Wall clock time and date at job start Mon Mar 30 2020 03:48:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38279 * 119.92247 * 2 1 4 4 C 1.38105 * 120.07168 * 179.97438 * 3 2 1 5 5 C 1.38910 * 119.92675 * 0.02562 * 4 3 2 6 6 N 1.39676 * 120.07362 * 179.97438 * 5 4 3 7 7 C 1.48556 * 111.00004 * 300.12287 * 6 5 4 8 8 C 1.54379 * 104.59716 * 200.96187 * 7 6 5 9 9 C 1.54265 * 105.05926 * 23.85558 * 8 7 6 10 10 H 1.09003 * 110.32064 * 241.00440 * 9 8 7 11 11 N 1.46490 * 110.32779 * 118.89607 * 9 8 7 12 12 C 1.36935 * 120.00121 * 87.82373 * 11 9 8 13 13 H 1.07997 * 120.00139 * 0.02562 * 12 11 9 14 14 C 1.38816 * 120.00401 * 180.02562 * 12 11 9 15 15 N 1.31624 * 119.99569 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00172 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47055 * 180.02562 * 16 14 12 18 18 H 1.48505 * 109.46653 * 299.99639 * 16 14 12 19 19 H 1.48495 * 109.47483 * 60.00002 * 16 14 12 20 20 C 1.48724 * 111.01110 * 184.61411 * 6 5 4 21 21 C 1.38910 * 119.85077 * 0.25444 * 5 4 3 22 22 C 1.38106 * 119.92334 * 359.48717 * 21 5 4 23 23 H 1.09003 * 109.47050 * 90.00037 * 1 2 3 24 24 H 1.08999 * 109.47405 * 209.99943 * 1 2 3 25 25 H 1.08998 * 109.47198 * 330.00349 * 1 2 3 26 26 H 1.08000 * 119.96524 * 359.95532 * 3 2 1 27 27 H 1.08003 * 120.03679 * 180.02562 * 4 3 2 28 28 H 1.08995 * 110.41108 * 82.18278 * 7 6 5 29 29 H 1.09003 * 110.41034 * 319.74017 * 7 6 5 30 30 H 1.08999 * 110.32853 * 264.96225 * 8 7 6 31 31 H 1.08997 * 110.32688 * 142.74844 * 8 7 6 32 32 H 0.97000 * 120.00577 * 267.82973 * 11 9 8 33 33 H 0.97001 * 119.99885 * 359.97438 * 15 14 12 34 34 H 1.09003 * 110.39248 * 40.24854 * 20 6 5 35 35 H 1.08991 * 110.51145 * 277.75063 * 20 6 5 36 36 H 1.08001 * 120.03857 * 179.72959 * 21 5 4 37 37 H 1.07995 * 119.96614 * 180.25687 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1985 0.0000 4 6 3.5778 1.2021 0.0005 5 6 4.2740 0.0000 0.0005 6 7 5.6707 0.0000 0.0005 7 6 6.2031 0.6961 -1.1991 8 6 7.6450 0.1652 -1.3490 9 6 7.6450 -1.2021 -0.6347 10 1 8.3514 -1.1955 0.1954 11 7 7.9815 -2.2698 -1.5795 12 6 9.2915 -2.6040 -1.7969 13 1 10.0767 -2.0807 -1.2714 14 6 9.6105 -3.6154 -2.6926 15 7 8.6537 -4.2528 -3.3334 16 14 11.3976 -4.0718 -2.9885 17 1 11.4693 -5.1727 -3.9825 18 1 12.1311 -2.8891 -3.5067 19 1 12.0130 -4.5158 -1.7121 20 6 6.2040 -1.3838 -0.1112 21 6 3.5779 -1.2021 -0.0054 22 6 2.1969 -1.1985 -0.0005 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5138 26 1 1.6550 2.1327 -0.0007 27 1 4.1160 2.1384 0.0010 28 1 6.2096 1.7745 -1.0412 29 1 5.6115 0.4433 -2.0790 30 1 8.3500 0.8434 -0.8684 31 1 7.8954 0.0419 -2.4026 32 1 7.2764 -2.7401 -2.0513 33 1 7.7257 -4.0161 -3.1794 34 1 5.6123 -1.9628 -0.8202 35 1 6.2125 -1.8697 0.8644 36 1 4.1161 -2.1385 -0.0098 37 1 1.6550 -2.1327 -0.0009 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259320113.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:47 Heat of formation + Delta-G solvation = 27.379577 kcal Electronic energy + Delta-G solvation = -17394.637017 eV Core-core repulsion = 14750.144416 eV Total energy + Delta-G solvation = -2644.492601 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.36875 -39.15610 -36.56889 -34.20349 -32.34530 -32.08184 -30.48306 -29.08605 -26.60009 -25.45239 -23.81932 -23.38345 -21.34509 -21.13494 -19.47938 -18.41984 -17.06341 -16.79166 -16.21128 -16.04930 -15.68515 -15.21808 -15.08423 -14.78413 -14.48063 -14.22819 -13.61518 -13.51737 -13.21498 -12.91771 -12.80559 -12.66968 -12.51303 -12.41756 -12.17801 -11.89715 -11.86120 -11.60533 -11.29375 -10.97272 -10.56297 -9.90420 -9.17993 -8.82686 -8.41868 -5.36919 0.36701 0.44268 1.58345 1.68160 1.84492 2.59297 2.71210 2.94753 3.36330 3.56393 3.75874 3.80594 3.96265 4.03539 4.09732 4.11480 4.20824 4.41459 4.47480 4.48677 4.53370 4.76725 4.77002 4.79886 4.87376 4.90702 5.00299 5.13375 5.17636 5.21770 5.33831 5.40589 5.58460 5.69487 5.81695 5.87492 6.29854 6.45875 7.04556 7.94044 8.05858 9.09569 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.043781 B = 0.004531 C = 0.004249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.394397 B = 6178.452152 C = 6587.707906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.118 4.118 3 C -0.101 4.101 4 C -0.139 4.139 5 C 0.076 3.924 6 N -0.466 5.466 7 C 0.053 3.947 8 C -0.139 4.139 9 C 0.172 3.828 10 H 0.054 0.946 11 N -0.744 5.744 12 C -0.332 4.332 13 H 0.068 0.932 14 C -0.102 4.102 15 N -0.974 5.974 16 Si 1.128 2.872 17 H -0.293 1.293 18 H -0.277 1.277 19 H -0.277 1.277 20 C 0.036 3.964 21 C -0.182 4.182 22 C -0.106 4.106 23 H 0.075 0.925 24 H 0.071 0.929 25 H 0.079 0.921 26 H 0.150 0.850 27 H 0.135 0.865 28 H 0.105 0.895 29 H 0.039 0.961 30 H 0.076 0.924 31 H 0.055 0.945 32 H 0.358 0.642 33 H 0.242 0.758 34 H 0.049 0.951 35 H 0.085 0.915 36 H 0.118 0.882 37 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.248 11.847 7.320 19.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.119 4.119 3 C -0.119 4.119 4 C -0.159 4.159 5 C -0.022 4.022 6 N -0.182 5.182 7 C -0.072 4.072 8 C -0.180 4.180 9 C 0.062 3.938 10 H 0.072 0.928 11 N -0.386 5.386 12 C -0.463 4.463 13 H 0.086 0.914 14 C -0.293 4.293 15 N -0.622 5.622 16 Si 0.953 3.047 17 H -0.220 1.220 18 H -0.203 1.203 19 H -0.203 1.203 20 C -0.092 4.092 21 C -0.203 4.203 22 C -0.125 4.125 23 H 0.093 0.907 24 H 0.090 0.910 25 H 0.097 0.903 26 H 0.168 0.832 27 H 0.153 0.847 28 H 0.123 0.877 29 H 0.057 0.943 30 H 0.095 0.905 31 H 0.074 0.926 32 H 0.191 0.809 33 H 0.053 0.947 34 H 0.068 0.932 35 H 0.104 0.896 36 H 0.136 0.864 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -12.811 11.233 7.102 18.459 hybrid contribution -1.274 0.155 -0.008 1.283 sum -14.085 11.388 7.094 19.452 Atomic orbital electron populations 1.20779 0.89068 1.03636 1.02893 1.20239 0.97681 0.92693 1.01281 1.21226 0.93181 0.98703 0.98786 1.20990 0.94780 0.96503 1.03608 1.19357 0.88655 0.94627 0.99521 1.62552 1.05460 1.12804 1.37371 1.23099 0.94529 1.00006 0.89610 1.22981 0.96067 0.98087 1.00886 1.21039 0.93726 0.87740 0.91249 0.92823 1.42641 1.04471 1.41410 1.50065 1.20379 0.85235 1.17574 1.23120 0.91380 1.27221 1.09702 0.95966 0.96457 1.71005 0.99848 1.45105 1.46278 0.82623 0.69664 0.76071 0.76362 1.21955 1.20314 1.20316 1.23412 0.95156 0.89531 1.01062 1.21498 0.95717 0.97454 1.05597 1.21149 0.93119 0.98901 0.99294 0.90684 0.91040 0.90257 0.83244 0.84734 0.87727 0.94284 0.90490 0.92608 0.80938 0.94723 0.93249 0.89621 0.86391 0.84722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.49 10.01 71.24 0.71 -0.77 16 2 C -0.12 -2.46 5.88 -19.84 -0.12 -2.58 16 3 C -0.10 -2.07 9.69 22.25 0.22 -1.86 16 4 C -0.14 -3.41 9.37 22.40 0.21 -3.20 16 5 C 0.08 2.24 5.48 38.21 0.21 2.45 16 6 N -0.47 -14.80 5.43 -680.92 -3.70 -18.49 16 7 C 0.05 1.61 5.92 86.45 0.51 2.12 16 8 C -0.14 -5.04 6.79 31.49 0.21 -4.82 16 9 C 0.17 7.10 3.70 45.89 0.17 7.27 16 10 H 0.05 2.29 8.10 -2.39 -0.02 2.27 16 11 N -0.74 -38.03 5.08 -318.70 -1.62 -39.65 16 12 C -0.33 -18.76 9.96 84.03 0.84 -17.92 16 13 H 0.07 3.75 7.83 -2.91 -0.02 3.72 16 14 C -0.10 -5.97 5.50 84.86 0.47 -5.50 16 15 N -0.97 -61.42 13.70 21.65 0.30 -61.13 16 16 Si 1.13 52.05 29.92 68.60 2.05 54.10 16 17 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 18 H -0.28 -11.86 7.11 99.48 0.71 -11.16 16 19 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 20 C 0.04 1.30 4.98 86.42 0.43 1.73 16 21 C -0.18 -5.30 8.82 22.40 0.20 -5.10 16 22 C -0.11 -2.57 9.69 22.25 0.22 -2.36 16 23 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 24 H 0.07 0.89 8.08 -2.39 -0.02 0.87 16 25 H 0.08 0.86 8.08 -2.39 -0.02 0.84 16 26 H 0.15 2.15 8.06 -2.91 -0.02 2.12 16 27 H 0.13 2.89 7.90 -2.91 -0.02 2.87 16 28 H 0.10 2.62 8.03 -2.39 -0.02 2.61 16 29 H 0.04 1.25 7.97 -2.39 -0.02 1.23 16 30 H 0.08 2.52 8.14 -2.39 -0.02 2.51 16 31 H 0.06 2.28 7.95 -2.39 -0.02 2.26 16 32 H 0.36 19.20 6.39 -92.71 -0.59 18.61 16 33 H 0.24 15.28 6.77 -92.71 -0.63 14.65 16 34 H 0.05 1.86 5.90 -2.39 -0.01 1.84 16 35 H 0.09 2.97 8.14 -2.39 -0.02 2.95 16 36 H 0.12 3.59 5.79 -2.91 -0.02 3.58 16 37 H 0.13 2.72 8.06 -2.91 -0.02 2.70 16 Total: -1.00 -66.55 300.57 1.91 -64.64 By element: Atomic # 1 Polarization: 30.48 SS G_CDS: 0.60 Total: 31.08 kcal Atomic # 6 Polarization: -34.82 SS G_CDS: 4.27 Total: -30.55 kcal Atomic # 7 Polarization: -114.25 SS G_CDS: -5.02 Total: -119.27 kcal Atomic # 14 Polarization: 52.05 SS G_CDS: 2.05 Total: 54.10 kcal Total: -66.55 1.91 -64.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259320113.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.018 kcal (2) G-P(sol) polarization free energy of solvation -66.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds