Wall clock time and date at job start Mon Mar 30 2020 03:48:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38279 * 119.92247 * 2 1 4 4 C 1.38105 * 120.07168 * 179.97438 * 3 2 1 5 5 C 1.38910 * 119.92675 * 0.02562 * 4 3 2 6 6 N 1.39676 * 120.07362 * 179.97438 * 5 4 3 7 7 C 1.48556 * 111.00004 * 300.12287 * 6 5 4 8 8 C 1.54379 * 104.59716 * 200.96187 * 7 6 5 9 9 C 1.54265 * 105.05926 * 23.85558 * 8 7 6 10 10 H 1.09003 * 110.32064 * 241.00440 * 9 8 7 11 11 N 1.46490 * 110.32779 * 118.89607 * 9 8 7 12 12 C 1.36935 * 120.00121 * 87.82373 * 11 9 8 13 13 H 1.07997 * 120.00139 * 0.02562 * 12 11 9 14 14 C 1.38816 * 120.00401 * 180.02562 * 12 11 9 15 15 N 1.31624 * 119.99569 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00172 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47055 * 180.02562 * 16 14 12 18 18 H 1.48505 * 109.46653 * 299.99639 * 16 14 12 19 19 H 1.48495 * 109.47483 * 60.00002 * 16 14 12 20 20 C 1.48724 * 111.01110 * 184.61411 * 6 5 4 21 21 C 1.38910 * 119.85077 * 0.25444 * 5 4 3 22 22 C 1.38106 * 119.92334 * 359.48717 * 21 5 4 23 23 H 1.09003 * 109.47050 * 90.00037 * 1 2 3 24 24 H 1.08999 * 109.47405 * 209.99943 * 1 2 3 25 25 H 1.08998 * 109.47198 * 330.00349 * 1 2 3 26 26 H 1.08000 * 119.96524 * 359.95532 * 3 2 1 27 27 H 1.08003 * 120.03679 * 180.02562 * 4 3 2 28 28 H 1.08995 * 110.41108 * 82.18278 * 7 6 5 29 29 H 1.09003 * 110.41034 * 319.74017 * 7 6 5 30 30 H 1.08999 * 110.32853 * 264.96225 * 8 7 6 31 31 H 1.08997 * 110.32688 * 142.74844 * 8 7 6 32 32 H 0.97000 * 120.00577 * 267.82973 * 11 9 8 33 33 H 0.97001 * 119.99885 * 359.97438 * 15 14 12 34 34 H 1.09003 * 110.39248 * 40.24854 * 20 6 5 35 35 H 1.08991 * 110.51145 * 277.75063 * 20 6 5 36 36 H 1.08001 * 120.03857 * 179.72959 * 21 5 4 37 37 H 1.07995 * 119.96614 * 180.25687 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1985 0.0000 4 6 3.5778 1.2021 0.0005 5 6 4.2740 0.0000 0.0005 6 7 5.6707 0.0000 0.0005 7 6 6.2031 0.6961 -1.1991 8 6 7.6450 0.1652 -1.3490 9 6 7.6450 -1.2021 -0.6347 10 1 8.3514 -1.1955 0.1954 11 7 7.9815 -2.2698 -1.5795 12 6 9.2915 -2.6040 -1.7969 13 1 10.0767 -2.0807 -1.2714 14 6 9.6105 -3.6154 -2.6926 15 7 8.6537 -4.2528 -3.3334 16 14 11.3976 -4.0718 -2.9885 17 1 11.4693 -5.1727 -3.9825 18 1 12.1311 -2.8891 -3.5067 19 1 12.0130 -4.5158 -1.7121 20 6 6.2040 -1.3838 -0.1112 21 6 3.5779 -1.2021 -0.0054 22 6 2.1969 -1.1985 -0.0005 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5138 26 1 1.6550 2.1327 -0.0007 27 1 4.1160 2.1384 0.0010 28 1 6.2096 1.7745 -1.0412 29 1 5.6115 0.4433 -2.0790 30 1 8.3500 0.8434 -0.8684 31 1 7.8954 0.0419 -2.4026 32 1 7.2764 -2.7401 -2.0513 33 1 7.7257 -4.0161 -3.1794 34 1 5.6123 -1.9628 -0.8202 35 1 6.2125 -1.8697 0.8644 36 1 4.1161 -2.1385 -0.0098 37 1 1.6550 -2.1327 -0.0009 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259320113.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:48 Heat of formation + Delta-G solvation = 46.095926 kcal Electronic energy + Delta-G solvation = -17393.825415 eV Core-core repulsion = 14750.144416 eV Total energy + Delta-G solvation = -2643.680999 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.18336 -37.92657 -34.80495 -32.72572 -31.13436 -30.71347 -29.16239 -27.51946 -25.50150 -23.46842 -22.59269 -22.19164 -20.22387 -19.61718 -17.44052 -17.16282 -15.69883 -15.29474 -15.09493 -14.68154 -14.01199 -13.88789 -13.67475 -13.64961 -13.24455 -13.12651 -12.48409 -12.27137 -11.88609 -11.60405 -11.59018 -11.28779 -10.98041 -10.85142 -10.69546 -10.61221 -10.09486 -9.97116 -9.43380 -9.19835 -8.95681 -8.89594 -7.70825 -7.09503 -6.13953 -3.14898 1.39136 1.44408 3.50498 3.53820 3.69660 3.71427 4.12627 4.66413 4.80081 4.88421 5.00232 5.04948 5.13246 5.34411 5.41363 5.45182 5.49091 5.55889 5.60823 5.64720 5.69157 5.79609 5.86771 5.98500 6.03974 6.06100 6.21398 6.33425 6.37003 6.41220 6.63479 6.66391 6.86334 6.87406 7.08138 7.44475 7.78991 8.71196 9.17236 10.03690 10.17815 11.34030 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.043781 B = 0.004531 C = 0.004249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.394397 B = 6178.452152 C = 6587.707906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.121 4.121 3 C -0.100 4.100 4 C -0.136 4.136 5 C 0.105 3.895 6 N -0.469 5.469 7 C 0.044 3.956 8 C -0.148 4.148 9 C 0.181 3.819 10 H 0.062 0.938 11 N -0.732 5.732 12 C -0.333 4.333 13 H 0.066 0.934 14 C -0.044 4.044 15 N -0.943 5.943 16 Si 1.080 2.920 17 H -0.285 1.285 18 H -0.295 1.295 19 H -0.295 1.295 20 C 0.023 3.977 21 C -0.165 4.165 22 C -0.096 4.096 23 H 0.065 0.935 24 H 0.062 0.938 25 H 0.062 0.938 26 H 0.120 0.880 27 H 0.122 0.878 28 H 0.076 0.924 29 H 0.047 0.953 30 H 0.061 0.939 31 H 0.079 0.921 32 H 0.366 0.634 33 H 0.254 0.746 34 H 0.059 0.941 35 H 0.083 0.917 36 H 0.130 0.870 37 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.175 10.127 6.565 17.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.122 4.122 3 C -0.119 4.119 4 C -0.156 4.156 5 C 0.006 3.994 6 N -0.184 5.184 7 C -0.081 4.081 8 C -0.189 4.189 9 C 0.070 3.930 10 H 0.080 0.920 11 N -0.374 5.374 12 C -0.464 4.464 13 H 0.084 0.916 14 C -0.241 4.241 15 N -0.588 5.588 16 Si 0.911 3.089 17 H -0.210 1.210 18 H -0.222 1.222 19 H -0.222 1.222 20 C -0.104 4.104 21 C -0.185 4.185 22 C -0.114 4.114 23 H 0.084 0.916 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.138 0.862 27 H 0.140 0.860 28 H 0.095 0.905 29 H 0.066 0.934 30 H 0.080 0.920 31 H 0.098 0.902 32 H 0.200 0.800 33 H 0.065 0.935 34 H 0.077 0.923 35 H 0.101 0.899 36 H 0.148 0.852 37 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -11.709 9.461 6.304 16.320 hybrid contribution -1.473 0.625 0.168 1.609 sum -13.182 10.086 6.471 17.815 Atomic orbital electron populations 1.20711 0.91521 1.02326 1.01924 1.19803 0.95842 0.93208 1.03343 1.20840 0.93653 0.97335 1.00044 1.20765 0.93898 0.96818 1.04127 1.19216 0.89313 0.93562 0.97271 1.62467 1.04313 1.14313 1.37341 1.23142 0.96637 0.98594 0.89732 1.23182 0.93772 0.99217 1.02706 1.20841 0.92247 0.87814 0.92126 0.91996 1.42495 1.05535 1.40220 1.49184 1.20047 0.83916 1.18324 1.24105 0.91597 1.25797 1.06581 0.95510 0.96227 1.70895 0.99985 1.43499 1.44395 0.83238 0.73641 0.76052 0.75978 1.21033 1.22227 1.22198 1.23652 0.97084 0.88228 1.01465 1.21444 0.94645 0.97905 1.04530 1.20887 0.93739 0.97417 0.99376 0.91630 0.91876 0.91925 0.86240 0.85988 0.90532 0.93449 0.91971 0.90247 0.80029 0.93461 0.92294 0.89875 0.85211 0.86257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.93 10.01 36.01 0.36 -0.57 16 2 C -0.12 -1.42 5.88 -104.59 -0.62 -2.03 16 3 C -0.10 -1.18 9.69 -39.62 -0.38 -1.57 16 4 C -0.14 -1.82 9.37 -39.38 -0.37 -2.19 16 5 C 0.10 1.59 5.48 -83.79 -0.46 1.13 16 6 N -0.47 -7.59 5.43 -166.58 -0.90 -8.49 16 7 C 0.04 0.69 5.92 -2.18 -0.01 0.68 16 8 C -0.15 -2.68 6.79 -25.35 -0.17 -2.85 16 9 C 0.18 3.68 3.70 -66.55 -0.25 3.43 16 10 H 0.06 1.31 8.10 -51.93 -0.42 0.88 16 11 N -0.73 -18.20 5.08 -52.09 -0.26 -18.46 16 12 C -0.33 -9.29 9.96 -15.06 -0.15 -9.44 16 13 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 14 C -0.04 -1.26 5.50 -17.43 -0.10 -1.35 16 15 N -0.94 -29.00 13.70 55.49 0.76 -28.24 16 16 Si 1.08 25.77 29.92 -169.99 -5.09 20.69 16 17 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 18 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 19 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 20 C 0.02 0.41 4.98 -2.09 -0.01 0.40 16 21 C -0.16 -2.40 8.82 -39.38 -0.35 -2.75 16 22 C -0.10 -1.22 9.69 -39.61 -0.38 -1.60 16 23 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 24 H 0.06 0.49 8.08 -51.93 -0.42 0.07 16 25 H 0.06 0.47 8.08 -51.93 -0.42 0.05 16 26 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 27 H 0.12 1.48 7.90 -52.48 -0.41 1.07 16 28 H 0.08 1.05 8.03 -51.93 -0.42 0.64 16 29 H 0.05 0.77 7.97 -51.93 -0.41 0.36 16 30 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.08 1.60 7.95 -51.93 -0.41 1.19 16 32 H 0.37 9.39 6.39 -40.82 -0.26 9.13 16 33 H 0.25 7.71 6.77 -40.82 -0.28 7.43 16 34 H 0.06 1.06 5.90 -51.93 -0.31 0.75 16 35 H 0.08 1.41 8.14 -51.93 -0.42 0.98 16 36 H 0.13 1.90 5.79 -52.49 -0.30 1.59 16 37 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 LS Contribution 300.57 15.07 4.53 4.53 Total: -1.00 -30.77 300.57 -9.24 -40.01 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: -5.39 Total: 8.68 kcal Atomic # 6 Polarization: -15.83 SS G_CDS: -2.89 Total: -18.72 kcal Atomic # 7 Polarization: -54.78 SS G_CDS: -0.41 Total: -55.19 kcal Atomic # 14 Polarization: 25.77 SS G_CDS: -5.09 Total: 20.69 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -30.77 -9.24 -40.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259320113.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.106 kcal (2) G-P(sol) polarization free energy of solvation -30.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds