Wall clock time and date at job start Mon Mar 30 2020 03:48:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38124 * 120.03935 * 2 1 4 4 C 1.38262 * 120.07427 * 179.78582 * 3 2 1 5 5 C 1.38308 * 120.15293 * 0.46621 * 4 3 2 6 6 C 1.38083 * 120.07210 * 359.78728 * 5 4 3 7 7 C 1.38892 * 120.03785 * 180.27017 * 2 1 3 8 8 N 1.39670 * 120.07327 * 359.96139 * 7 2 1 9 9 C 1.48531 * 111.00170 * 179.08490 * 8 7 2 10 10 C 1.54937 * 103.22902 * 159.72090 * 9 8 7 11 11 C 1.54598 * 102.92116 * 322.58531 * 10 9 8 12 12 H 1.09004 * 110.39286 * 263.00251 * 11 10 9 13 13 N 1.46496 * 110.31008 * 140.87571 * 11 10 9 14 14 C 1.36935 * 120.00268 * 89.28550 * 13 11 10 15 15 H 1.08001 * 119.99998 * 359.97438 * 14 13 11 16 16 C 1.38810 * 120.00411 * 180.02562 * 14 13 11 17 17 N 1.31609 * 120.00324 * 179.97438 * 16 14 13 18 18 Si 1.86803 * 119.99674 * 359.97438 * 16 14 13 19 19 H 1.48503 * 109.46866 * 90.00184 * 18 16 14 20 20 H 1.48495 * 109.47076 * 210.00403 * 18 16 14 21 21 H 1.48502 * 109.47194 * 330.00745 * 18 16 14 22 22 C 1.47903 * 110.99833 * 296.48036 * 8 7 2 23 23 H 1.08992 * 109.47407 * 264.60690 * 1 2 3 24 24 H 1.08996 * 109.47184 * 144.60477 * 1 2 3 25 25 H 1.09008 * 109.46948 * 24.60681 * 1 2 3 26 26 H 1.07997 * 119.96307 * 0.02562 * 3 2 1 27 27 H 1.08006 * 119.92534 * 180.23020 * 4 3 2 28 28 H 1.07996 * 119.96410 * 179.76597 * 5 4 3 29 29 H 1.08001 * 120.03941 * 179.97438 * 6 5 4 30 30 H 1.09005 * 110.66675 * 278.15637 * 9 8 7 31 31 H 1.09001 * 110.66821 * 41.28691 * 9 8 7 32 32 H 1.09005 * 110.72191 * 204.23198 * 10 9 8 33 33 H 1.08994 * 110.88069 * 81.01675 * 10 9 8 34 34 H 0.97001 * 119.99774 * 269.28485 * 13 11 10 35 35 H 0.97004 * 120.00132 * 179.97438 * 17 16 14 36 36 H 1.09000 * 109.92052 * 333.50897 * 22 8 7 37 37 H 1.08998 * 109.91807 * 94.60797 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1957 0.0000 4 6 3.5810 1.1966 0.0045 5 6 4.2765 0.0011 -0.0008 6 6 3.5916 -1.1979 -0.0061 7 6 2.2022 -1.2024 -0.0057 8 7 1.5062 -2.4133 -0.0106 9 6 2.4430 -3.5656 -0.0383 10 6 1.5764 -4.7396 0.4826 11 6 0.7089 -4.0714 1.5739 12 1 1.1481 -4.2308 2.5587 13 7 -0.6558 -4.6025 1.5346 14 6 -0.9810 -5.7100 2.2713 15 1 -0.2312 -6.1923 2.8811 16 6 -2.2739 -6.2136 2.2337 17 7 -2.5863 -7.2784 2.9414 18 14 -3.5706 -5.3800 1.1786 19 1 -3.5633 -5.9794 -0.1801 20 1 -4.9078 -5.5693 1.7960 21 1 -3.2713 -3.9288 1.0809 22 6 0.7090 -2.5714 1.2252 23 1 -0.3634 -0.0966 1.0230 24 1 -0.3633 -0.8377 -0.5952 25 1 -0.3633 0.9344 -0.4279 26 1 1.6585 2.1310 0.0004 27 1 4.1193 2.1329 0.0082 28 1 5.3565 0.0053 -0.0011 29 1 4.1352 -2.1311 -0.0106 30 1 2.7833 -3.7603 -1.0554 31 1 3.2900 -3.3889 0.6247 32 1 2.2035 -5.5206 0.9129 33 1 0.9511 -5.1439 -0.3134 34 1 -1.3291 -4.1696 0.9867 35 1 -3.4900 -7.6301 2.9154 36 1 1.1635 -2.0018 2.0358 37 1 -0.3110 -2.2266 1.0557 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259444840.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:51 Heat of formation + Delta-G solvation = 35.089003 kcal Electronic energy + Delta-G solvation = -17757.245590 eV Core-core repulsion = 15113.087295 eV Total energy + Delta-G solvation = -2644.158295 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.44774 -38.93514 -36.23192 -33.95864 -33.65640 -31.87382 -29.87763 -29.09592 -27.43407 -24.99466 -24.19519 -22.28106 -21.58196 -21.17399 -19.74358 -18.17610 -17.23599 -16.47539 -16.36450 -16.00232 -15.74308 -15.10162 -14.85474 -14.58058 -14.37324 -14.05511 -13.88269 -13.53477 -13.22297 -13.04875 -13.03129 -12.71374 -12.56318 -12.24591 -12.16531 -11.99279 -11.85125 -11.72902 -11.60145 -11.01253 -10.47047 -9.63433 -9.33695 -8.79717 -8.03248 -5.36974 0.46900 0.50211 1.38306 1.40873 1.47925 2.47878 2.72472 3.05877 3.27595 3.52634 3.69446 3.88192 4.00754 4.06051 4.22277 4.28962 4.32875 4.47046 4.49284 4.58666 4.70344 4.78290 4.78866 4.83623 4.85534 4.94839 5.05234 5.14355 5.23174 5.37897 5.46456 5.60652 5.68010 5.75834 5.88348 6.02316 6.20926 6.42402 7.05999 7.81593 8.01075 9.18160 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.036789 B = 0.005622 C = 0.005090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.917857 B = 4979.233995 C = 5499.337011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.116 4.116 3 C -0.108 4.108 4 C -0.145 4.145 5 C -0.108 4.108 6 C -0.177 4.177 7 C 0.081 3.919 8 N -0.478 5.478 9 C 0.041 3.959 10 C -0.138 4.138 11 C 0.165 3.835 12 H 0.056 0.944 13 N -0.744 5.744 14 C -0.231 4.231 15 H 0.059 0.941 16 C -0.060 4.060 17 N -0.983 5.983 18 Si 0.952 3.048 19 H -0.281 1.281 20 H -0.295 1.295 21 H -0.252 1.252 22 C 0.048 3.952 23 H 0.064 0.936 24 H 0.059 0.941 25 H 0.078 0.922 26 H 0.140 0.860 27 H 0.144 0.856 28 H 0.143 0.857 29 H 0.138 0.862 30 H 0.094 0.906 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.060 0.940 34 H 0.366 0.634 35 H 0.258 0.742 36 H 0.055 0.945 37 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.068 18.327 -7.813 23.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.118 4.118 3 C -0.126 4.126 4 C -0.163 4.163 5 C -0.126 4.126 6 C -0.197 4.197 7 C -0.017 4.017 8 N -0.194 5.194 9 C -0.086 4.086 10 C -0.179 4.179 11 C 0.056 3.944 12 H 0.074 0.926 13 N -0.387 5.387 14 C -0.362 4.362 15 H 0.077 0.923 16 C -0.251 4.251 17 N -0.633 5.633 18 Si 0.779 3.221 19 H -0.207 1.207 20 H -0.222 1.222 21 H -0.177 1.177 22 C -0.078 4.078 23 H 0.082 0.918 24 H 0.078 0.922 25 H 0.097 0.903 26 H 0.158 0.842 27 H 0.162 0.838 28 H 0.161 0.839 29 H 0.155 0.845 30 H 0.112 0.888 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.079 0.921 34 H 0.200 0.800 35 H 0.067 0.933 36 H 0.074 0.926 37 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 12.703 18.105 -8.102 23.554 hybrid contribution -0.660 -0.260 0.244 0.751 sum 12.043 17.845 -7.858 22.917 Atomic orbital electron populations 1.20783 0.90917 1.02964 1.01974 1.19837 0.96591 0.92115 1.03240 1.21211 0.94841 0.97213 0.99359 1.21399 0.94126 0.98963 1.01862 1.21304 1.00862 0.91838 0.98637 1.21608 0.93010 1.00085 1.05037 1.19203 0.92259 0.90425 0.99800 1.61778 1.21581 1.01172 1.34835 1.23407 0.94208 0.88672 1.02316 1.23108 0.98198 0.97434 0.99116 1.21237 0.84996 0.91054 0.97095 0.92603 1.42788 1.08103 1.32717 1.55105 1.19031 0.95322 1.02680 1.19145 0.92319 1.25435 0.99540 0.98549 1.01613 1.69870 1.20141 1.26494 1.46841 0.85455 0.78609 0.79511 0.78484 1.20692 1.22209 1.17692 1.23117 0.99019 0.96160 0.89547 0.91769 0.92212 0.90307 0.84173 0.83782 0.83887 0.84487 0.88771 0.91012 0.91027 0.92077 0.80022 0.93320 0.92641 0.90052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.57 8.22 71.24 0.59 -1.99 16 2 C -0.12 -2.84 5.76 -19.74 -0.11 -2.96 16 3 C -0.11 -2.16 9.67 22.25 0.22 -1.94 16 4 C -0.14 -2.58 10.04 22.29 0.22 -2.35 16 5 C -0.11 -2.02 10.04 22.25 0.22 -1.79 16 6 C -0.18 -4.00 8.88 22.40 0.20 -3.80 16 7 C 0.08 2.13 5.28 38.22 0.20 2.33 16 8 N -0.48 -13.90 4.70 -682.77 -3.21 -17.12 16 9 C 0.04 1.08 5.46 86.65 0.47 1.55 16 10 C -0.14 -4.59 6.78 31.80 0.22 -4.38 16 11 C 0.17 6.26 3.65 45.87 0.17 6.42 16 12 H 0.06 2.20 8.09 -2.38 -0.02 2.18 16 13 N -0.74 -34.73 4.91 -318.78 -1.56 -36.30 16 14 C -0.23 -13.11 10.44 84.03 0.88 -12.23 16 15 H 0.06 3.63 8.06 -2.91 -0.02 3.61 16 16 C -0.06 -3.53 5.50 84.86 0.47 -3.06 16 17 N -0.98 -63.09 13.97 21.65 0.30 -62.79 16 18 Si 0.95 45.83 27.74 68.60 1.90 47.73 16 19 H -0.28 -13.30 7.11 99.48 0.71 -12.60 16 20 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 21 H -0.25 -11.00 6.52 99.48 0.65 -10.35 16 22 C 0.05 1.52 5.08 86.45 0.44 1.96 16 23 H 0.06 1.52 7.51 -2.39 -0.02 1.50 16 24 H 0.06 1.60 7.19 -2.39 -0.02 1.58 16 25 H 0.08 1.49 8.05 -2.38 -0.02 1.47 16 26 H 0.14 2.14 8.06 -2.91 -0.02 2.12 16 27 H 0.14 1.74 8.06 -2.91 -0.02 1.72 16 28 H 0.14 1.89 8.06 -2.91 -0.02 1.87 16 29 H 0.14 2.74 5.64 -2.91 -0.02 2.72 16 30 H 0.09 2.26 8.14 -2.38 -0.02 2.24 16 31 H 0.07 1.67 6.09 -2.39 -0.01 1.66 16 32 H 0.07 2.30 8.14 -2.38 -0.02 2.28 16 33 H 0.06 2.26 8.06 -2.39 -0.02 2.24 16 34 H 0.37 16.64 5.42 -92.71 -0.50 16.14 16 35 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 36 H 0.06 1.69 7.76 -2.39 -0.02 1.67 16 37 H 0.08 2.70 6.01 -2.39 -0.01 2.69 16 Total: -1.00 -66.71 293.47 2.10 -64.61 By element: Atomic # 1 Polarization: 25.60 SS G_CDS: 0.50 Total: 26.10 kcal Atomic # 6 Polarization: -26.41 SS G_CDS: 4.17 Total: -22.23 kcal Atomic # 7 Polarization: -111.73 SS G_CDS: -4.47 Total: -116.20 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 1.90 Total: 47.73 kcal Total: -66.71 2.10 -64.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259444840.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.697 kcal (2) G-P(sol) polarization free energy of solvation -66.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds