Wall clock time and date at job start Mon Mar 30 2020 03:48:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38124 * 120.03935 * 2 1 4 4 C 1.38262 * 120.07427 * 179.78582 * 3 2 1 5 5 C 1.38308 * 120.15293 * 0.46621 * 4 3 2 6 6 C 1.38083 * 120.07210 * 359.78728 * 5 4 3 7 7 C 1.38892 * 120.03785 * 180.27017 * 2 1 3 8 8 N 1.39670 * 120.07327 * 359.96139 * 7 2 1 9 9 C 1.48531 * 111.00170 * 179.08490 * 8 7 2 10 10 C 1.54937 * 103.22902 * 159.72090 * 9 8 7 11 11 C 1.54598 * 102.92116 * 322.58531 * 10 9 8 12 12 H 1.09004 * 110.39286 * 263.00251 * 11 10 9 13 13 N 1.46496 * 110.31008 * 140.87571 * 11 10 9 14 14 C 1.36935 * 120.00268 * 89.28550 * 13 11 10 15 15 H 1.08001 * 119.99998 * 359.97438 * 14 13 11 16 16 C 1.38810 * 120.00411 * 180.02562 * 14 13 11 17 17 N 1.31609 * 120.00324 * 179.97438 * 16 14 13 18 18 Si 1.86803 * 119.99674 * 359.97438 * 16 14 13 19 19 H 1.48503 * 109.46866 * 90.00184 * 18 16 14 20 20 H 1.48495 * 109.47076 * 210.00403 * 18 16 14 21 21 H 1.48502 * 109.47194 * 330.00745 * 18 16 14 22 22 C 1.47903 * 110.99833 * 296.48036 * 8 7 2 23 23 H 1.08992 * 109.47407 * 264.60690 * 1 2 3 24 24 H 1.08996 * 109.47184 * 144.60477 * 1 2 3 25 25 H 1.09008 * 109.46948 * 24.60681 * 1 2 3 26 26 H 1.07997 * 119.96307 * 0.02562 * 3 2 1 27 27 H 1.08006 * 119.92534 * 180.23020 * 4 3 2 28 28 H 1.07996 * 119.96410 * 179.76597 * 5 4 3 29 29 H 1.08001 * 120.03941 * 179.97438 * 6 5 4 30 30 H 1.09005 * 110.66675 * 278.15637 * 9 8 7 31 31 H 1.09001 * 110.66821 * 41.28691 * 9 8 7 32 32 H 1.09005 * 110.72191 * 204.23198 * 10 9 8 33 33 H 1.08994 * 110.88069 * 81.01675 * 10 9 8 34 34 H 0.97001 * 119.99774 * 269.28485 * 13 11 10 35 35 H 0.97004 * 120.00132 * 179.97438 * 17 16 14 36 36 H 1.09000 * 109.92052 * 333.50897 * 22 8 7 37 37 H 1.08998 * 109.91807 * 94.60797 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1957 0.0000 4 6 3.5810 1.1966 0.0045 5 6 4.2765 0.0011 -0.0008 6 6 3.5916 -1.1979 -0.0061 7 6 2.2022 -1.2024 -0.0057 8 7 1.5062 -2.4133 -0.0106 9 6 2.4430 -3.5656 -0.0383 10 6 1.5764 -4.7396 0.4826 11 6 0.7089 -4.0714 1.5739 12 1 1.1481 -4.2308 2.5587 13 7 -0.6558 -4.6025 1.5346 14 6 -0.9810 -5.7100 2.2713 15 1 -0.2312 -6.1923 2.8811 16 6 -2.2739 -6.2136 2.2337 17 7 -2.5863 -7.2784 2.9414 18 14 -3.5706 -5.3800 1.1786 19 1 -3.5633 -5.9794 -0.1801 20 1 -4.9078 -5.5693 1.7960 21 1 -3.2713 -3.9288 1.0809 22 6 0.7090 -2.5714 1.2252 23 1 -0.3634 -0.0966 1.0230 24 1 -0.3633 -0.8377 -0.5952 25 1 -0.3633 0.9344 -0.4279 26 1 1.6585 2.1310 0.0004 27 1 4.1193 2.1329 0.0082 28 1 5.3565 0.0053 -0.0011 29 1 4.1352 -2.1311 -0.0106 30 1 2.7833 -3.7603 -1.0554 31 1 3.2900 -3.3889 0.6247 32 1 2.2035 -5.5206 0.9129 33 1 0.9511 -5.1439 -0.3134 34 1 -1.3291 -4.1696 0.9867 35 1 -3.4900 -7.6301 2.9154 36 1 1.1635 -2.0018 2.0358 37 1 -0.3110 -2.2266 1.0557 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259444840.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:51 Heat of formation + Delta-G solvation = 54.011862 kcal Electronic energy + Delta-G solvation = -17756.425033 eV Core-core repulsion = 15113.087295 eV Total energy + Delta-G solvation = -2643.337738 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.37739 -37.76778 -34.53193 -32.92711 -31.94042 -30.33562 -28.69836 -27.82742 -26.33503 -23.14246 -23.03339 -21.13987 -20.50948 -19.78045 -17.74136 -17.09952 -15.76284 -15.48833 -15.18896 -14.49768 -14.27686 -13.91190 -13.55330 -13.21883 -12.92283 -12.77445 -12.48555 -12.40926 -12.01258 -11.75288 -11.59928 -11.26919 -11.13598 -10.97660 -10.85445 -10.49137 -10.47059 -10.02737 -9.61786 -9.43977 -8.95257 -8.74047 -7.76727 -7.30563 -5.79706 -3.15904 1.38786 1.39708 3.37113 3.40895 3.45087 3.68890 4.11152 4.57387 4.81586 4.88639 4.97732 5.04959 5.12482 5.23860 5.30990 5.45149 5.48026 5.61248 5.66550 5.71180 5.74167 5.79213 5.89648 5.96288 6.03677 6.15138 6.23206 6.31038 6.34396 6.48974 6.55070 6.60881 6.80064 6.85432 7.12838 7.44820 7.95916 8.39365 9.17269 9.89780 10.09506 11.38433 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.036789 B = 0.005622 C = 0.005090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.917857 B = 4979.233995 C = 5499.337011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.100 4.100 3 C -0.102 4.102 4 C -0.148 4.148 5 C -0.105 4.105 6 C -0.169 4.169 7 C 0.108 3.892 8 N -0.471 5.471 9 C 0.030 3.970 10 C -0.143 4.143 11 C 0.176 3.824 12 H 0.065 0.935 13 N -0.741 5.741 14 C -0.247 4.247 15 H 0.090 0.910 16 C 0.007 3.993 17 N -0.933 5.933 18 Si 0.884 3.116 19 H -0.283 1.283 20 H -0.291 1.291 21 H -0.276 1.276 22 C 0.033 3.967 23 H 0.067 0.933 24 H 0.077 0.923 25 H 0.059 0.941 26 H 0.120 0.880 27 H 0.117 0.883 28 H 0.118 0.882 29 H 0.129 0.871 30 H 0.080 0.920 31 H 0.055 0.945 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.363 0.637 35 H 0.260 0.740 36 H 0.050 0.950 37 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.767 15.572 -6.494 20.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.102 4.102 3 C -0.121 4.121 4 C -0.167 4.167 5 C -0.123 4.123 6 C -0.190 4.190 7 C 0.010 3.990 8 N -0.186 5.186 9 C -0.097 4.097 10 C -0.184 4.184 11 C 0.065 3.935 12 H 0.083 0.917 13 N -0.383 5.383 14 C -0.377 4.377 15 H 0.108 0.892 16 C -0.189 4.189 17 N -0.580 5.580 18 Si 0.714 3.286 19 H -0.210 1.210 20 H -0.217 1.217 21 H -0.203 1.203 22 C -0.093 4.093 23 H 0.086 0.914 24 H 0.095 0.905 25 H 0.078 0.922 26 H 0.138 0.862 27 H 0.135 0.865 28 H 0.136 0.864 29 H 0.147 0.853 30 H 0.098 0.902 31 H 0.073 0.927 32 H 0.087 0.913 33 H 0.097 0.903 34 H 0.197 0.803 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 11.345 15.297 -6.758 20.208 hybrid contribution -0.426 0.531 -0.200 0.709 sum 10.919 15.827 -6.958 20.449 Atomic orbital electron populations 1.20824 0.90960 1.02727 1.02411 1.19620 0.96242 0.91595 1.02713 1.20905 0.94164 0.97013 1.00013 1.20998 0.94232 0.97810 1.03661 1.20949 0.99435 0.92300 0.99656 1.21415 0.93518 0.98885 1.05159 1.19053 0.91457 0.90799 0.97678 1.61754 1.20959 1.00246 1.35644 1.23445 0.94540 0.90441 1.01265 1.23286 0.98323 0.96300 1.00520 1.21014 0.86899 0.88904 0.96698 0.91671 1.42811 1.06169 1.33757 1.55591 1.19073 0.96139 1.02173 1.20299 0.89191 1.24657 0.97088 0.97549 0.99601 1.69697 1.19699 1.24307 1.44327 0.86557 0.82086 0.79300 0.80634 1.21005 1.21740 1.20256 1.23393 0.98756 0.98657 0.88474 0.91386 0.90465 0.92158 0.86231 0.86535 0.86426 0.85332 0.90210 0.92670 0.91313 0.90289 0.80300 0.93005 0.93161 0.89435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.41 8.22 36.00 0.30 -1.11 16 2 C -0.10 -1.33 5.76 -104.42 -0.60 -1.93 16 3 C -0.10 -1.18 9.67 -39.61 -0.38 -1.57 16 4 C -0.15 -1.60 10.04 -39.55 -0.40 -2.00 16 5 C -0.10 -1.17 10.04 -39.61 -0.40 -1.56 16 6 C -0.17 -2.14 8.88 -39.38 -0.35 -2.49 16 7 C 0.11 1.54 5.28 -83.79 -0.44 1.10 16 8 N -0.47 -7.18 4.70 -167.16 -0.79 -7.97 16 9 C 0.03 0.42 5.46 -1.90 -0.01 0.41 16 10 C -0.14 -2.42 6.78 -24.87 -0.17 -2.59 16 11 C 0.18 3.33 3.65 -66.57 -0.24 3.09 16 12 H 0.07 1.27 8.09 -51.93 -0.42 0.85 16 13 N -0.74 -17.26 4.91 -52.11 -0.26 -17.51 16 14 C -0.25 -6.86 10.44 -15.06 -0.16 -7.02 16 15 H 0.09 2.67 8.06 -52.49 -0.42 2.25 16 16 C 0.01 0.20 5.50 -17.44 -0.10 0.11 16 17 N -0.93 -29.09 13.97 55.49 0.78 -28.31 16 18 Si 0.88 22.01 27.74 -169.99 -4.71 17.30 16 19 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 20 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 21 H -0.28 -6.47 6.52 56.52 0.37 -6.10 16 22 C 0.03 0.54 5.08 -2.75 -0.01 0.53 16 23 H 0.07 0.84 7.51 -51.93 -0.39 0.45 16 24 H 0.08 1.07 7.19 -51.93 -0.37 0.69 16 25 H 0.06 0.63 8.05 -51.92 -0.42 0.21 16 26 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 27 H 0.12 0.98 8.06 -52.48 -0.42 0.55 16 28 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 29 H 0.13 1.47 5.64 -52.49 -0.30 1.17 16 30 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.06 0.71 6.09 -51.93 -0.32 0.39 16 32 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.08 1.47 8.06 -51.93 -0.42 1.05 16 34 H 0.36 8.41 5.42 -40.82 -0.22 8.19 16 35 H 0.26 7.72 8.31 -40.82 -0.34 7.39 16 36 H 0.05 0.79 7.76 -51.93 -0.40 0.39 16 37 H 0.09 1.48 6.01 -51.93 -0.31 1.17 16 LS Contribution 293.47 15.07 4.42 4.42 Total: -1.00 -30.62 293.47 -8.80 -39.42 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: -5.27 Total: 7.68 kcal Atomic # 6 Polarization: -12.06 SS G_CDS: -2.96 Total: -15.02 kcal Atomic # 7 Polarization: -53.53 SS G_CDS: -0.27 Total: -53.79 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.71 Total: 17.30 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -30.62 -8.80 -39.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259444840.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.427 kcal (2) G-P(sol) polarization free energy of solvation -30.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds