Wall clock time and date at job start Mon Mar 30 2020 04:21:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35513 * 117.00022 * 2 1 4 4 O 1.34157 * 126.51312 * 359.96998 * 3 2 1 5 5 N 1.20744 * 113.15550 * 180.02562 * 4 3 2 6 6 C 1.32351 * 111.52006 * 0.02562 * 5 4 3 7 7 C 1.41782 * 127.42647 * 179.97438 * 6 5 4 8 8 H 1.07994 * 119.99845 * 188.01231 * 7 6 5 9 9 C 1.39959 * 119.99957 * 8.01882 * 7 6 5 10 10 N 1.30759 * 119.99861 * 190.57848 * 9 7 6 11 11 Si 1.86802 * 119.99870 * 10.57585 * 9 7 6 12 12 H 1.48496 * 109.47382 * 269.99856 * 11 9 7 13 13 H 1.48508 * 109.47315 * 30.00347 * 11 9 7 14 14 H 1.48501 * 109.47005 * 149.99767 * 11 9 7 15 15 C 1.36016 * 126.51281 * 180.26979 * 3 2 1 16 16 Br 1.89100 * 128.39688 * 0.02562 * 15 3 2 17 17 H 1.09000 * 109.46896 * 300.00371 * 1 2 3 18 18 H 1.08998 * 109.47184 * 60.00308 * 1 2 3 19 19 H 1.08994 * 109.47215 * 180.02562 * 1 2 3 20 20 H 0.96998 * 120.00171 * 354.82320 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2074 0.0000 4 8 1.4459 2.4082 -0.0006 5 7 2.2277 3.3283 -0.0009 6 6 3.4804 2.9009 -0.0012 7 6 4.6594 3.6883 -0.0021 8 1 5.6228 3.2179 -0.1326 9 6 4.5749 5.0752 0.1662 10 7 5.6270 5.8240 -0.0392 11 14 2.9590 5.8564 0.6842 12 1 2.1680 6.2045 -0.5233 13 1 2.1914 4.8982 1.5197 14 1 3.2333 7.0874 1.4682 15 6 3.3856 1.4322 -0.0051 16 35 4.7889 0.1647 -0.0144 17 1 -0.3633 0.5139 0.8900 18 1 -0.3633 0.5138 -0.8900 19 1 -0.3633 -1.0276 0.0005 20 1 6.4838 5.4135 -0.2346 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259536190.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:21:48 Heat of formation + Delta-G solvation = -13.441978 kcal Electronic energy + Delta-G solvation = -11018.541446 eV Core-core repulsion = 8650.200209 eV Total energy + Delta-G solvation = -2368.341238 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 246.963 amu Computer time = 0.07 seconds Orbital eigenvalues (eV) -44.96074 -39.72230 -36.25977 -34.19921 -32.35139 -30.67284 -28.52225 -27.67220 -23.17957 -22.56184 -20.58129 -18.81059 -18.53216 -17.02289 -16.36359 -16.16482 -15.61180 -14.78718 -14.52056 -13.92526 -13.13927 -13.03584 -12.79954 -12.58899 -12.13557 -11.85703 -11.38069 -11.14264 -10.80009 -10.46794 -9.41949 -9.38697 -6.90027 0.72717 0.76428 1.20113 1.43796 1.68046 1.80716 1.92881 2.28553 2.85756 3.02737 3.89765 4.33621 4.35145 4.36227 4.57142 4.74405 5.44090 5.88884 5.97300 6.07907 6.58955 7.91712 8.02010 Molecular weight = 246.96amu Principal moments of inertia in cm(-1) A = 0.026896 B = 0.013033 C = 0.008888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.791626 B = 2147.941333 C = 3149.558911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.266 6.266 3 C 0.200 3.800 4 O 0.026 5.974 5 N -0.494 5.494 6 C 0.191 3.809 7 C -0.499 4.499 8 H 0.077 0.923 9 C 0.026 3.974 10 N -0.829 5.829 11 Si 1.116 2.884 12 H -0.276 1.276 13 H -0.257 1.257 14 H -0.284 1.284 15 C -0.309 4.309 16 Br 0.005 6.995 17 H 0.067 0.933 18 H 0.067 0.933 19 H 0.145 0.855 20 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.799 -11.112 0.725 13.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.177 6.177 3 C 0.090 3.910 4 O -0.013 6.013 5 N -0.243 5.243 6 C 0.047 3.953 7 C -0.538 4.538 8 H 0.096 0.904 9 C -0.191 4.191 10 N -0.455 5.455 11 Si 0.939 3.061 12 H -0.202 1.202 13 H -0.182 1.182 14 H -0.211 1.211 15 C -0.393 4.393 16 Br 0.087 6.913 17 H 0.086 0.914 18 H 0.086 0.914 19 H 0.162 0.838 20 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -7.569 -9.378 0.969 12.090 hybrid contribution 1.301 -1.803 -0.485 2.276 sum -6.267 -11.181 0.484 12.827 Atomic orbital electron populations 1.23553 0.74554 1.06979 1.03194 1.86400 1.25246 1.17313 1.88721 1.21899 0.89512 0.82730 0.96843 1.84493 1.34080 1.09104 1.73643 1.74006 1.00488 1.06683 1.43092 1.21356 0.92367 0.88413 0.93210 1.19932 0.92020 0.93854 1.47963 0.90448 1.28008 1.06845 0.94271 0.90004 1.70603 1.02087 1.39824 1.32996 0.82847 0.70199 0.74341 0.78674 1.20182 1.18189 1.21140 1.22526 0.90794 0.94365 1.31588 1.96318 1.45033 1.51452 1.98469 0.91416 0.91425 0.83760 0.90552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.22 10.79 113.37 1.22 1.45 14 2 O -0.27 -8.71 10.56 -66.06 -0.70 -9.41 14 3 C 0.20 8.34 8.00 67.30 0.54 8.88 14 4 O 0.03 1.15 10.63 92.83 0.99 2.14 14 5 N -0.49 -25.33 7.50 -48.66 -0.37 -25.69 14 6 C 0.19 10.12 6.67 42.29 0.28 10.40 14 7 C -0.50 -27.92 9.89 23.56 0.23 -27.69 14 8 H 0.08 4.42 8.06 -2.91 -0.02 4.40 14 9 C 0.03 1.45 5.52 85.27 0.47 1.92 14 10 N -0.83 -45.85 13.65 21.82 0.30 -45.55 14 11 Si 1.12 53.25 26.49 68.60 1.82 55.07 14 12 H -0.28 -13.04 7.11 99.48 0.71 -12.33 14 13 H -0.26 -12.31 6.22 99.48 0.62 -11.70 14 14 H -0.28 -12.71 7.11 99.48 0.71 -12.00 14 15 C -0.31 -14.40 7.08 24.10 0.17 -14.23 14 16 Br 0.00 0.18 34.13 -20.37 -0.70 -0.51 14 17 H 0.07 1.37 8.14 -2.39 -0.02 1.35 14 18 H 0.07 1.37 8.14 -2.39 -0.02 1.35 14 19 H 0.14 1.87 8.14 -2.39 -0.02 1.86 14 20 H 0.28 15.25 8.73 -92.71 -0.81 14.44 14 Total: -1.00 -61.28 212.54 5.40 -55.87 By element: Atomic # 1 Polarization: -13.78 SS G_CDS: 1.14 Total: -12.64 kcal Atomic # 6 Polarization: -22.19 SS G_CDS: 2.92 Total: -19.27 kcal Atomic # 7 Polarization: -71.18 SS G_CDS: -0.07 Total: -71.24 kcal Atomic # 8 Polarization: -7.56 SS G_CDS: 0.29 Total: -7.27 kcal Atomic # 14 Polarization: 53.25 SS G_CDS: 1.82 Total: 55.07 kcal Atomic # 35 Polarization: 0.18 SS G_CDS: -0.70 Total: -0.51 kcal Total: -61.28 5.40 -55.87 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259536190.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.431 kcal (2) G-P(sol) polarization free energy of solvation -61.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.07 seconds