Wall clock time and date at job start Mon Mar 30 2020 03:32:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 119.99764 * 2 1 4 4 H 1.48502 * 109.46845 * 239.99352 * 3 2 1 5 5 H 1.48499 * 109.47344 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46848 * 120.00207 * 3 2 1 7 7 C 1.37872 * 119.99795 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99642 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00413 * 0.02562 * 7 2 1 10 10 C 1.50697 * 109.47209 * 179.97438 * 9 7 2 11 11 C 1.38130 * 120.03454 * 265.25700 * 10 9 7 12 12 C 1.38267 * 120.06879 * 180.27803 * 11 10 9 13 13 C 1.38304 * 120.15545 * 359.74011 * 12 11 10 14 14 C 1.38079 * 120.07059 * 359.97438 * 13 12 11 15 15 C 1.38887 * 120.03893 * 84.99817 * 10 9 7 16 16 N 1.39674 * 120.07372 * 0.02562 * 15 10 9 17 17 C 1.46959 * 110.99849 * 239.71893 * 16 15 10 18 18 C 1.53045 * 109.36290 * 176.81053 * 17 16 15 19 19 N 1.46956 * 109.36610 * 58.40596 * 18 17 16 20 20 C 1.46963 * 110.88015 * 300.67610 * 19 18 17 21 21 C 1.46956 * 110.99731 * 115.92233 * 16 15 10 22 22 H 0.97004 * 120.00151 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.46652 * 59.99615 * 9 7 2 24 24 H 1.08996 * 109.46675 * 299.99907 * 9 7 2 25 25 H 1.07999 * 119.96420 * 0.02562 * 11 10 9 26 26 H 1.08004 * 119.92054 * 179.76713 * 12 11 10 27 27 H 1.07995 * 119.96442 * 180.02562 * 13 12 11 28 28 H 1.07999 * 120.03872 * 180.02562 * 14 13 12 29 29 H 1.09001 * 109.48442 * 56.84386 * 17 16 15 30 30 H 1.09002 * 109.50679 * 296.79081 * 17 16 15 31 31 H 1.08997 * 109.49254 * 298.43844 * 18 17 16 32 32 H 1.08997 * 109.49000 * 178.37001 * 18 17 16 33 33 H 1.00894 * 111.00175 * 64.54295 * 19 18 17 34 34 H 1.09000 * 109.49332 * 179.28313 * 20 19 18 35 35 H 1.08997 * 109.48746 * 299.36011 * 20 19 18 36 36 H 1.09001 * 109.49385 * 303.14956 * 21 16 15 37 37 H 1.08994 * 109.49384 * 63.20273 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2303 -3.6446 0.0005 11 6 2.6045 -4.2343 -1.1912 12 6 3.4985 -5.2890 -1.1915 13 6 4.0253 -5.7537 -0.0002 14 6 3.6601 -5.1648 1.1942 15 6 2.7618 -4.1049 1.1983 16 7 2.3894 -3.5076 2.4047 17 6 3.5585 -2.9513 3.0999 18 6 3.0995 -2.2384 4.3740 19 7 2.3829 -3.1906 5.2340 20 6 1.2137 -3.7469 4.5388 21 6 1.6728 -4.4599 3.2645 22 1 -0.4850 0.8401 -0.0004 23 1 0.6247 -2.5570 -0.8897 24 1 0.6241 -2.5567 0.8903 25 1 2.1951 -3.8739 -2.1233 26 1 3.7865 -5.7508 -2.1244 27 1 4.7237 -6.5774 -0.0041 28 1 4.0721 -5.5278 2.1242 29 1 4.0650 -2.2400 2.4475 30 1 4.2442 -3.7574 3.3611 31 1 2.4354 -1.4151 4.1110 32 1 3.9677 -1.8500 4.9063 33 1 2.9979 -3.9247 5.5515 34 1 0.7072 -4.4583 5.1911 35 1 0.5284 -2.9407 4.2775 36 1 0.8044 -4.8483 2.7324 37 1 2.3366 -5.2834 3.5274 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259614315.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:30 Heat of formation + Delta-G solvation = 14.116356 kcal Electronic energy + Delta-G solvation = -18254.436548 eV Core-core repulsion = 15609.368810 eV Total energy + Delta-G solvation = -2645.067737 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.20789 -39.02014 -35.40077 -35.17698 -32.95392 -31.88949 -30.45477 -28.78954 -26.19219 -25.06664 -24.29846 -23.19024 -21.62274 -21.19243 -18.44512 -18.14713 -16.91704 -16.47077 -16.24454 -15.97047 -15.85324 -15.48615 -15.16707 -14.90296 -14.41537 -14.05243 -13.75350 -13.41364 -13.28632 -13.13593 -12.88162 -12.63434 -12.42482 -12.27180 -12.23945 -11.96557 -11.87818 -11.50797 -11.38670 -10.51638 -9.63589 -9.53953 -9.30349 -9.09769 -8.11596 -6.20518 0.47230 0.63547 1.38404 1.40860 1.48453 2.42878 2.88062 2.95644 3.20024 3.34333 4.04006 4.06300 4.12146 4.16661 4.20668 4.23098 4.32866 4.39687 4.60537 4.61231 4.70169 4.80694 4.82303 4.95852 5.06498 5.16126 5.21472 5.32476 5.50739 5.58608 5.68321 5.83384 5.88243 5.94749 6.15742 6.17666 6.28516 6.52098 6.67860 6.88850 7.44435 8.98190 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.015461 B = 0.010270 C = 0.007194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.564864 B = 2725.690950 C = 3891.273127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.006 3.994 3 Si 0.955 3.045 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.497 4.497 8 H 0.043 0.957 9 C 0.076 3.924 10 C -0.053 4.053 11 C -0.139 4.139 12 C -0.118 4.118 13 C -0.128 4.128 14 C -0.151 4.151 15 C 0.072 3.928 16 N -0.506 5.506 17 C 0.037 3.963 18 C 0.066 3.934 19 N -0.679 5.679 20 C 0.066 3.934 21 C 0.030 3.970 22 H 0.261 0.739 23 H -0.013 1.013 24 H 0.009 0.991 25 H 0.113 0.887 26 H 0.147 0.853 27 H 0.151 0.849 28 H 0.130 0.870 29 H 0.055 0.945 30 H 0.048 0.952 31 H 0.053 0.947 32 H 0.101 0.899 33 H 0.349 0.651 34 H 0.106 0.894 35 H 0.054 0.946 36 H 0.063 0.937 37 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.356 -11.386 6.595 15.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.191 4.191 3 Si 0.780 3.220 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.194 1.194 7 C -0.535 4.535 8 H 0.061 0.939 9 C 0.039 3.961 10 C -0.054 4.054 11 C -0.157 4.157 12 C -0.136 4.136 13 C -0.147 4.147 14 C -0.171 4.171 15 C -0.022 4.022 16 N -0.228 5.228 17 C -0.091 4.091 18 C -0.064 4.064 19 N -0.308 5.308 20 C -0.064 4.064 21 C -0.098 4.098 22 H 0.070 0.930 23 H 0.005 0.995 24 H 0.028 0.972 25 H 0.131 0.869 26 H 0.165 0.835 27 H 0.168 0.832 28 H 0.148 0.852 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.120 0.880 33 H 0.167 0.833 34 H 0.124 0.876 35 H 0.073 0.927 36 H 0.081 0.919 37 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 7.511 -10.370 6.871 14.532 hybrid contribution 0.805 0.036 -0.902 1.210 sum 8.316 -10.334 5.970 14.546 Atomic orbital electron populations 1.70080 1.07488 1.27384 1.52294 1.25767 0.95608 1.02475 0.95273 0.85662 0.78415 0.79004 0.78931 1.19559 1.20844 1.19437 1.21057 0.92162 0.91036 1.49268 0.93884 1.17807 0.92568 0.90803 0.94881 1.20464 0.96952 0.95315 0.92660 1.21177 0.99817 0.97651 0.97091 1.21384 0.96618 0.96161 0.99448 1.21215 1.00935 1.00941 0.91560 1.21701 0.99026 0.96949 0.99440 1.18712 0.97788 0.95089 0.90593 1.59362 1.25505 1.35220 1.02733 1.22732 0.90934 0.98636 0.96843 1.22018 0.98748 0.95296 0.90376 1.60724 1.10792 1.20544 1.38764 1.22060 0.93586 0.98700 0.92090 1.22852 0.98305 0.93421 0.95256 0.93027 0.99485 0.97234 0.86863 0.83506 0.83158 0.85239 0.92598 0.93400 0.92830 0.88038 0.83267 0.87579 0.92690 0.91881 0.93332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.77 13.29 21.45 0.28 -57.49 16 2 C 0.01 0.35 5.46 84.65 0.46 0.81 16 3 Si 0.95 45.69 29.54 68.60 2.03 47.72 16 4 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 5 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 6 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 7 C -0.50 -29.03 9.09 25.60 0.23 -28.79 16 8 H 0.04 2.51 7.74 -2.91 -0.02 2.48 16 9 C 0.08 4.24 4.80 29.10 0.14 4.38 16 10 C -0.05 -2.41 5.09 -19.74 -0.10 -2.51 16 11 C -0.14 -5.46 9.68 22.25 0.22 -5.24 16 12 C -0.12 -3.59 10.04 22.29 0.22 -3.37 16 13 C -0.13 -3.54 10.04 22.25 0.22 -3.31 16 14 C -0.15 -4.71 8.64 22.40 0.19 -4.51 16 15 C 0.07 2.82 4.70 38.21 0.18 3.00 16 16 N -0.51 -19.21 3.72 -694.77 -2.59 -21.79 16 17 C 0.04 1.21 5.31 86.31 0.46 1.67 16 18 C 0.07 1.96 6.72 86.31 0.58 2.54 16 19 N -0.68 -17.47 6.91 -513.42 -3.55 -21.02 16 20 C 0.07 1.83 6.72 86.31 0.58 2.41 16 21 C 0.03 0.91 5.35 86.31 0.46 1.38 16 22 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 23 H -0.01 -0.78 8.05 -2.39 -0.02 -0.80 16 24 H 0.01 0.57 7.63 -2.39 -0.02 0.55 16 25 H 0.11 4.44 8.06 -2.91 -0.02 4.42 16 26 H 0.15 3.39 8.06 -2.91 -0.02 3.37 16 27 H 0.15 2.96 8.06 -2.91 -0.02 2.94 16 28 H 0.13 3.36 7.06 -2.91 -0.02 3.34 16 29 H 0.06 2.13 8.13 -2.39 -0.02 2.11 16 30 H 0.05 1.32 7.24 -2.39 -0.02 1.31 16 31 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 33 H 0.35 7.07 8.89 -89.70 -0.80 6.27 16 34 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 35 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.06 2.10 8.13 -2.39 -0.02 2.08 16 37 H 0.05 1.26 7.44 -2.39 -0.02 1.24 16 Total: -1.00 -68.09 301.77 0.28 -67.82 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: 0.25 Total: 16.33 kcal Atomic # 6 Polarization: -35.42 SS G_CDS: 3.85 Total: -31.57 kcal Atomic # 7 Polarization: -94.45 SS G_CDS: -5.85 Total: -100.30 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Total: -68.09 0.28 -67.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259614315.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.935 kcal (2) G-P(sol) polarization free energy of solvation -68.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds