Wall clock time and date at job start Mon Mar 30 2020 04:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36940 * 120.00452 * 2 1 4 4 H 1.07997 * 120.00270 * 196.53697 * 3 2 1 5 5 C 1.38813 * 119.99307 * 16.54635 * 3 2 1 6 6 N 1.31620 * 120.00496 * 9.75109 * 5 3 2 7 7 Si 1.86802 * 119.99821 * 189.75140 * 5 3 2 8 8 H 1.48502 * 109.47241 * 89.99671 * 7 5 3 9 9 H 1.48497 * 109.47514 * 210.00109 * 7 5 3 10 10 H 1.48504 * 109.46852 * 329.99903 * 7 5 3 11 11 C 1.46506 * 119.99980 * 179.97438 * 2 1 3 12 12 H 1.08998 * 110.87802 * 182.39292 * 11 2 1 13 13 C 1.55138 * 110.98993 * 58.55199 * 11 2 1 14 14 C 1.54317 * 103.01950 * 206.21900 * 13 11 2 15 15 N 1.47444 * 107.23622 * 22.28029 * 14 13 11 16 16 C 1.39671 * 111.00171 * 123.25575 * 15 14 13 17 17 C 1.38912 * 120.07223 * 34.63606 * 16 15 14 18 18 C 1.38100 * 119.92653 * 180.02562 * 17 16 15 19 19 C 1.38291 * 120.07280 * 359.97438 * 18 17 16 20 20 C 1.38284 * 120.14707 * 359.97438 * 19 18 17 21 21 C 1.38105 * 120.08024 * 0.04747 * 20 19 18 22 22 C 1.47849 * 108.56080 * 0.99274 * 15 14 13 23 23 H 1.09002 * 109.47452 * 274.87885 * 1 2 3 24 24 H 1.09011 * 109.46855 * 34.88027 * 1 2 3 25 25 H 1.09001 * 109.46879 * 154.87234 * 1 2 3 26 26 H 0.96997 * 119.99871 * 180.02562 * 6 5 3 27 27 H 1.08999 * 110.70954 * 87.83372 * 13 11 2 28 28 H 1.09006 * 110.85233 * 324.66975 * 13 11 2 29 29 H 1.09001 * 109.88892 * 262.87293 * 14 13 11 30 30 H 1.09002 * 109.88984 * 141.68760 * 14 13 11 31 31 H 1.08004 * 120.03758 * 0.26846 * 17 16 15 32 32 H 1.07998 * 119.96591 * 179.97438 * 18 17 16 33 33 H 1.08001 * 119.92400 * 180.02562 * 19 18 17 34 34 H 1.08009 * 119.95854 * 180.02562 * 20 19 18 35 35 H 1.07992 * 120.03731 * 179.97438 * 21 20 19 36 36 H 1.09000 * 110.37541 * 94.73769 * 22 15 14 37 37 H 1.09002 * 110.37163 * 217.06978 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1962 1.2052 -0.2662 5 6 1.4987 2.3631 0.3424 6 7 0.2850 2.3205 0.8497 7 14 2.3453 4.0080 0.0831 8 1 2.0283 4.5193 -1.2746 9 1 1.8666 4.9771 1.1013 10 1 3.8142 3.8350 0.2164 11 6 2.1975 -1.2688 0.0006 12 1 3.2729 -1.0964 0.0430 13 6 1.8209 -2.1284 -1.2347 14 6 2.0937 -3.5686 -0.7523 15 7 2.0467 -3.5520 0.7213 16 6 1.1012 -4.4606 1.2023 17 6 0.8855 -5.6595 0.5346 18 6 -0.0504 -6.5556 1.0125 19 6 -0.7721 -6.2606 2.1547 20 6 -0.5590 -5.0685 2.8223 21 6 0.3750 -4.1678 2.3496 22 6 1.7346 -2.1772 1.1668 23 1 -0.3634 0.0874 1.0239 24 1 -0.3633 0.8431 -0.5877 25 1 -0.3633 -0.9304 -0.4364 26 1 -0.1700 3.1432 1.0886 27 1 2.4558 -1.8801 -2.0852 28 1 0.7690 -2.0004 -1.4905 29 1 3.0790 -3.8919 -1.0882 30 1 1.3283 -4.2409 -1.1401 31 1 1.4519 -5.8924 -0.3550 32 1 -0.2189 -7.4877 0.4937 33 1 -1.5031 -6.9632 2.5266 34 1 -1.1241 -4.8414 3.7144 35 1 0.5406 -3.2368 2.8713 36 1 0.6630 -2.0659 1.3322 37 1 2.2865 -1.9384 2.0759 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259466707.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:21:44 Heat of formation + Delta-G solvation = 51.698578 kcal Electronic energy + Delta-G solvation = -17906.586496 eV Core-core repulsion = 15263.148446 eV Total energy + Delta-G solvation = -2643.438050 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.37238 -38.93426 -36.81928 -33.77760 -32.27981 -31.77456 -29.57722 -28.73461 -28.13137 -25.00538 -23.83660 -23.00358 -21.37294 -20.68599 -19.06110 -18.46796 -17.18441 -16.68641 -16.35983 -15.87989 -15.55562 -15.22499 -14.68112 -14.54355 -14.42266 -14.07027 -14.02532 -13.68940 -13.16160 -12.82174 -12.60697 -12.51462 -12.38615 -12.31683 -12.17237 -12.06732 -11.81676 -11.71526 -11.40627 -10.69259 -10.63187 -9.80803 -8.91955 -8.70501 -7.84079 -5.29667 0.51912 0.52561 1.47147 1.47947 1.56948 2.46307 2.72226 3.09879 3.28154 3.58261 3.79839 3.87189 4.10646 4.12984 4.22015 4.31772 4.35201 4.45193 4.59894 4.62876 4.69533 4.75500 4.88100 4.90453 4.95130 5.10120 5.19246 5.26819 5.32026 5.40685 5.55821 5.57498 5.68943 5.70928 5.92463 6.02260 6.28178 6.39753 7.11967 7.83018 8.25390 9.19208 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.040981 B = 0.005404 C = 0.005042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.078686 B = 5179.954720 C = 5552.211807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.186 3.814 2 N -0.605 5.605 3 C -0.263 4.263 4 H 0.077 0.923 5 C -0.056 4.056 6 N -0.944 5.944 7 Si 0.974 3.026 8 H -0.285 1.285 9 H -0.296 1.296 10 H -0.268 1.268 11 C 0.165 3.835 12 H 0.074 0.926 13 C -0.151 4.151 14 C 0.047 3.953 15 N -0.483 5.483 16 C 0.097 3.903 17 C -0.170 4.170 18 C -0.093 4.093 19 C -0.159 4.159 20 C -0.100 4.100 21 C -0.186 4.186 22 C 0.037 3.963 23 H -0.004 1.004 24 H 0.029 0.971 25 H 0.018 0.982 26 H 0.248 0.752 27 H 0.083 0.917 28 H 0.058 0.942 29 H 0.099 0.901 30 H 0.080 0.920 31 H 0.139 0.861 32 H 0.151 0.849 33 H 0.145 0.855 34 H 0.135 0.865 35 H 0.108 0.892 36 H 0.047 0.953 37 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.152 -16.734 -1.334 16.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.327 5.327 3 C -0.393 4.393 4 H 0.095 0.905 5 C -0.250 4.250 6 N -0.592 5.592 7 Si 0.802 3.198 8 H -0.212 1.212 9 H -0.223 1.223 10 H -0.193 1.193 11 C 0.057 3.943 12 H 0.092 0.908 13 C -0.191 4.191 14 C -0.079 4.079 15 N -0.196 5.196 16 C -0.002 4.002 17 C -0.190 4.190 18 C -0.111 4.111 19 C -0.178 4.178 20 C -0.118 4.118 21 C -0.207 4.207 22 C -0.092 4.092 23 H 0.015 0.985 24 H 0.048 0.952 25 H 0.036 0.964 26 H 0.057 0.943 27 H 0.102 0.898 28 H 0.076 0.924 29 H 0.117 0.883 30 H 0.098 0.902 31 H 0.157 0.843 32 H 0.169 0.831 33 H 0.163 0.837 34 H 0.153 0.847 35 H 0.126 0.874 36 H 0.065 0.935 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.308 -16.659 -1.134 16.700 hybrid contribution -0.415 1.605 0.084 1.660 sum -0.107 -15.053 -1.050 15.090 Atomic orbital electron populations 1.20474 0.82625 0.95518 0.97212 1.44078 1.02056 1.01038 1.85499 1.19683 0.95336 0.85523 1.38725 0.90479 1.25735 0.97799 1.01616 0.99843 1.70292 1.14589 1.26550 1.47721 0.85155 0.78282 0.79397 0.76933 1.21219 1.22256 1.19266 1.21582 0.95717 0.84683 0.92357 0.90773 1.23182 1.01685 0.94777 0.99486 1.23098 1.03566 0.96840 0.84347 1.60505 1.42535 1.05602 1.11001 1.19475 0.90352 0.94577 0.95788 1.21133 1.02021 0.94039 1.01821 1.21349 0.94538 0.99322 0.95930 1.21371 1.01915 0.97595 0.96891 1.21254 0.96717 0.93949 0.99908 1.21155 0.99708 1.01055 0.98816 1.23553 0.99449 0.86333 0.99833 0.98536 0.95209 0.96396 0.94302 0.89831 0.92375 0.88331 0.90208 0.84283 0.83115 0.83675 0.84696 0.87409 0.93488 0.91665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 9.51 7.58 127.77 0.97 10.48 16 2 N -0.61 -30.53 2.97 -695.06 -2.06 -32.59 16 3 C -0.26 -14.45 9.71 84.03 0.82 -13.63 16 4 H 0.08 4.07 7.79 -2.91 -0.02 4.05 16 5 C -0.06 -3.13 5.20 84.86 0.44 -2.69 16 6 N -0.94 -56.19 10.18 21.65 0.22 -55.97 16 7 Si 0.97 45.19 29.56 68.60 2.03 47.21 16 8 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 9 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16 10 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 11 C 0.17 6.77 3.53 46.37 0.16 6.93 16 12 H 0.07 3.06 7.92 -2.39 -0.02 3.04 16 13 C -0.15 -5.04 6.48 31.77 0.21 -4.83 16 14 C 0.05 1.30 6.19 86.65 0.54 1.84 16 15 N -0.48 -15.65 5.28 -685.17 -3.61 -19.26 16 16 C 0.10 2.97 5.79 38.21 0.22 3.20 16 17 C -0.17 -4.19 8.59 22.40 0.19 -4.00 16 18 C -0.09 -1.92 10.04 22.25 0.22 -1.70 16 19 C -0.16 -3.36 10.04 22.29 0.22 -3.13 16 20 C -0.10 -2.52 10.04 22.25 0.22 -2.30 16 21 C -0.19 -5.77 8.66 22.40 0.19 -5.58 16 22 C 0.04 1.41 5.01 86.77 0.43 1.84 16 23 H 0.00 -0.21 7.57 -2.39 -0.02 -0.22 16 24 H 0.03 1.65 6.76 -2.38 -0.02 1.63 16 25 H 0.02 0.80 6.34 -2.39 -0.02 0.79 16 26 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 27 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 28 H 0.06 2.07 6.37 -2.38 -0.02 2.06 16 29 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 30 H 0.08 1.97 5.83 -2.39 -0.01 1.96 16 31 H 0.14 2.90 6.68 -2.91 -0.02 2.88 16 32 H 0.15 2.10 8.06 -2.91 -0.02 2.08 16 33 H 0.15 2.18 8.06 -2.91 -0.02 2.16 16 34 H 0.14 2.84 8.06 -2.91 -0.02 2.81 16 35 H 0.11 3.63 6.50 -2.91 -0.02 3.61 16 36 H 0.05 1.95 5.53 -2.39 -0.01 1.94 16 37 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 Total: -1.00 -63.39 290.36 2.47 -60.93 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: 1.05 Total: 13.25 kcal Atomic # 6 Polarization: -18.41 SS G_CDS: 4.84 Total: -13.57 kcal Atomic # 7 Polarization: -102.37 SS G_CDS: -5.46 Total: -107.83 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.21 kcal Total: -63.39 2.47 -60.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259466707.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.628 kcal (2) G-P(sol) polarization free energy of solvation -63.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds