Wall clock time and date at job start Mon Mar 30 2020 04:13:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46429 * 111.00275 * 2 1 4 4 C 1.53374 * 108.66470 * 179.00441 * 3 2 1 5 5 C 1.53032 * 107.94662 * 291.82576 * 4 3 2 6 6 C 1.50809 * 109.66677 * 47.33277 * 5 4 3 7 7 C 1.38619 * 118.12956 * 164.44138 * 6 5 4 8 8 C 1.38049 * 120.48387 * 179.34644 * 7 6 5 9 9 C 1.50694 * 120.05438 * 180.02562 * 8 7 6 10 10 H 1.09001 * 109.47517 * 20.01903 * 9 8 7 11 11 N 1.46903 * 109.47400 * 140.02336 * 9 8 7 12 12 C 1.50705 * 109.47061 * 260.02077 * 9 8 7 13 13 H 1.07998 * 120.00202 * 0.02562 * 12 9 8 14 14 C 1.37881 * 119.99641 * 179.97438 * 12 9 8 15 15 N 1.31508 * 120.00445 * 0.02562 * 14 12 9 16 16 Si 1.86805 * 119.99711 * 180.02562 * 14 12 9 17 17 H 1.48497 * 109.46986 * 0.02562 * 16 14 12 18 18 H 1.48493 * 109.46949 * 120.00217 * 16 14 12 19 19 H 1.48502 * 109.47056 * 240.00530 * 16 14 12 20 20 C 1.38314 * 119.88883 * 0.02804 * 8 7 6 21 21 C 1.37803 * 119.95526 * 0.12919 * 20 8 7 22 22 C 1.38375 * 122.00446 * 344.07446 * 6 5 4 23 23 H 1.08991 * 109.47628 * 289.32829 * 1 2 3 24 24 H 1.09007 * 109.46931 * 49.32925 * 1 2 3 25 25 H 1.09002 * 109.47146 * 169.32321 * 1 2 3 26 26 H 1.09004 * 109.60775 * 59.24593 * 3 2 1 27 27 H 1.09009 * 109.74336 * 298.84196 * 3 2 1 28 28 H 1.09007 * 109.76454 * 172.21693 * 4 3 2 29 29 H 1.08995 * 109.80583 * 51.46871 * 4 3 2 30 30 H 1.08991 * 109.44286 * 287.26822 * 5 4 3 31 31 H 1.09001 * 109.40468 * 167.36501 * 5 4 3 32 32 H 1.08002 * 119.75485 * 359.34025 * 7 6 5 33 33 H 1.00903 * 110.99418 * 296.04650 * 11 9 8 34 34 H 1.00903 * 110.99996 * 59.99697 * 11 9 8 35 35 H 0.97005 * 120.00183 * 179.97438 * 15 14 12 36 36 H 1.08004 * 120.02296 * 180.11207 * 20 8 7 37 37 H 1.07998 * 119.79217 * 180.02562 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9938 1.3670 0.0000 4 6 3.5260 1.3045 0.0252 5 6 3.9531 0.7529 1.3873 6 6 3.1377 -0.4721 1.7171 7 6 3.5852 -1.3007 2.7343 8 6 2.8695 -2.4277 3.0855 9 6 3.3647 -3.3214 4.1932 10 1 4.0634 -2.7687 4.8212 11 7 2.2263 -3.7710 5.0056 12 6 4.0617 -4.5184 3.5993 13 1 4.1388 -4.6214 2.5270 14 6 4.6019 -5.4814 4.4251 15 7 4.5084 -5.3558 5.7308 16 14 5.4665 -6.9647 3.6890 17 1 5.4369 -6.8700 2.2073 18 1 6.8763 -6.9972 4.1544 19 1 4.7741 -8.2057 4.1201 20 6 1.6973 -2.7353 2.4189 21 6 1.2478 -1.9180 1.4045 22 6 1.9685 -0.7781 1.0432 23 1 -0.3634 0.3401 0.9696 24 1 -0.3633 0.6698 -0.7795 25 1 -0.3633 -1.0099 -0.1904 26 1 1.6347 1.8967 0.8824 27 1 1.6637 1.8882 -0.8987 28 1 3.9380 2.3042 -0.1132 29 1 3.8819 0.6462 -0.7672 30 1 3.7928 1.5122 2.1527 31 1 5.0098 0.4874 1.3554 32 1 4.5006 -1.0628 3.2558 33 1 1.7811 -2.9917 5.4667 34 1 1.5637 -4.2865 4.4457 35 1 4.8882 -6.0336 6.3117 36 1 1.1347 -3.6155 2.6931 37 1 0.3320 -2.1605 0.8860 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259605064.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:09 Heat of formation + Delta-G solvation = 29.520725 kcal Electronic energy + Delta-G solvation = -17812.967030 eV Core-core repulsion = 15168.567276 eV Total energy + Delta-G solvation = -2644.399754 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.19190 -37.07116 -34.22348 -33.87510 -31.45540 -29.65944 -28.91293 -26.93468 -25.90209 -23.84834 -23.16635 -21.25785 -20.94787 -18.56369 -16.67325 -16.40628 -15.76152 -15.36608 -14.56490 -14.28948 -14.15402 -13.92195 -13.72498 -13.26762 -13.03037 -12.72229 -12.40587 -12.17839 -11.84797 -11.70327 -11.49934 -11.05073 -10.94976 -10.76575 -10.74804 -10.52969 -10.07285 -9.91936 -9.39258 -8.91997 -8.38874 -8.14493 -7.23270 -6.90888 -5.83050 -3.97430 1.97616 2.05405 3.35618 3.43754 3.48450 3.86311 4.37497 4.56450 4.79019 4.90377 5.01435 5.11992 5.37096 5.42020 5.45563 5.49690 5.54703 5.60935 5.76177 5.82195 5.93412 5.94637 6.03429 6.20095 6.21025 6.36324 6.39187 6.58402 6.68942 7.11045 7.18566 7.26896 7.36243 7.67934 7.79445 7.96266 8.25557 8.69101 9.06144 9.20862 9.70986 11.21050 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.033308 B = 0.005741 C = 0.005519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.429555 B = 4876.444938 C = 5072.071775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.497 5.497 3 C 0.059 3.941 4 C -0.120 4.120 5 C -0.075 4.075 6 C -0.125 4.125 7 C -0.097 4.097 8 C -0.093 4.093 9 C 0.255 3.745 10 H 0.044 0.956 11 N -0.810 5.810 12 C -0.527 4.527 13 H 0.053 0.947 14 C 0.083 3.917 15 N -0.848 5.848 16 Si 0.882 3.118 17 H -0.274 1.274 18 H -0.285 1.285 19 H -0.284 1.284 20 C -0.097 4.097 21 C -0.161 4.161 22 C 0.094 3.906 23 H 0.035 0.965 24 H 0.068 0.932 25 H 0.076 0.924 26 H 0.040 0.960 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.117 0.883 33 H 0.297 0.703 34 H 0.316 0.684 35 H 0.254 0.746 36 H 0.117 0.883 37 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.103 12.984 -9.381 17.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.212 5.212 3 C -0.068 4.068 4 C -0.158 4.158 5 C -0.113 4.113 6 C -0.128 4.128 7 C -0.117 4.117 8 C -0.097 4.097 9 C 0.146 3.854 10 H 0.062 0.938 11 N -0.335 5.335 12 C -0.566 4.566 13 H 0.072 0.928 14 C -0.124 4.124 15 N -0.483 5.483 16 Si 0.710 3.290 17 H -0.199 1.199 18 H -0.211 1.211 19 H -0.211 1.211 20 C -0.116 4.116 21 C -0.181 4.181 22 C -0.003 4.003 23 H 0.053 0.947 24 H 0.087 0.913 25 H 0.094 0.906 26 H 0.058 0.942 27 H 0.096 0.904 28 H 0.090 0.910 29 H 0.093 0.907 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.135 0.865 33 H 0.107 0.893 34 H 0.129 0.871 35 H 0.064 0.936 36 H 0.135 0.865 37 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -5.398 12.321 -9.238 16.318 hybrid contribution -0.317 -0.069 -0.477 0.577 sum -5.715 12.252 -9.715 16.648 Atomic orbital electron populations 1.22471 0.85884 1.02957 1.00653 1.58255 1.07991 1.12692 1.42299 1.22096 0.95918 0.87918 1.00864 1.21686 0.94539 1.01312 0.98278 1.20467 0.99300 0.94963 0.96526 1.19423 0.96564 0.98483 0.98372 1.20894 0.99520 0.94564 0.96685 1.21615 0.93542 0.95075 0.99439 1.18149 0.89461 0.91816 0.85998 0.93840 1.59225 1.11933 1.26647 1.35706 1.20899 1.37052 1.06199 0.92439 0.92828 1.24954 0.95153 0.97553 0.94708 1.70117 1.42457 1.33569 1.02203 0.86717 0.79377 0.83402 0.79492 1.19889 1.21116 1.21060 1.20779 0.96870 0.98459 0.95535 1.20992 1.00890 0.96058 1.00160 1.18342 0.95530 0.95170 0.91227 0.94681 0.91335 0.90572 0.94169 0.90416 0.91021 0.90717 0.91414 0.90702 0.86539 0.89310 0.87108 0.93578 0.86509 0.86710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 8.81 60.06 0.53 0.83 16 2 N -0.50 -6.99 4.78 -179.13 -0.86 -7.84 16 3 C 0.06 0.68 5.46 -3.89 -0.02 0.66 16 4 C -0.12 -1.39 6.19 -26.52 -0.16 -1.55 16 5 C -0.08 -1.03 5.81 -27.81 -0.16 -1.19 16 6 C -0.13 -2.17 5.74 -104.38 -0.60 -2.77 16 7 C -0.10 -1.92 9.26 -39.51 -0.37 -2.28 16 8 C -0.09 -2.01 4.88 -104.67 -0.51 -2.52 16 9 C 0.26 6.37 2.85 -70.02 -0.20 6.17 16 10 H 0.04 1.19 8.00 -51.93 -0.42 0.78 16 11 N -0.81 -19.13 8.37 -6.65 -0.06 -19.18 16 12 C -0.53 -14.67 8.70 -34.44 -0.30 -14.97 16 13 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 14 C 0.08 2.33 5.39 -17.82 -0.10 2.24 16 15 N -0.85 -24.92 12.77 55.43 0.71 -24.21 16 16 Si 0.88 21.63 29.54 -169.99 -5.02 16.61 16 17 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 18 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 19 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 20 C -0.10 -1.91 9.28 -39.71 -0.37 -2.27 16 21 C -0.16 -2.79 9.03 -39.23 -0.35 -3.14 16 22 C 0.09 1.59 5.82 -83.85 -0.49 1.10 16 23 H 0.03 0.40 8.12 -51.93 -0.42 -0.02 16 24 H 0.07 0.62 8.06 -51.92 -0.42 0.20 16 25 H 0.08 0.84 6.31 -51.93 -0.33 0.51 16 26 H 0.04 0.47 8.11 -51.93 -0.42 0.04 16 27 H 0.08 0.74 8.14 -51.92 -0.42 0.31 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.12 2.22 8.03 -52.49 -0.42 1.80 16 33 H 0.30 6.30 9.06 -39.29 -0.36 5.95 16 34 H 0.32 7.12 7.35 -39.29 -0.29 6.83 16 35 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 36 H 0.12 2.22 6.67 -52.48 -0.35 1.87 16 37 H 0.12 1.72 5.96 -52.49 -0.31 1.41 16 LS Contribution 296.42 15.07 4.47 4.47 Total: -1.00 -30.65 296.42 -9.25 -39.90 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: -5.39 Total: 9.95 kcal Atomic # 6 Polarization: -16.59 SS G_CDS: -3.10 Total: -19.69 kcal Atomic # 7 Polarization: -51.03 SS G_CDS: -0.20 Total: -51.24 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -30.65 -9.25 -39.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259605064.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.421 kcal (2) G-P(sol) polarization free energy of solvation -30.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds