Wall clock time and date at job start Mon Mar 30 2020 03:41:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48498 * 109.47174 * 90.00090 * 3 2 1 5 5 H 1.48501 * 109.47062 * 210.00041 * 3 2 1 6 6 H 1.48499 * 109.46981 * 330.00195 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00323 * 359.97438 * 7 2 1 9 9 N 1.36934 * 120.00389 * 180.02562 * 7 2 1 10 10 C 1.46496 * 120.00548 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.50013 * 324.91812 * 10 9 7 12 12 C 1.53126 * 109.50724 * 84.99599 * 10 9 7 13 13 C 1.53114 * 109.16224 * 177.59926 * 12 10 9 14 14 C 1.53040 * 109.27617 * 302.34726 * 13 12 10 15 15 N 1.46842 * 109.52758 * 59.18186 * 14 13 12 16 16 C 1.39669 * 111.00351 * 174.15709 * 15 14 13 17 17 C 1.38903 * 120.07952 * 235.76775 * 16 15 14 18 18 C 1.38103 * 119.92681 * 179.76932 * 17 16 15 19 19 C 1.38284 * 120.07414 * 0.51160 * 18 17 16 20 20 C 1.38288 * 120.15012 * 359.74208 * 19 18 17 21 21 C 1.38102 * 120.07225 * 0.02562 * 20 19 18 22 22 C 1.46848 * 111.19453 * 298.25696 * 15 14 13 23 23 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 24 24 H 0.96999 * 119.99757 * 359.97438 * 9 7 2 25 25 H 1.09006 * 109.51959 * 297.50678 * 12 10 9 26 26 H 1.08997 * 109.51808 * 57.62591 * 12 10 9 27 27 H 1.09004 * 109.50613 * 62.28779 * 13 12 10 28 28 H 1.08997 * 109.50530 * 182.40753 * 13 12 10 29 29 H 1.09005 * 109.45807 * 179.19587 * 14 13 12 30 30 H 1.08995 * 109.46094 * 299.15900 * 14 13 12 31 31 H 1.08004 * 120.03453 * 0.02562 * 17 16 15 32 32 H 1.08004 * 119.96648 * 180.25568 * 18 17 16 33 33 H 1.07995 * 119.92669 * 179.77048 * 19 18 17 34 34 H 1.07994 * 119.96471 * 179.97438 * 20 19 18 35 35 H 1.08006 * 120.03573 * 180.02562 * 21 20 19 36 36 H 1.08997 * 109.46244 * 301.72228 * 22 15 14 37 37 H 1.09006 * 109.46059 * 181.75391 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 1.4001 5 1 3.5478 1.4403 -0.7001 6 1 1.4476 2.6527 -0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4704 -2.1375 0.0014 9 7 3.3797 -1.2021 0.0011 10 6 4.1122 -2.4707 0.0011 11 1 3.5658 -3.2064 0.5912 12 6 4.2595 -2.9762 -1.4368 13 6 5.0774 -4.2705 -1.4333 14 6 6.4387 -4.0061 -0.7860 15 7 6.2439 -3.5254 0.5878 16 6 7.4660 -3.3995 1.2521 17 6 7.6760 -4.0616 2.4550 18 6 8.8873 -3.9387 3.1068 19 6 9.8868 -3.1490 2.5686 20 6 9.6793 -2.4842 1.3739 21 6 8.4721 -2.6066 0.7145 22 6 5.5015 -2.2586 0.6068 23 1 -0.4850 0.8401 0.0004 24 1 3.8646 -0.3620 0.0007 25 1 3.2727 -3.1699 -1.8576 26 1 4.7699 -2.2231 -2.0371 27 1 4.5468 -5.0349 -0.8656 28 1 5.2221 -4.6124 -2.4582 29 1 7.0182 -4.9292 -0.7690 30 1 6.9745 -3.2518 -1.3622 31 1 6.8943 -4.6752 2.8780 32 1 9.0527 -4.4565 4.0401 33 1 10.8318 -3.0516 3.0823 34 1 10.4618 -1.8680 0.9566 35 1 8.3108 -2.0875 -0.2188 36 1 6.0417 -1.5124 0.0241 37 1 5.4002 -1.9124 1.6354 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259453328.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:06 Heat of formation + Delta-G solvation = 26.073032 kcal Electronic energy + Delta-G solvation = -17660.007824 eV Core-core repulsion = 15015.458567 eV Total energy + Delta-G solvation = -2644.549257 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.15906 -39.02544 -36.50746 -34.29314 -33.16189 -31.80723 -30.57014 -29.74614 -25.75531 -25.12366 -23.58214 -23.13461 -22.04654 -20.84640 -19.57479 -18.35452 -17.00126 -16.58487 -16.19744 -15.97836 -15.68318 -15.45037 -14.87708 -14.68819 -14.65212 -14.44192 -14.12202 -13.71250 -13.44395 -13.03953 -12.93464 -12.50160 -12.38918 -12.12667 -12.11284 -11.87169 -11.81928 -11.65777 -11.31537 -10.94148 -9.83878 -9.65496 -9.41587 -9.34033 -8.03281 -5.37420 0.37376 0.50461 1.35619 1.39162 1.46186 2.46896 2.70630 2.87120 3.27588 3.66149 3.88623 4.00566 4.06382 4.10809 4.13372 4.29184 4.33442 4.37838 4.54095 4.58108 4.64769 4.68940 4.79294 4.84433 4.98971 5.06080 5.14539 5.17311 5.39602 5.47789 5.51702 5.62429 5.63793 5.74071 5.92361 5.98628 6.21111 6.50435 7.05663 7.80702 8.00606 9.18360 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.028001 B = 0.005679 C = 0.005170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.728730 B = 4929.543904 C = 5414.625119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.062 4.062 3 Si 0.954 3.046 4 H -0.278 1.278 5 H -0.254 1.254 6 H -0.294 1.294 7 C -0.227 4.227 8 H 0.056 0.944 9 N -0.751 5.751 10 C 0.182 3.818 11 H 0.044 0.956 12 C -0.131 4.131 13 C -0.106 4.106 14 C 0.065 3.935 15 N -0.507 5.507 16 C 0.074 3.926 17 C -0.111 4.111 18 C -0.116 4.116 19 C -0.127 4.127 20 C -0.116 4.116 21 C -0.162 4.162 22 C 0.072 3.928 23 H 0.258 0.742 24 H 0.364 0.636 25 H 0.043 0.957 26 H 0.052 0.948 27 H 0.066 0.934 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.040 0.960 31 H 0.126 0.874 32 H 0.147 0.853 33 H 0.148 0.852 34 H 0.140 0.860 35 H 0.116 0.884 36 H 0.036 0.964 37 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.184 -7.869 2.045 24.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.634 5.634 2 C -0.253 4.253 3 Si 0.781 3.219 4 H -0.205 1.205 5 H -0.179 1.179 6 H -0.221 1.221 7 C -0.358 4.358 8 H 0.074 0.926 9 N -0.394 5.394 10 C 0.074 3.926 11 H 0.062 0.938 12 C -0.171 4.171 13 C -0.144 4.144 14 C -0.061 4.061 15 N -0.229 5.229 16 C -0.019 4.019 17 C -0.130 4.130 18 C -0.134 4.134 19 C -0.144 4.144 20 C -0.135 4.135 21 C -0.182 4.182 22 C -0.055 4.055 23 H 0.067 0.933 24 H 0.197 0.803 25 H 0.062 0.938 26 H 0.071 0.929 27 H 0.084 0.916 28 H 0.106 0.894 29 H 0.106 0.894 30 H 0.058 0.942 31 H 0.144 0.856 32 H 0.165 0.835 33 H 0.166 0.834 34 H 0.158 0.842 35 H 0.134 0.866 36 H 0.055 0.945 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 22.664 -8.308 2.286 24.247 hybrid contribution -0.003 1.759 -0.539 1.840 sum 22.662 -6.549 1.747 23.654 Atomic orbital electron populations 1.69882 1.07086 1.26664 1.59802 1.25462 0.96075 1.01098 1.02692 0.85430 0.78587 0.79791 0.78084 1.20466 1.17876 1.22090 1.18983 0.82329 0.93441 1.41091 0.92585 1.42707 1.02598 1.03682 1.90410 1.20292 0.90580 0.87035 0.94682 0.93793 1.22123 0.99443 0.97467 0.98034 1.21537 0.94822 0.96889 1.01192 1.22173 0.97423 1.00140 0.86389 1.59456 1.17010 1.28905 1.17487 1.19023 0.89546 0.97862 0.95496 1.21245 0.98172 0.99465 0.94136 1.21417 0.92605 0.98864 1.00504 1.21521 1.00179 0.96858 0.95877 1.21316 0.96784 0.99631 0.95742 1.21791 0.95270 0.99919 1.01180 1.22153 0.93543 0.89372 1.00417 0.93309 0.80338 0.93833 0.92876 0.91551 0.89438 0.89380 0.94190 0.85562 0.83493 0.83412 0.84203 0.86553 0.94543 0.91652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.93 13.97 21.65 0.30 -63.62 16 2 C -0.06 -3.70 5.50 84.86 0.47 -3.24 16 3 Si 0.95 46.21 27.74 68.60 1.90 48.11 16 4 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 5 H -0.25 -11.16 6.52 99.48 0.65 -10.51 16 6 H -0.29 -14.36 7.11 99.48 0.71 -13.65 16 7 C -0.23 -13.24 10.41 84.03 0.87 -12.36 16 8 H 0.06 3.58 8.06 -2.91 -0.02 3.56 16 9 N -0.75 -36.06 4.93 -322.69 -1.59 -37.66 16 10 C 0.18 7.25 2.93 45.05 0.13 7.38 16 11 H 0.04 1.93 8.08 -2.39 -0.02 1.91 16 12 C -0.13 -4.58 5.58 30.67 0.17 -4.41 16 13 C -0.11 -2.83 6.09 30.65 0.19 -2.64 16 14 C 0.06 1.61 5.06 86.33 0.44 2.05 16 15 N -0.51 -14.45 4.62 -695.40 -3.21 -17.66 16 16 C 0.07 1.91 4.68 38.21 0.18 2.09 16 17 C -0.11 -2.56 9.97 22.40 0.22 -2.34 16 18 C -0.12 -2.07 10.04 22.25 0.22 -1.85 16 19 C -0.13 -2.07 10.04 22.29 0.22 -1.85 16 20 C -0.12 -2.14 10.04 22.25 0.22 -1.92 16 21 C -0.16 -3.69 8.74 22.40 0.20 -3.50 16 22 C 0.07 2.41 4.69 86.33 0.40 2.82 16 23 H 0.26 15.94 8.31 -92.71 -0.77 15.17 16 24 H 0.36 16.74 5.66 -92.71 -0.52 16.22 16 25 H 0.04 1.72 8.14 -2.38 -0.02 1.70 16 26 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 27 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 28 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.09 1.92 8.11 -2.38 -0.02 1.90 16 30 H 0.04 0.96 7.15 -2.39 -0.02 0.94 16 31 H 0.13 2.88 8.06 -2.91 -0.02 2.85 16 32 H 0.15 1.85 8.06 -2.91 -0.02 1.83 16 33 H 0.15 1.55 8.06 -2.91 -0.02 1.53 16 34 H 0.14 1.91 8.06 -2.91 -0.02 1.88 16 35 H 0.12 2.61 7.13 -2.91 -0.02 2.59 16 36 H 0.04 1.18 7.79 -2.39 -0.02 1.16 16 37 H 0.06 2.30 8.11 -2.38 -0.02 2.28 16 Total: -1.00 -67.98 298.96 1.80 -66.18 By element: Atomic # 1 Polarization: 23.96 SS G_CDS: 0.46 Total: 24.42 kcal Atomic # 6 Polarization: -23.71 SS G_CDS: 3.94 Total: -19.77 kcal Atomic # 7 Polarization: -114.44 SS G_CDS: -4.50 Total: -118.94 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 1.90 Total: 48.11 kcal Total: -67.98 1.80 -66.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259453328.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.254 kcal (2) G-P(sol) polarization free energy of solvation -67.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.181 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds