Wall clock time and date at job start Mon Mar 30 2020 03:41:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48498 * 109.47174 * 90.00090 * 3 2 1 5 5 H 1.48501 * 109.47062 * 210.00041 * 3 2 1 6 6 H 1.48499 * 109.46981 * 330.00195 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00323 * 359.97438 * 7 2 1 9 9 N 1.36934 * 120.00389 * 180.02562 * 7 2 1 10 10 C 1.46496 * 120.00548 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.50013 * 324.91812 * 10 9 7 12 12 C 1.53126 * 109.50724 * 84.99599 * 10 9 7 13 13 C 1.53114 * 109.16224 * 177.59926 * 12 10 9 14 14 C 1.53040 * 109.27617 * 302.34726 * 13 12 10 15 15 N 1.46842 * 109.52758 * 59.18186 * 14 13 12 16 16 C 1.39669 * 111.00351 * 174.15709 * 15 14 13 17 17 C 1.38903 * 120.07952 * 235.76775 * 16 15 14 18 18 C 1.38103 * 119.92681 * 179.76932 * 17 16 15 19 19 C 1.38284 * 120.07414 * 0.51160 * 18 17 16 20 20 C 1.38288 * 120.15012 * 359.74208 * 19 18 17 21 21 C 1.38102 * 120.07225 * 0.02562 * 20 19 18 22 22 C 1.46848 * 111.19453 * 298.25696 * 15 14 13 23 23 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 24 24 H 0.96999 * 119.99757 * 359.97438 * 9 7 2 25 25 H 1.09006 * 109.51959 * 297.50678 * 12 10 9 26 26 H 1.08997 * 109.51808 * 57.62591 * 12 10 9 27 27 H 1.09004 * 109.50613 * 62.28779 * 13 12 10 28 28 H 1.08997 * 109.50530 * 182.40753 * 13 12 10 29 29 H 1.09005 * 109.45807 * 179.19587 * 14 13 12 30 30 H 1.08995 * 109.46094 * 299.15900 * 14 13 12 31 31 H 1.08004 * 120.03453 * 0.02562 * 17 16 15 32 32 H 1.08004 * 119.96648 * 180.25568 * 18 17 16 33 33 H 1.07995 * 119.92669 * 179.77048 * 19 18 17 34 34 H 1.07994 * 119.96471 * 179.97438 * 20 19 18 35 35 H 1.08006 * 120.03573 * 180.02562 * 21 20 19 36 36 H 1.08997 * 109.46244 * 301.72228 * 22 15 14 37 37 H 1.09006 * 109.46059 * 181.75391 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 1.4001 5 1 3.5478 1.4403 -0.7001 6 1 1.4476 2.6527 -0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4704 -2.1375 0.0014 9 7 3.3797 -1.2021 0.0011 10 6 4.1122 -2.4707 0.0011 11 1 3.5658 -3.2064 0.5912 12 6 4.2595 -2.9762 -1.4368 13 6 5.0774 -4.2705 -1.4333 14 6 6.4387 -4.0061 -0.7860 15 7 6.2439 -3.5254 0.5878 16 6 7.4660 -3.3995 1.2521 17 6 7.6760 -4.0616 2.4550 18 6 8.8873 -3.9387 3.1068 19 6 9.8868 -3.1490 2.5686 20 6 9.6793 -2.4842 1.3739 21 6 8.4721 -2.6066 0.7145 22 6 5.5015 -2.2586 0.6068 23 1 -0.4850 0.8401 0.0004 24 1 3.8646 -0.3620 0.0007 25 1 3.2727 -3.1699 -1.8576 26 1 4.7699 -2.2231 -2.0371 27 1 4.5468 -5.0349 -0.8656 28 1 5.2221 -4.6124 -2.4582 29 1 7.0182 -4.9292 -0.7690 30 1 6.9745 -3.2518 -1.3622 31 1 6.8943 -4.6752 2.8780 32 1 9.0527 -4.4565 4.0401 33 1 10.8318 -3.0516 3.0823 34 1 10.4618 -1.8680 0.9566 35 1 8.3108 -2.0875 -0.2188 36 1 6.0417 -1.5124 0.0241 37 1 5.4002 -1.9124 1.6354 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259453328.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:06 Heat of formation + Delta-G solvation = 45.227072 kcal Electronic energy + Delta-G solvation = -17659.177243 eV Core-core repulsion = 15015.458567 eV Total energy + Delta-G solvation = -2643.718675 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.09735 -37.87821 -34.85360 -32.76472 -31.33311 -30.96319 -29.23238 -28.39608 -24.34000 -23.44294 -22.65169 -21.82630 -20.83169 -19.37662 -17.57159 -17.33993 -15.98038 -15.20523 -14.82189 -14.57416 -14.50645 -13.80948 -13.62020 -13.49881 -13.35128 -13.01298 -12.57616 -12.49471 -12.27547 -11.53865 -11.28989 -11.28034 -10.98709 -10.95820 -10.50831 -10.38711 -10.13661 -9.86597 -9.57561 -8.99225 -8.89665 -8.71693 -8.32255 -7.26724 -5.75927 -3.11667 1.24938 1.35377 3.37635 3.40685 3.45413 3.70230 3.87932 4.59803 4.86770 4.89456 5.03154 5.08294 5.20971 5.32614 5.39150 5.45249 5.53168 5.56388 5.62792 5.68157 5.74950 5.85853 5.97605 6.07865 6.11150 6.21742 6.32740 6.44554 6.45384 6.49763 6.53214 6.80351 6.89541 6.97280 7.16539 7.53834 8.00982 8.43195 9.21194 9.93821 10.13306 11.42456 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.028001 B = 0.005679 C = 0.005170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.728730 B = 4929.543904 C = 5414.625119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.005 3.995 3 Si 0.883 3.117 4 H -0.284 1.284 5 H -0.278 1.278 6 H -0.291 1.291 7 C -0.240 4.240 8 H 0.092 0.908 9 N -0.748 5.748 10 C 0.187 3.813 11 H 0.066 0.934 12 C -0.138 4.138 13 C -0.115 4.115 14 C 0.063 3.937 15 N -0.502 5.502 16 C 0.099 3.901 17 C -0.097 4.097 18 C -0.116 4.116 19 C -0.130 4.130 20 C -0.113 4.113 21 C -0.151 4.151 22 C 0.057 3.943 23 H 0.259 0.741 24 H 0.359 0.641 25 H 0.068 0.932 26 H 0.050 0.950 27 H 0.070 0.930 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.033 0.967 31 H 0.129 0.871 32 H 0.123 0.877 33 H 0.119 0.881 34 H 0.118 0.882 35 H 0.118 0.882 36 H 0.032 0.968 37 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.626 -8.036 1.855 21.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.191 4.191 3 Si 0.713 3.287 4 H -0.211 1.211 5 H -0.205 1.205 6 H -0.217 1.217 7 C -0.370 4.370 8 H 0.109 0.891 9 N -0.390 5.390 10 C 0.077 3.923 11 H 0.084 0.916 12 C -0.178 4.178 13 C -0.153 4.153 14 C -0.064 4.064 15 N -0.224 5.224 16 C 0.005 3.995 17 C -0.116 4.116 18 C -0.135 4.135 19 C -0.148 4.148 20 C -0.132 4.132 21 C -0.171 4.171 22 C -0.070 4.070 23 H 0.069 0.931 24 H 0.192 0.808 25 H 0.087 0.913 26 H 0.069 0.931 27 H 0.088 0.912 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.052 0.948 31 H 0.147 0.853 32 H 0.141 0.859 33 H 0.137 0.863 34 H 0.136 0.864 35 H 0.136 0.864 36 H 0.050 0.950 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 19.045 -8.434 2.099 20.934 hybrid contribution 1.060 1.943 -0.531 2.277 sum 20.105 -6.491 1.568 21.185 Atomic orbital electron populations 1.69700 1.05064 1.25773 1.57666 1.24652 0.95203 0.97102 1.02111 0.86575 0.79177 0.85145 0.77779 1.21082 1.20457 1.21740 1.19063 0.80370 0.94755 1.42789 0.89065 1.42734 1.04084 1.01891 1.90332 1.20142 0.89522 0.89256 0.93336 0.91621 1.22288 1.00003 0.95433 1.00106 1.21590 0.95013 0.99245 0.99492 1.22143 0.97958 0.99195 0.87097 1.59537 1.15899 1.30407 1.16516 1.18937 0.89817 0.96049 0.94658 1.21108 0.97165 0.99108 0.94207 1.21102 0.93406 0.99092 0.99870 1.21127 0.99251 0.98161 0.96299 1.21003 0.96964 0.99633 0.95588 1.21734 0.94720 0.99755 1.00899 1.22486 0.95103 0.87916 1.01500 0.93073 0.80838 0.91291 0.93120 0.91152 0.91966 0.91155 0.94835 0.85264 0.85927 0.86319 0.86388 0.86425 0.94966 0.90514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.45 13.97 55.49 0.78 -28.67 16 2 C 0.00 0.15 5.50 -17.43 -0.10 0.05 16 3 Si 0.88 22.28 27.74 -169.99 -4.71 17.57 16 4 H -0.28 -7.14 7.11 56.52 0.40 -6.73 16 5 H -0.28 -6.64 6.52 56.52 0.37 -6.27 16 6 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 7 C -0.24 -6.78 10.41 -15.06 -0.16 -6.93 16 8 H 0.09 2.76 8.06 -52.48 -0.42 2.33 16 9 N -0.75 -17.84 4.93 -53.35 -0.26 -18.11 16 10 C 0.19 3.68 2.93 -67.85 -0.20 3.48 16 11 H 0.07 1.38 8.08 -51.93 -0.42 0.96 16 12 C -0.14 -2.43 5.58 -26.61 -0.15 -2.58 16 13 C -0.11 -1.61 6.09 -26.65 -0.16 -1.77 16 14 C 0.06 0.84 5.06 -3.83 -0.02 0.82 16 15 N -0.50 -7.42 4.62 -171.15 -0.79 -8.21 16 16 C 0.10 1.35 4.68 -83.79 -0.39 0.96 16 17 C -0.10 -1.20 9.97 -39.38 -0.39 -1.59 16 18 C -0.12 -1.21 10.04 -39.61 -0.40 -1.61 16 19 C -0.13 -1.31 10.04 -39.55 -0.40 -1.71 16 20 C -0.11 -1.22 10.04 -39.61 -0.40 -1.62 16 21 C -0.15 -1.89 8.74 -39.38 -0.34 -2.24 16 22 C 0.06 0.96 4.69 -3.83 -0.02 0.94 16 23 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 24 H 0.36 8.46 5.66 -40.82 -0.23 8.23 16 25 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 26 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 27 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.07 0.86 8.11 -51.93 -0.42 0.44 16 30 H 0.03 0.44 7.15 -51.93 -0.37 0.07 16 31 H 0.13 1.52 8.06 -52.48 -0.42 1.10 16 32 H 0.12 0.99 8.06 -52.48 -0.42 0.56 16 33 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 34 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 35 H 0.12 1.44 7.13 -52.48 -0.37 1.07 16 36 H 0.03 0.54 7.79 -51.93 -0.40 0.14 16 37 H 0.08 1.36 8.11 -51.93 -0.42 0.94 16 LS Contribution 298.96 15.07 4.51 4.51 Total: -1.00 -30.86 298.96 -9.23 -40.09 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -5.62 Total: 6.63 kcal Atomic # 6 Polarization: -10.68 SS G_CDS: -3.12 Total: -13.80 kcal Atomic # 7 Polarization: -54.71 SS G_CDS: -0.28 Total: -54.99 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -4.71 Total: 17.57 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -30.86 -9.23 -40.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259453328.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.314 kcal (2) G-P(sol) polarization free energy of solvation -30.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds