Wall clock time and date at job start Mon Mar 30 2020 04:13:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46429 * 111.00275 * 2 1 4 4 C 1.53374 * 108.66470 * 179.00441 * 3 2 1 5 5 C 1.53032 * 107.94662 * 291.82576 * 4 3 2 6 6 C 1.50809 * 109.66677 * 47.33277 * 5 4 3 7 7 C 1.38619 * 118.12956 * 164.44138 * 6 5 4 8 8 C 1.38049 * 120.48387 * 179.34644 * 7 6 5 9 9 C 1.50694 * 120.05438 * 180.02562 * 8 7 6 10 10 H 1.09001 * 109.47517 * 20.01903 * 9 8 7 11 11 N 1.46903 * 109.47400 * 140.02336 * 9 8 7 12 12 C 1.50705 * 109.47061 * 260.02077 * 9 8 7 13 13 H 1.07998 * 120.00202 * 0.02562 * 12 9 8 14 14 C 1.37881 * 119.99641 * 179.97438 * 12 9 8 15 15 N 1.31508 * 120.00445 * 0.02562 * 14 12 9 16 16 Si 1.86805 * 119.99711 * 180.02562 * 14 12 9 17 17 H 1.48497 * 109.46986 * 0.02562 * 16 14 12 18 18 H 1.48493 * 109.46949 * 120.00217 * 16 14 12 19 19 H 1.48502 * 109.47056 * 240.00530 * 16 14 12 20 20 C 1.38314 * 119.88883 * 0.02804 * 8 7 6 21 21 C 1.37803 * 119.95526 * 0.12919 * 20 8 7 22 22 C 1.38375 * 122.00446 * 344.07446 * 6 5 4 23 23 H 1.08991 * 109.47628 * 289.32829 * 1 2 3 24 24 H 1.09007 * 109.46931 * 49.32925 * 1 2 3 25 25 H 1.09002 * 109.47146 * 169.32321 * 1 2 3 26 26 H 1.09004 * 109.60775 * 59.24593 * 3 2 1 27 27 H 1.09009 * 109.74336 * 298.84196 * 3 2 1 28 28 H 1.09007 * 109.76454 * 172.21693 * 4 3 2 29 29 H 1.08995 * 109.80583 * 51.46871 * 4 3 2 30 30 H 1.08991 * 109.44286 * 287.26822 * 5 4 3 31 31 H 1.09001 * 109.40468 * 167.36501 * 5 4 3 32 32 H 1.08002 * 119.75485 * 359.34025 * 7 6 5 33 33 H 1.00903 * 110.99418 * 296.04650 * 11 9 8 34 34 H 1.00903 * 110.99996 * 59.99697 * 11 9 8 35 35 H 0.97005 * 120.00183 * 179.97438 * 15 14 12 36 36 H 1.08004 * 120.02296 * 180.11207 * 20 8 7 37 37 H 1.07998 * 119.79217 * 180.02562 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9938 1.3670 0.0000 4 6 3.5260 1.3045 0.0252 5 6 3.9531 0.7529 1.3873 6 6 3.1377 -0.4721 1.7171 7 6 3.5852 -1.3007 2.7343 8 6 2.8695 -2.4277 3.0855 9 6 3.3647 -3.3214 4.1932 10 1 4.0634 -2.7687 4.8212 11 7 2.2263 -3.7710 5.0056 12 6 4.0617 -4.5184 3.5993 13 1 4.1388 -4.6214 2.5270 14 6 4.6019 -5.4814 4.4251 15 7 4.5084 -5.3558 5.7308 16 14 5.4665 -6.9647 3.6890 17 1 5.4369 -6.8700 2.2073 18 1 6.8763 -6.9972 4.1544 19 1 4.7741 -8.2057 4.1201 20 6 1.6973 -2.7353 2.4189 21 6 1.2478 -1.9180 1.4045 22 6 1.9685 -0.7781 1.0432 23 1 -0.3634 0.3401 0.9696 24 1 -0.3633 0.6698 -0.7795 25 1 -0.3633 -1.0099 -0.1904 26 1 1.6347 1.8967 0.8824 27 1 1.6637 1.8882 -0.8987 28 1 3.9380 2.3042 -0.1132 29 1 3.8819 0.6462 -0.7672 30 1 3.7928 1.5122 2.1527 31 1 5.0098 0.4874 1.3554 32 1 4.5006 -1.0628 3.2558 33 1 1.7811 -2.9917 5.4667 34 1 1.5637 -4.2865 4.4457 35 1 4.8882 -6.0336 6.3117 36 1 1.1347 -3.6155 2.6931 37 1 0.3320 -2.1605 0.8860 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259605064.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:09 Heat of formation + Delta-G solvation = 9.247635 kcal Electronic energy + Delta-G solvation = -17813.846137 eV Core-core repulsion = 15168.567276 eV Total energy + Delta-G solvation = -2645.278861 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.43576 -38.50054 -35.73246 -35.23613 -33.46300 -30.95419 -30.41469 -27.98873 -27.84224 -25.19936 -24.52333 -22.69571 -22.37057 -19.90479 -18.45977 -17.89919 -17.08164 -16.74076 -16.34936 -15.85886 -15.46838 -15.25392 -15.10728 -14.57742 -14.23917 -14.18520 -13.89834 -13.56238 -13.29472 -12.92712 -12.88610 -12.75310 -12.54650 -12.44856 -12.05154 -11.85665 -11.61853 -11.39067 -11.21829 -10.57322 -10.44774 -9.56753 -8.96083 -8.39467 -7.96744 -6.19578 0.54084 0.61400 1.40437 1.42407 1.53599 2.45436 2.75458 3.02892 3.25055 3.75228 3.91151 3.96269 4.08855 4.28921 4.39598 4.43949 4.50733 4.54187 4.55395 4.63690 4.68174 4.78579 4.90356 4.95590 5.00514 5.07678 5.17249 5.28169 5.32959 5.43935 5.61088 5.75810 5.90575 5.99751 6.18677 6.20423 6.46240 6.66772 7.11037 7.27416 7.52709 9.05220 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.033308 B = 0.005741 C = 0.005519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.429555 B = 4876.444938 C = 5072.071775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.506 5.506 3 C 0.054 3.946 4 C -0.116 4.116 5 C -0.077 4.077 6 C -0.132 4.132 7 C -0.112 4.112 8 C -0.122 4.122 9 C 0.263 3.737 10 H 0.006 0.994 11 N -0.818 5.818 12 C -0.540 4.540 13 H 0.040 0.960 14 C 0.035 3.965 15 N -0.881 5.881 16 Si 0.947 3.053 17 H -0.273 1.273 18 H -0.279 1.279 19 H -0.279 1.279 20 C -0.106 4.106 21 C -0.162 4.162 22 C 0.102 3.898 23 H 0.034 0.966 24 H 0.097 0.903 25 H 0.076 0.924 26 H 0.044 0.956 27 H 0.107 0.893 28 H 0.104 0.896 29 H 0.063 0.937 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.109 0.891 33 H 0.310 0.690 34 H 0.322 0.678 35 H 0.255 0.745 36 H 0.115 0.885 37 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.936 14.413 -11.587 19.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.220 5.220 3 C -0.071 4.071 4 C -0.153 4.153 5 C -0.114 4.114 6 C -0.135 4.135 7 C -0.131 4.131 8 C -0.125 4.125 9 C 0.153 3.847 10 H 0.024 0.976 11 N -0.345 5.345 12 C -0.579 4.579 13 H 0.059 0.941 14 C -0.169 4.169 15 N -0.517 5.517 16 Si 0.773 3.227 17 H -0.198 1.198 18 H -0.205 1.205 19 H -0.205 1.205 20 C -0.125 4.125 21 C -0.183 4.183 22 C 0.003 3.997 23 H 0.053 0.947 24 H 0.116 0.884 25 H 0.095 0.905 26 H 0.063 0.937 27 H 0.125 0.875 28 H 0.122 0.878 29 H 0.082 0.918 30 H 0.099 0.901 31 H 0.093 0.907 32 H 0.127 0.873 33 H 0.121 0.879 34 H 0.135 0.865 35 H 0.065 0.935 36 H 0.133 0.867 37 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -6.244 13.771 -11.464 18.975 hybrid contribution -0.107 -0.395 0.124 0.428 sum -6.351 13.376 -11.339 18.651 Atomic orbital electron populations 1.22587 0.83973 1.03906 1.01725 1.58275 1.09671 1.13907 1.40173 1.22285 0.95750 0.86580 1.02513 1.21703 0.94804 1.02688 0.96149 1.20561 0.98685 0.93718 0.98481 1.19779 0.97165 0.99226 0.97305 1.20949 0.99412 0.94909 0.97876 1.21238 0.95362 0.95990 0.99958 1.17768 0.89164 0.91198 0.86603 0.97583 1.59032 1.11926 1.27528 1.36042 1.21153 1.37426 1.07427 0.91867 0.94122 1.25678 0.95870 1.00236 0.95078 1.70234 1.43589 1.34546 1.03317 0.85703 0.78399 0.80030 0.78556 1.19812 1.20487 1.20465 1.20775 0.96347 0.99033 0.96387 1.21245 1.01769 0.95802 0.99436 1.18601 0.94953 0.95197 0.90911 0.94726 0.88423 0.90491 0.93747 0.87452 0.87774 0.91801 0.90083 0.90739 0.87285 0.87946 0.86470 0.93544 0.86738 0.84181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 8.81 127.69 1.12 1.57 16 2 N -0.51 -12.56 4.78 -720.65 -3.44 -16.00 16 3 C 0.05 1.04 5.46 86.52 0.47 1.51 16 4 C -0.12 -2.28 6.19 30.73 0.19 -2.09 16 5 C -0.08 -1.96 5.81 29.89 0.17 -1.79 16 6 C -0.13 -4.45 5.74 -19.71 -0.11 -4.56 16 7 C -0.11 -4.54 9.26 22.32 0.21 -4.34 16 8 C -0.12 -5.44 4.88 -19.89 -0.10 -5.53 16 9 C 0.26 13.73 2.85 43.42 0.12 13.85 16 10 H 0.01 0.37 8.00 -2.39 -0.02 0.35 16 11 N -0.82 -40.07 8.37 -174.95 -1.46 -41.53 16 12 C -0.54 -31.08 8.70 25.60 0.22 -30.85 16 13 H 0.04 2.38 7.74 -2.91 -0.02 2.36 16 14 C 0.03 2.00 5.39 84.66 0.46 2.45 16 15 N -0.88 -52.99 12.77 21.45 0.27 -52.72 16 16 Si 0.95 45.22 29.54 68.60 2.03 47.25 16 17 H -0.27 -12.89 7.11 99.48 0.71 -12.18 16 18 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 19 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 20 C -0.11 -4.21 9.28 22.18 0.21 -4.00 16 21 C -0.16 -5.44 9.03 22.50 0.20 -5.23 16 22 C 0.10 3.25 5.82 38.30 0.22 3.47 16 23 H 0.03 0.67 8.12 -2.39 -0.02 0.65 16 24 H 0.10 1.30 8.06 -2.38 -0.02 1.28 16 25 H 0.08 1.44 6.31 -2.39 -0.02 1.43 16 26 H 0.04 0.85 8.11 -2.39 -0.02 0.83 16 27 H 0.11 1.47 8.14 -2.38 -0.02 1.45 16 28 H 0.10 1.40 8.14 -2.38 -0.02 1.38 16 29 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.11 4.41 8.03 -2.91 -0.02 4.39 16 33 H 0.31 13.62 9.06 -89.69 -0.81 12.81 16 34 H 0.32 14.94 7.35 -89.69 -0.66 14.29 16 35 H 0.26 14.59 8.31 -92.70 -0.77 13.82 16 36 H 0.11 4.45 6.67 -2.91 -0.02 4.43 16 37 H 0.14 3.89 5.96 -2.91 -0.02 3.88 16 Total: -1.00 -67.22 296.42 0.39 -66.83 By element: Atomic # 1 Polarization: 32.10 SS G_CDS: -0.39 Total: 31.70 kcal Atomic # 6 Polarization: -38.92 SS G_CDS: 3.39 Total: -35.53 kcal Atomic # 7 Polarization: -105.61 SS G_CDS: -4.63 Total: -110.25 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -67.22 0.39 -66.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259605064.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.075 kcal (2) G-P(sol) polarization free energy of solvation -67.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds