Wall clock time and date at job start Mon Mar 30 2020 04:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36938 * 119.99957 * 2 1 4 4 H 1.08002 * 119.99965 * 156.62314 * 3 2 1 5 5 C 1.38815 * 120.00065 * 336.61369 * 3 2 1 6 6 N 1.31617 * 120.00070 * 331.02586 * 5 3 2 7 7 Si 1.86800 * 119.99911 * 151.02082 * 5 3 2 8 8 H 1.48494 * 109.47185 * 180.02562 * 7 5 3 9 9 H 1.48504 * 109.47158 * 300.00238 * 7 5 3 10 10 H 1.48495 * 109.47133 * 60.00229 * 7 5 3 11 11 C 1.46499 * 120.00185 * 179.97438 * 2 1 3 12 12 H 1.09000 * 110.29027 * 180.70435 * 11 2 1 13 13 C 1.54268 * 110.32065 * 302.83076 * 11 2 1 14 14 C 1.54377 * 105.06127 * 118.89553 * 13 11 2 15 15 N 1.48560 * 104.59468 * 23.85057 * 14 13 11 16 16 C 1.39677 * 111.00044 * 200.96229 * 15 14 13 17 17 C 1.38913 * 120.07043 * 239.59793 * 16 15 14 18 18 C 1.38109 * 119.91862 * 179.76660 * 17 16 15 19 19 C 1.38284 * 120.07578 * 0.50915 * 18 17 16 20 20 C 1.38288 * 120.15102 * 359.74306 * 19 18 17 21 21 C 1.38101 * 120.07216 * 359.97438 * 20 19 18 22 22 C 1.48720 * 104.28904 * 320.57465 * 15 14 13 23 23 H 1.09001 * 109.47066 * 92.71577 * 1 2 3 24 24 H 1.09000 * 109.47494 * 212.71771 * 1 2 3 25 25 H 1.08998 * 109.47352 * 332.72125 * 1 2 3 26 26 H 0.97005 * 120.00266 * 354.19079 * 6 5 3 27 27 H 1.09000 * 110.31782 * 237.79389 * 13 11 2 28 28 H 1.09000 * 110.32561 * 359.89359 * 13 11 2 29 29 H 1.08998 * 110.40907 * 142.62718 * 14 13 11 30 30 H 1.08996 * 110.40923 * 264.95274 * 14 13 11 31 31 H 1.07990 * 120.04064 * 0.02562 * 17 16 15 32 32 H 1.07995 * 119.95931 * 180.25276 * 18 17 16 33 33 H 1.08005 * 119.92609 * 179.72156 * 19 18 17 34 34 H 1.07997 * 119.96257 * 180.02562 * 20 19 18 35 35 H 1.08004 * 120.03687 * 179.97438 * 21 20 19 36 36 H 1.09007 * 110.38847 * 280.64140 * 22 15 14 37 37 H 1.09002 * 110.51124 * 158.14935 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1632 1.2243 0.3711 5 6 1.5411 2.3387 -0.4772 6 7 0.6143 2.2566 -1.4081 7 14 2.0375 4.0065 0.2020 8 1 1.2451 5.0693 -0.4671 9 1 1.7784 4.0428 1.6639 10 1 3.4832 4.2334 -0.0502 11 6 2.1975 -1.2687 0.0006 12 1 3.2718 -1.0849 0.0131 13 6 1.7861 -2.1243 1.2166 14 6 1.1847 -3.4127 0.6154 15 7 1.7901 -3.5127 -0.7375 16 6 1.0208 -4.3277 -1.5712 17 6 1.5773 -5.4686 -2.1355 18 6 0.8124 -6.2748 -2.9555 19 6 -0.5027 -5.9417 -3.2234 20 6 -1.0582 -4.8038 -2.6675 21 6 -0.3007 -3.9964 -1.8420 22 6 1.8119 -2.1111 -1.2343 23 1 -0.3633 -0.0487 -1.0265 24 1 -0.3634 -0.8646 0.5554 25 1 -0.3634 0.9133 0.4710 26 1 0.4158 1.4015 -1.8208 27 1 2.6589 -2.3618 1.8248 28 1 1.0406 -1.5995 1.8140 29 1 1.4586 -4.2778 1.2193 30 1 0.1004 -3.3284 0.5434 31 1 2.6054 -5.7270 -1.9299 32 1 1.2431 -7.1641 -3.3912 33 1 -1.0973 -6.5715 -3.8686 34 1 -2.0857 -4.5468 -2.8784 35 1 -0.7350 -3.1076 -1.4084 36 1 0.8261 -1.8220 -1.5989 37 1 2.5578 -1.9962 -2.0208 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259466711.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:21:47 Heat of formation + Delta-G solvation = 62.715526 kcal Electronic energy + Delta-G solvation = -17971.760342 eV Core-core repulsion = 15328.800023 eV Total energy + Delta-G solvation = -2642.960319 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.00546 -37.80498 -35.22561 -32.19589 -30.86923 -30.18754 -28.28859 -27.39921 -26.04979 -23.13966 -22.40254 -21.96194 -20.36199 -19.14522 -17.57695 -17.15814 -15.82340 -15.53540 -14.70278 -14.46056 -14.08518 -13.72689 -13.42677 -13.32935 -13.16665 -12.78695 -12.40231 -11.88862 -11.81154 -11.39452 -11.16098 -11.06002 -10.89921 -10.68669 -10.62925 -10.58367 -10.02566 -10.00479 -9.47530 -8.87971 -8.54480 -8.39482 -8.30525 -6.96560 -6.08324 -3.21139 1.34982 1.45489 3.50325 3.53811 3.71783 3.79780 4.14631 4.61747 4.98251 4.99971 5.08197 5.17264 5.29759 5.32757 5.47842 5.52904 5.59653 5.62908 5.76175 5.86266 6.03099 6.08320 6.13591 6.31727 6.35715 6.40434 6.44702 6.54512 6.62572 6.65753 6.74467 6.90801 6.91741 7.02231 7.10762 7.63260 7.99328 8.55359 9.10194 9.84320 10.22895 11.19153 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.039417 B = 0.005493 C = 0.005179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.175012 B = 5095.739664 C = 5405.024743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.135 3.865 2 N -0.593 5.593 3 C -0.359 4.359 4 H 0.060 0.940 5 C -0.020 4.020 6 N -0.911 5.911 7 Si 1.061 2.939 8 H -0.286 1.286 9 H -0.294 1.294 10 H -0.293 1.293 11 C 0.177 3.823 12 H 0.075 0.925 13 C -0.140 4.140 14 C 0.042 3.958 15 N -0.483 5.483 16 C 0.091 3.909 17 C -0.101 4.101 18 C -0.118 4.118 19 C -0.132 4.132 20 C -0.112 4.112 21 C -0.149 4.149 22 C 0.020 3.980 23 H 0.008 0.992 24 H 0.014 0.986 25 H 0.052 0.948 26 H 0.269 0.731 27 H 0.065 0.935 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.042 0.958 31 H 0.127 0.873 32 H 0.121 0.879 33 H 0.118 0.882 34 H 0.119 0.881 35 H 0.121 0.879 36 H 0.052 0.948 37 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.354 -14.919 -0.048 14.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.011 4.011 2 N -0.315 5.315 3 C -0.488 4.488 4 H 0.078 0.922 5 C -0.223 4.223 6 N -0.551 5.551 7 Si 0.891 3.109 8 H -0.212 1.212 9 H -0.221 1.221 10 H -0.220 1.220 11 C 0.068 3.932 12 H 0.093 0.907 13 C -0.180 4.180 14 C -0.085 4.085 15 N -0.205 5.205 16 C -0.004 4.004 17 C -0.120 4.120 18 C -0.137 4.137 19 C -0.150 4.150 20 C -0.130 4.130 21 C -0.169 4.169 22 C -0.108 4.108 23 H 0.026 0.974 24 H 0.033 0.967 25 H 0.071 0.929 26 H 0.080 0.920 27 H 0.083 0.917 28 H 0.093 0.907 29 H 0.092 0.908 30 H 0.061 0.939 31 H 0.145 0.855 32 H 0.139 0.861 33 H 0.137 0.863 34 H 0.137 0.863 35 H 0.139 0.861 36 H 0.070 0.930 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.149 -13.458 -0.069 13.507 hybrid contribution -0.510 -1.335 -0.154 1.437 sum -1.659 -14.793 -0.224 14.887 Atomic orbital electron populations 1.20908 0.84237 0.98529 0.97387 1.44065 1.00815 1.01008 1.85579 1.19984 1.00844 0.86792 1.41198 0.92245 1.25778 0.98826 1.01987 0.95721 1.70796 1.35294 1.28339 1.20674 0.83584 0.75435 0.76060 0.75832 1.21179 1.22093 1.21951 1.21088 0.96548 0.85436 0.90147 0.90680 1.22880 1.00826 0.94840 0.99492 1.23134 0.96895 0.98922 0.89500 1.63160 1.45864 1.09636 1.01853 1.19205 0.90724 0.94542 0.95890 1.21016 1.00092 0.93819 0.97024 1.21068 0.94316 0.99609 0.98676 1.21110 0.95652 0.97523 1.00724 1.21023 0.99706 0.94964 0.97333 1.21760 0.95150 1.00265 0.99695 1.23988 1.01279 0.85344 1.00232 0.97411 0.96709 0.92918 0.91998 0.91650 0.90745 0.90826 0.93936 0.85539 0.86057 0.86349 0.86301 0.86125 0.92954 0.90712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 3.18 7.74 59.84 0.46 3.64 16 2 N -0.59 -14.65 2.72 -171.90 -0.47 -15.12 16 3 C -0.36 -9.98 9.42 -15.06 -0.14 -10.12 16 4 H 0.06 1.66 7.95 -52.49 -0.42 1.24 16 5 C -0.02 -0.58 4.63 -17.43 -0.08 -0.66 16 6 N -0.91 -27.30 12.71 55.49 0.71 -26.60 16 7 Si 1.06 25.21 30.01 -169.99 -5.10 20.11 16 8 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 9 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 10 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 11 C 0.18 3.70 3.54 -66.54 -0.24 3.46 16 12 H 0.07 1.63 7.91 -51.93 -0.41 1.22 16 13 C -0.14 -2.47 6.19 -25.35 -0.16 -2.63 16 14 C 0.04 0.66 6.36 -2.18 -0.01 0.65 16 15 N -0.48 -8.14 5.38 -166.58 -0.90 -9.04 16 16 C 0.09 1.42 4.90 -83.79 -0.41 1.01 16 17 C -0.10 -1.38 9.97 -39.38 -0.39 -1.77 16 18 C -0.12 -1.38 10.04 -39.61 -0.40 -1.78 16 19 C -0.13 -1.53 10.04 -39.55 -0.40 -1.93 16 20 C -0.11 -1.44 10.04 -39.61 -0.40 -1.84 16 21 C -0.15 -2.25 8.05 -39.38 -0.32 -2.57 16 22 C 0.02 0.38 5.97 -2.09 -0.01 0.37 16 23 H 0.01 0.19 6.48 -51.93 -0.34 -0.14 16 24 H 0.01 0.30 6.70 -51.93 -0.35 -0.05 16 25 H 0.05 1.35 7.25 -51.93 -0.38 0.98 16 26 H 0.27 8.12 6.31 -40.82 -0.26 7.86 16 27 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.07 1.37 6.84 -51.93 -0.36 1.02 16 29 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.04 0.68 6.78 -51.93 -0.35 0.33 16 31 H 0.13 1.59 8.06 -52.49 -0.42 1.17 16 32 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 33 H 0.12 1.06 8.06 -52.48 -0.42 0.64 16 34 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 35 H 0.12 1.93 6.75 -52.48 -0.35 1.58 16 36 H 0.05 1.09 5.23 -51.92 -0.27 0.81 16 37 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 LS Contribution 293.89 15.07 4.43 4.43 Total: -1.00 -29.89 293.89 -9.06 -38.95 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: -5.24 Total: 1.42 kcal Atomic # 6 Polarization: -11.65 SS G_CDS: -2.49 Total: -14.14 kcal Atomic # 7 Polarization: -50.09 SS G_CDS: -0.66 Total: -50.75 kcal Atomic # 14 Polarization: 25.21 SS G_CDS: -5.10 Total: 20.11 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -29.89 -9.06 -38.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259466711.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.662 kcal (2) G-P(sol) polarization free energy of solvation -29.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds