4.166 23 H 0.075 0.925 24 H 0.085 0.915 25 H 0.062 0.938 26 H 0.148 0.852 27 H 0.152 0.848 28 H 0.133 0.867 29 H 0.050 0.950 30 H 0.090 0.910 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.365 0.635 34 H 0.259 0.741 35 H 0.084 0.916 36 H 0.048 0.952 37 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.154 24.007 -6.110 25.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.087 4.087 3 C -0.146 4.146 4 C -0.127 4.127 5 C -0.132 4.132 6 C -0.024 4.024 7 N -0.206 5.206 8 C -0.075 4.075 9 C -0.186 4.186 10 C 0.066 3.934 11 H 0.075 0.925 12 N -0.388 5.388 13 C -0.363 4.363 14 H 0.076 0.924 15 C -0.252 4.252 16 N -0.633 5.633 17 Si 0.780 3.220 18 H -0.204 1.204 19 H -0.221 1.221 20 H -0.178 1.178 21 C -0.082 4.082 22 C -0.186 4.186 23 H 0.094 0.906 24 H 0.104 0.896 25 H 0.081 0.919 26 H 0.165 0.835 27 H 0.170 0.830 28 H 0.150 0.850 29 H 0.068 0.932 30 H 0.108 0.892 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.199 0.801 34 H 0.067 0.933 35 H 0.102 0.898 36 H 0.066 0.934 37 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -4.440 23.944 -6.128 25.111 hybrid contribution -1.540 -0.948 0.536 1.886 sum -5.980 22.996 -5.591 24.410 Atomic orbital electron populations 1.20845 0.89801 1.03498 1.02935 1.20107 0.97237 0.92701 0.98655 1.21388 0.94551 0.97958 1.00701 1.21417 0.94441 0.98248 0.98567 1.21188 1.00748 0.90873 1.00379 1.19235 0.90691 0.91742 1.00765 1.62408 1.53177 1.02187 1.02803 1.22894 1.00372 0.91529 0.92692 1.22997 1.01771 0.95448 0.98364 1.21191 0.95127 0.86659 0.90462 0.92503 1.42667 1.24239 1.06866 1.65054 1.19010 1.04038 0.85732 1.27488 0.92384 1.25464 1.02587 0.95288 1.01812 1.69874 1.41341 1.03219 1.48833 0.85441 0.80201 0.78324 0.78016 1.20433 1.22089 1.17817 1.23390 0.99038 0.91999 0.93803 1.21616 0.94659 0.98515 1.03815 0.90640 0.89643 0.91935 0.83469 0.83013 0.84955 0.93171 0.89216 0.92209 0.91623 0.80146 0.93255 0.89753 0.93382 0.87286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.78 10.01 71.24 0.71 -1.07 16 2 C -0.09 -1.78 5.88 -19.88 -0.12 -1.90 16 3 C -0.13 -2.22 9.70 22.29 0.22 -2.01 16 4 C -0.11 -1.92 10.04 22.25 0.22 -1.70 16 5 C -0.11 -2.56 9.97 22.40 0.22 -2.33 16 6 C 0.07 1.86 4.85 38.21 0.19 2.05 16 7 N -0.48 -14.33 5.28 -682.77 -3.60 -17.93 16 8 C 0.05 1.48 6.51 86.44 0.56 2.05 16 9 C -0.15 -5.05 6.67 31.47 0.21 -4.84 16 10 C 0.17 6.86 3.70 46.20 0.17 7.03 16 11 H 0.06 2.39 8.12 -2.39 -0.02 2.37 16 12 N -0.75 -35.16 4.99 -317.24 -1.58 -36.75 16 13 C -0.23 -13.30 10.46 84.03 0.88 -12.42 16 14 H 0.06 3.65 8.06 -2.91 -0.02 3.63 16 15 C -0.06 -3.54 5.50 84.86 0.47 -3.08 16 16 N -0.98 -63.24 13.97 21.65 0.30 -62.94 16 17 Si 0.95 45.60 27.74 68.60 1.90 47.50 16 18 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 19 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16 20 H -0.25 -11.00 6.52 99.48 0.65 -10.35 16 21 C 0.04 1.48 6.01 86.65 0.52 2.00 16 22 C -0.17 -4.22 7.55 22.40 0.17 -4.05 16 23 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 24 H 0.08 0.99 8.08 -2.39 -0.02 0.97 16 25 H 0.06 1.01 8.08 -2.39 -0.02 0.99 16 26 H 0.15 1.69 8.06 -2.91 -0.02 1.67 16 27 H 0.15 1.76 8.06 -2.91 -0.02 1.73 16 28 H 0.13 2.78 8.06 -2.91 -0.02 2.76 16 29 H 0.05 1.38 6.68 -2.38 -0.02 1.37 16 30 H 0.09 2.34 8.14 -2.38 -0.02 2.32 16 31 H 0.06 2.21 8.05 -2.39 -0.02 2.19 16 32 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 33 H 0.37 16.52 5.58 -92.71 -0.52 16.00 16 34 H 0.26 15.83 8.31 -92.71 -0.77 15.06 16 35 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 36 H 0.05 1.58 6.53 -2.39 -0.02 1.57 16 37 H 0.11 2.94 7.05 -2.91 -0.02 2.91 16 Total: -1.00 -66.80 300.84 1.92 -64.89 By element: Atomic # 1 Polarization: 25.01 SS G_CDS: 0.47 Total: 25.49 kcal Atomic # 6 Polarization: -24.68 SS G_CDS: 4.42 Total: -20.26 kcal Atomic # 7 Polarization: -112.73 SS G_CDS: -4.88 Total: -117.62 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 1.90 Total: 47.50 kcal Total: -66.80 1.92 -64.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259320021.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.396 kcal (2) G-P(sol) polarization free energy of solvation -66.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.889 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds