Wall clock time and date at job start Mon Mar 30 2020 04:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36938 * 119.99957 * 2 1 4 4 H 1.08002 * 119.99965 * 156.62314 * 3 2 1 5 5 C 1.38815 * 120.00065 * 336.61369 * 3 2 1 6 6 N 1.31617 * 120.00070 * 331.02586 * 5 3 2 7 7 Si 1.86800 * 119.99911 * 151.02082 * 5 3 2 8 8 H 1.48494 * 109.47185 * 180.02562 * 7 5 3 9 9 H 1.48504 * 109.47158 * 300.00238 * 7 5 3 10 10 H 1.48495 * 109.47133 * 60.00229 * 7 5 3 11 11 C 1.46499 * 120.00185 * 179.97438 * 2 1 3 12 12 H 1.09000 * 110.29027 * 180.70435 * 11 2 1 13 13 C 1.54268 * 110.32065 * 302.83076 * 11 2 1 14 14 C 1.54377 * 105.06127 * 118.89553 * 13 11 2 15 15 N 1.48560 * 104.59468 * 23.85057 * 14 13 11 16 16 C 1.39677 * 111.00044 * 200.96229 * 15 14 13 17 17 C 1.38913 * 120.07043 * 239.59793 * 16 15 14 18 18 C 1.38109 * 119.91862 * 179.76660 * 17 16 15 19 19 C 1.38284 * 120.07578 * 0.50915 * 18 17 16 20 20 C 1.38288 * 120.15102 * 359.74306 * 19 18 17 21 21 C 1.38101 * 120.07216 * 359.97438 * 20 19 18 22 22 C 1.48720 * 104.28904 * 320.57465 * 15 14 13 23 23 H 1.09001 * 109.47066 * 92.71577 * 1 2 3 24 24 H 1.09000 * 109.47494 * 212.71771 * 1 2 3 25 25 H 1.08998 * 109.47352 * 332.72125 * 1 2 3 26 26 H 0.97005 * 120.00266 * 354.19079 * 6 5 3 27 27 H 1.09000 * 110.31782 * 237.79389 * 13 11 2 28 28 H 1.09000 * 110.32561 * 359.89359 * 13 11 2 29 29 H 1.08998 * 110.40907 * 142.62718 * 14 13 11 30 30 H 1.08996 * 110.40923 * 264.95274 * 14 13 11 31 31 H 1.07990 * 120.04064 * 0.02562 * 17 16 15 32 32 H 1.07995 * 119.95931 * 180.25276 * 18 17 16 33 33 H 1.08005 * 119.92609 * 179.72156 * 19 18 17 34 34 H 1.07997 * 119.96257 * 180.02562 * 20 19 18 35 35 H 1.08004 * 120.03687 * 179.97438 * 21 20 19 36 36 H 1.09007 * 110.38847 * 280.64140 * 22 15 14 37 37 H 1.09002 * 110.51124 * 158.14935 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1632 1.2243 0.3711 5 6 1.5411 2.3387 -0.4772 6 7 0.6143 2.2566 -1.4081 7 14 2.0375 4.0065 0.2020 8 1 1.2451 5.0693 -0.4671 9 1 1.7784 4.0428 1.6639 10 1 3.4832 4.2334 -0.0502 11 6 2.1975 -1.2687 0.0006 12 1 3.2718 -1.0849 0.0131 13 6 1.7861 -2.1243 1.2166 14 6 1.1847 -3.4127 0.6154 15 7 1.7901 -3.5127 -0.7375 16 6 1.0208 -4.3277 -1.5712 17 6 1.5773 -5.4686 -2.1355 18 6 0.8124 -6.2748 -2.9555 19 6 -0.5027 -5.9417 -3.2234 20 6 -1.0582 -4.8038 -2.6675 21 6 -0.3007 -3.9964 -1.8420 22 6 1.8119 -2.1111 -1.2343 23 1 -0.3633 -0.0487 -1.0265 24 1 -0.3634 -0.8646 0.5554 25 1 -0.3634 0.9133 0.4710 26 1 0.4158 1.4015 -1.8208 27 1 2.6589 -2.3618 1.8248 28 1 1.0406 -1.5995 1.8140 29 1 1.4586 -4.2778 1.2193 30 1 0.1004 -3.3284 0.5434 31 1 2.6054 -5.7270 -1.9299 32 1 1.2431 -7.1641 -3.3912 33 1 -1.0973 -6.5715 -3.8686 34 1 -2.0857 -4.5468 -2.8784 35 1 -0.7350 -3.1076 -1.4084 36 1 0.8261 -1.8220 -1.5989 37 1 2.5578 -1.9962 -2.0208 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259466711.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:21:46 Heat of formation + Delta-G solvation = 45.423892 kcal Electronic energy + Delta-G solvation = -17972.510163 eV Core-core repulsion = 15328.800023 eV Total energy + Delta-G solvation = -2643.710141 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.26668 -39.14387 -36.98476 -33.85551 -31.92490 -31.81936 -29.69508 -28.91039 -28.04856 -24.69301 -23.83967 -23.20441 -21.57796 -20.87877 -19.52723 -18.42750 -17.12302 -16.89809 -16.13403 -15.97200 -15.56038 -15.35761 -14.91812 -14.79143 -14.53135 -14.31021 -13.91214 -13.25377 -13.21357 -12.97107 -12.75908 -12.49403 -12.42464 -12.38320 -12.17169 -12.10335 -11.88714 -11.66345 -11.48488 -10.46012 -9.89686 -9.73118 -9.59917 -9.02731 -8.28966 -5.39964 0.30258 0.43958 1.58492 1.65595 1.84806 2.60898 2.77320 2.86217 3.17735 3.54851 3.71749 3.95874 3.97686 4.05122 4.13072 4.23732 4.27847 4.48768 4.51552 4.52661 4.54835 4.66846 4.77322 4.81278 4.82064 4.93773 5.06677 5.10642 5.13875 5.25178 5.44652 5.55520 5.56324 5.57077 5.83794 5.90163 6.34748 6.39970 7.01187 7.75186 8.13944 8.96072 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.039417 B = 0.005493 C = 0.005179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.175012 B = 5095.739664 C = 5405.024743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.152 3.848 2 N -0.607 5.607 3 C -0.365 4.365 4 H 0.055 0.945 5 C -0.071 4.071 6 N -0.939 5.939 7 Si 1.113 2.887 8 H -0.293 1.293 9 H -0.280 1.280 10 H -0.275 1.275 11 C 0.169 3.831 12 H 0.062 0.938 13 C -0.129 4.129 14 C 0.048 3.952 15 N -0.477 5.477 16 C 0.061 3.939 17 C -0.107 4.107 18 C -0.112 4.112 19 C -0.125 4.125 20 C -0.118 4.118 21 C -0.167 4.167 22 C 0.033 3.967 23 H -0.010 1.010 24 H 0.043 0.957 25 H 0.026 0.974 26 H 0.254 0.746 27 H 0.083 0.917 28 H 0.066 0.934 29 H 0.098 0.902 30 H 0.040 0.960 31 H 0.135 0.865 32 H 0.156 0.844 33 H 0.152 0.848 34 H 0.135 0.865 35 H 0.101 0.899 36 H 0.034 0.966 37 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.140 -17.020 0.129 17.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.007 3.993 2 N -0.330 5.330 3 C -0.495 4.495 4 H 0.073 0.927 5 C -0.268 4.268 6 N -0.581 5.581 7 Si 0.937 3.063 8 H -0.219 1.219 9 H -0.206 1.206 10 H -0.201 1.201 11 C 0.061 3.939 12 H 0.080 0.920 13 C -0.169 4.169 14 C -0.078 4.078 15 N -0.198 5.198 16 C -0.033 4.033 17 C -0.126 4.126 18 C -0.130 4.130 19 C -0.142 4.142 20 C -0.137 4.137 21 C -0.187 4.187 22 C -0.096 4.096 23 H 0.008 0.992 24 H 0.062 0.938 25 H 0.045 0.955 26 H 0.064 0.936 27 H 0.101 0.899 28 H 0.085 0.915 29 H 0.117 0.883 30 H 0.058 0.942 31 H 0.153 0.847 32 H 0.173 0.827 33 H 0.170 0.830 34 H 0.153 0.847 35 H 0.119 0.881 36 H 0.052 0.948 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.918 -15.612 0.121 15.639 hybrid contribution -0.575 -0.834 -0.261 1.046 sum -1.492 -16.446 -0.140 16.514 Atomic orbital electron populations 1.20668 0.83896 0.98332 0.96420 1.44231 1.01220 1.01657 1.85889 1.20239 1.00905 0.88215 1.40104 0.92719 1.27131 0.98713 1.05474 0.95498 1.70919 1.37206 1.27450 1.22501 0.82895 0.75869 0.71857 0.75679 1.21899 1.20606 1.20113 1.21236 0.95503 0.84722 0.92452 0.91957 1.22735 1.01393 0.94794 0.97956 1.23138 0.96625 0.98811 0.89254 1.63131 1.46612 1.07722 1.02364 1.19340 0.91057 0.95602 0.97298 1.21220 1.00801 0.93447 0.97154 1.21474 0.94178 1.00019 0.97348 1.21536 0.95924 0.96869 0.99909 1.21297 1.00454 0.95186 0.96764 1.21709 0.95487 1.00410 1.01113 1.23641 0.99653 0.87305 0.99015 0.99185 0.93842 0.95498 0.93607 0.89880 0.91524 0.88345 0.94185 0.84707 0.82678 0.83009 0.84664 0.88123 0.94815 0.92018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.15 7.43 7.74 127.77 0.99 8.42 16 2 N -0.61 -30.78 2.72 -697.77 -1.90 -32.68 16 3 C -0.37 -20.66 9.42 84.03 0.79 -19.87 16 4 H 0.05 3.09 7.95 -2.91 -0.02 3.07 16 5 C -0.07 -4.09 4.63 84.86 0.39 -3.70 16 6 N -0.94 -57.96 12.71 21.65 0.28 -57.68 16 7 Si 1.11 51.31 30.01 68.60 2.06 53.37 16 8 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 9 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 10 H -0.28 -11.83 7.11 99.48 0.71 -11.13 16 11 C 0.17 7.15 3.54 45.89 0.16 7.31 16 12 H 0.06 2.76 7.91 -2.39 -0.02 2.74 16 13 C -0.13 -4.43 6.19 31.49 0.19 -4.24 16 14 C 0.05 1.46 6.36 86.45 0.55 2.01 16 15 N -0.48 -15.82 5.38 -680.92 -3.67 -19.49 16 16 C 0.06 1.87 4.90 38.21 0.19 2.06 16 17 C -0.11 -2.71 9.97 22.40 0.22 -2.49 16 18 C -0.11 -2.22 10.04 22.25 0.22 -2.00 16 19 C -0.12 -2.45 10.04 22.29 0.22 -2.23 16 20 C -0.12 -2.86 10.04 22.25 0.22 -2.63 16 21 C -0.17 -5.03 8.05 22.40 0.18 -4.85 16 22 C 0.03 1.30 5.97 86.42 0.52 1.81 16 23 H -0.01 -0.51 6.48 -2.39 -0.02 -0.53 16 24 H 0.04 1.82 6.70 -2.39 -0.02 1.81 16 25 H 0.03 1.41 7.25 -2.39 -0.02 1.40 16 26 H 0.25 16.02 6.31 -92.70 -0.58 15.44 16 27 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 28 H 0.07 2.40 6.84 -2.39 -0.02 2.38 16 29 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 30 H 0.04 1.25 6.78 -2.39 -0.02 1.23 16 31 H 0.14 3.10 8.06 -2.92 -0.02 3.07 16 32 H 0.16 2.03 8.06 -2.91 -0.02 2.00 16 33 H 0.15 1.98 8.06 -2.91 -0.02 1.96 16 34 H 0.14 2.72 8.06 -2.91 -0.02 2.69 16 35 H 0.10 3.35 6.75 -2.91 -0.02 3.33 16 36 H 0.03 1.46 5.23 -2.38 -0.01 1.45 16 37 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 Total: -1.00 -65.70 293.89 2.85 -62.84 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: 1.23 Total: 14.02 kcal Atomic # 6 Polarization: -25.24 SS G_CDS: 4.86 Total: -20.38 kcal Atomic # 7 Polarization: -104.56 SS G_CDS: -5.29 Total: -109.85 kcal Atomic # 14 Polarization: 51.31 SS G_CDS: 2.06 Total: 53.37 kcal Total: -65.70 2.85 -62.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259466711.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.269 kcal (2) G-P(sol) polarization free energy of solvation -65.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds