Wall clock time and date at job start Mon Mar 30 2020 03:48:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38286 * 119.92274 * 2 1 4 4 C 1.38103 * 120.07649 * 179.97438 * 3 2 1 5 5 C 1.38915 * 119.92010 * 359.97438 * 4 3 2 6 6 N 1.39675 * 120.07060 * 179.97438 * 5 4 3 7 7 C 1.48562 * 111.00298 * 59.87243 * 6 5 4 8 8 C 1.54379 * 104.69842 * 159.09832 * 7 6 5 9 9 C 1.54257 * 105.06256 * 336.08765 * 8 7 6 10 10 H 1.08997 * 110.32124 * 118.89793 * 9 8 7 11 11 N 1.46500 * 110.32527 * 241.00222 * 9 8 7 12 12 C 1.36936 * 120.00157 * 273.54790 * 11 9 8 13 13 H 1.08001 * 119.99791 * 359.97438 * 12 11 9 14 14 C 1.38809 * 119.99964 * 179.97438 * 12 11 9 15 15 N 1.31614 * 120.00266 * 0.02562 * 14 12 11 16 16 Si 1.86807 * 119.99756 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47000 * 89.99808 * 16 14 12 18 18 H 1.48496 * 109.46782 * 209.99856 * 16 14 12 19 19 H 1.48500 * 109.47218 * 329.99816 * 16 14 12 20 20 C 1.48856 * 111.13207 * 175.19370 * 6 5 4 21 21 C 1.38908 * 119.85276 * 0.25223 * 5 4 3 22 22 C 1.38105 * 119.92496 * 359.49376 * 21 5 4 23 23 H 1.09001 * 109.46641 * 90.01036 * 1 2 3 24 24 H 1.08998 * 109.46845 * 210.00374 * 1 2 3 25 25 H 1.08992 * 109.47307 * 330.00788 * 1 2 3 26 26 H 1.08005 * 119.96265 * 359.97438 * 3 2 1 27 27 H 1.08001 * 120.04210 * 180.02562 * 4 3 2 28 28 H 1.09002 * 110.41176 * 40.25927 * 7 6 5 29 29 H 1.09002 * 110.41204 * 277.93834 * 7 6 5 30 30 H 1.08998 * 110.32365 * 94.98307 * 8 7 6 31 31 H 1.09002 * 110.32581 * 217.19029 * 8 7 6 32 32 H 0.96996 * 119.99855 * 93.54349 * 11 9 8 33 33 H 0.97000 * 120.00159 * 180.02562 * 15 14 12 34 34 H 1.09003 * 110.39541 * 82.21267 * 20 6 5 35 35 H 1.09004 * 110.49212 * 319.84395 * 20 6 5 36 36 H 1.08006 * 120.03646 * 179.72474 * 21 5 4 37 37 H 1.07992 * 119.96277 * 180.25328 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1969 1.1985 0.0000 4 6 3.5779 1.2022 0.0005 5 6 4.2740 0.0001 0.0016 6 7 5.6708 0.0002 0.0016 7 6 6.2032 0.6974 1.2006 8 6 7.6460 0.1694 1.3523 9 6 7.6488 -1.1993 0.6409 10 1 8.3543 -1.1927 -0.1899 11 7 7.9892 -2.2642 1.5878 12 6 9.3014 -2.5754 1.8254 13 1 10.0853 -2.0362 1.3145 14 6 9.6239 -3.5840 2.7229 15 7 8.6685 -4.2415 3.3452 16 14 11.4139 -4.0091 3.0465 17 1 11.9226 -3.1851 4.1724 18 1 11.5255 -5.4479 3.3962 19 1 12.2166 -3.7320 1.8282 20 6 6.2075 -1.3833 0.1192 21 6 3.5780 -1.2020 -0.0032 22 6 2.1969 -1.1985 0.0016 23 1 -0.3633 -0.0002 -1.0277 24 1 -0.3633 -0.8899 0.5139 25 1 -0.3633 0.8900 0.5137 26 1 1.6550 2.1328 -0.0004 27 1 4.1161 2.1386 0.0010 28 1 5.6117 0.4455 2.0808 29 1 6.2077 1.7759 1.0424 30 1 8.3500 0.8479 0.8705 31 1 7.8961 0.0488 2.4063 32 1 7.2851 -2.7487 2.0464 33 1 8.8939 -4.9461 3.9726 34 1 6.2154 -1.8718 -0.8552 35 1 5.6172 -1.9625 0.8292 36 1 4.1162 -2.1384 -0.0068 37 1 1.6552 -2.1327 0.0021 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259320111.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:46 Heat of formation + Delta-G solvation = 27.598091 kcal Electronic energy + Delta-G solvation = -17350.387341 eV Core-core repulsion = 14705.904215 eV Total energy + Delta-G solvation = -2644.483125 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.28159 -39.06363 -36.25802 -34.06912 -32.39906 -32.05454 -30.44934 -29.19005 -26.63088 -25.44659 -23.70201 -23.32841 -21.27939 -20.96308 -19.25413 -18.32680 -17.08972 -16.39528 -16.29981 -16.06697 -15.45554 -15.16301 -15.01384 -14.53245 -14.44662 -14.18362 -13.64979 -13.42457 -13.13450 -13.04010 -12.78900 -12.66644 -12.59901 -12.35665 -12.15979 -12.13664 -11.81712 -11.70495 -11.48751 -10.97264 -10.50459 -9.85564 -9.05659 -8.76742 -7.96337 -5.26115 0.41888 0.49070 1.47663 1.48971 1.57565 2.52847 2.69364 3.01846 3.36259 3.66765 3.83876 3.98703 4.03477 4.08078 4.14825 4.21947 4.31942 4.48178 4.53320 4.59830 4.61130 4.82194 4.83735 4.88987 4.90860 4.98629 5.07045 5.20286 5.22179 5.29097 5.41795 5.45089 5.53569 5.73741 5.87500 5.92853 6.25814 6.35811 7.31281 8.04093 8.28342 9.27139 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.043676 B = 0.004508 C = 0.004230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.935692 B = 6209.474295 C = 6618.083800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.120 4.120 3 C -0.101 4.101 4 C -0.140 4.140 5 C 0.077 3.923 6 N -0.466 5.466 7 C 0.052 3.948 8 C -0.140 4.140 9 C 0.167 3.833 10 H 0.056 0.944 11 N -0.732 5.732 12 C -0.241 4.241 13 H 0.077 0.923 14 C -0.073 4.073 15 N -0.970 5.970 16 Si 0.973 3.027 17 H -0.287 1.287 18 H -0.296 1.296 19 H -0.269 1.269 20 C 0.036 3.964 21 C -0.181 4.181 22 C -0.106 4.106 23 H 0.077 0.923 24 H 0.069 0.931 25 H 0.077 0.923 26 H 0.149 0.851 27 H 0.134 0.866 28 H 0.038 0.962 29 H 0.102 0.898 30 H 0.076 0.924 31 H 0.057 0.943 32 H 0.372 0.628 33 H 0.251 0.749 34 H 0.085 0.915 35 H 0.050 0.950 36 H 0.119 0.881 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.474 11.461 -7.142 19.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.120 4.120 3 C -0.120 4.120 4 C -0.160 4.160 5 C -0.020 4.020 6 N -0.182 5.182 7 C -0.073 4.073 8 C -0.181 4.181 9 C 0.058 3.942 10 H 0.074 0.926 11 N -0.372 5.372 12 C -0.373 4.373 13 H 0.095 0.905 14 C -0.266 4.266 15 N -0.621 5.621 16 Si 0.802 3.198 17 H -0.214 1.214 18 H -0.223 1.223 19 H -0.193 1.193 20 C -0.091 4.091 21 C -0.202 4.202 22 C -0.125 4.125 23 H 0.096 0.904 24 H 0.088 0.912 25 H 0.096 0.904 26 H 0.167 0.833 27 H 0.152 0.848 28 H 0.056 0.944 29 H 0.121 0.879 30 H 0.095 0.905 31 H 0.076 0.924 32 H 0.204 0.796 33 H 0.060 0.940 34 H 0.104 0.896 35 H 0.068 0.932 36 H 0.137 0.863 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -14.044 11.727 -7.665 19.837 hybrid contribution 0.697 -1.228 1.177 1.838 sum -13.347 10.499 -6.488 18.178 Atomic orbital electron populations 1.20772 0.89141 1.03478 1.02950 1.20228 0.97633 0.92721 1.01463 1.21215 0.93213 0.98648 0.98892 1.20983 0.94748 0.96526 1.03718 1.19367 0.88752 0.94568 0.99337 1.62616 1.05325 1.12913 1.37345 1.23094 0.94761 0.99876 0.89608 1.23002 0.95851 0.98171 1.01066 1.21092 0.93688 0.87972 0.91452 0.92637 1.42628 1.04583 1.40442 1.49580 1.19620 0.85195 1.13485 1.18996 0.90460 1.25555 1.01444 0.99385 1.00181 1.69818 1.32645 1.26971 1.32654 0.85141 0.79985 0.76536 0.78105 1.21408 1.22280 1.19349 1.23422 0.95292 0.89362 1.01069 1.21501 0.95677 0.97495 1.05494 1.21145 0.93168 0.98850 0.99322 0.90437 0.91232 0.90445 0.83349 0.84772 0.94351 0.87931 0.90491 0.92407 0.79630 0.94008 0.89626 0.93207 0.86282 0.84764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.51 10.01 71.24 0.71 -0.80 16 2 C -0.12 -2.52 5.88 -19.84 -0.12 -2.64 16 3 C -0.10 -2.11 9.69 22.25 0.22 -1.90 16 4 C -0.14 -3.46 9.37 22.40 0.21 -3.25 16 5 C 0.08 2.29 5.48 38.21 0.21 2.50 16 6 N -0.47 -14.77 5.44 -680.54 -3.70 -18.47 16 7 C 0.05 1.58 5.91 86.45 0.51 2.09 16 8 C -0.14 -4.99 6.78 31.49 0.21 -4.77 16 9 C 0.17 6.80 3.70 45.89 0.17 6.97 16 10 H 0.06 2.29 8.11 -2.39 -0.02 2.27 16 11 N -0.73 -37.20 5.09 -318.71 -1.62 -38.82 16 12 C -0.24 -13.38 9.97 84.03 0.84 -12.55 16 13 H 0.08 4.11 7.83 -2.91 -0.02 4.09 16 14 C -0.07 -4.21 5.50 84.86 0.47 -3.74 16 15 N -0.97 -59.49 13.06 21.65 0.28 -59.21 16 16 Si 0.97 46.07 29.55 68.60 2.03 48.10 16 17 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 18 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 19 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 20 C 0.04 1.29 4.96 86.39 0.43 1.72 16 21 C -0.18 -5.30 8.82 22.40 0.20 -5.11 16 22 C -0.11 -2.60 9.69 22.25 0.22 -2.39 16 23 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 24 H 0.07 0.91 8.08 -2.39 -0.02 0.89 16 25 H 0.08 0.88 8.08 -2.39 -0.02 0.86 16 26 H 0.15 2.18 8.06 -2.91 -0.02 2.15 16 27 H 0.13 2.91 7.89 -2.91 -0.02 2.88 16 28 H 0.04 1.24 7.97 -2.39 -0.02 1.22 16 29 H 0.10 2.57 8.02 -2.39 -0.02 2.55 16 30 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 31 H 0.06 2.32 7.95 -2.39 -0.02 2.30 16 32 H 0.37 20.35 7.55 -92.71 -0.70 19.65 16 33 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 34 H 0.09 2.93 8.14 -2.39 -0.02 2.91 16 35 H 0.05 1.89 5.95 -2.39 -0.01 1.87 16 36 H 0.12 3.64 5.82 -2.91 -0.02 3.63 16 37 H 0.13 2.75 8.06 -2.91 -0.02 2.73 16 Total: -1.00 -63.70 302.33 1.61 -62.09 By element: Atomic # 1 Polarization: 29.82 SS G_CDS: 0.35 Total: 30.17 kcal Atomic # 6 Polarization: -28.13 SS G_CDS: 4.27 Total: -23.86 kcal Atomic # 7 Polarization: -111.46 SS G_CDS: -5.04 Total: -116.50 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.10 kcal Total: -63.70 1.61 -62.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259320111.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.684 kcal (2) G-P(sol) polarization free energy of solvation -63.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds