Wall clock time and date at job start Mon Mar 30 2020 04:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.36936 * 120.00122 * 2 1 4 4 H 1.07999 * 120.00255 * 200.41110 * 3 2 1 5 5 C 1.38818 * 120.00061 * 20.41465 * 3 2 1 6 6 N 1.31623 * 119.99665 * 15.04906 * 5 3 2 7 7 Si 1.86797 * 120.00018 * 195.04777 * 5 3 2 8 8 H 1.48503 * 109.46928 * 84.99864 * 7 5 3 9 9 H 1.48493 * 109.47293 * 204.99890 * 7 5 3 10 10 H 1.48495 * 109.47069 * 325.00292 * 7 5 3 11 11 C 1.46500 * 119.99915 * 179.97438 * 2 1 3 12 12 H 1.08995 * 109.63397 * 164.60434 * 11 2 1 13 13 C 1.52897 * 109.63273 * 285.00337 * 11 2 1 14 14 C 1.50722 * 109.87428 * 170.14544 * 13 11 2 15 15 C 1.38824 * 118.38468 * 163.34951 * 14 13 11 16 16 C 1.38026 * 120.31315 * 179.75014 * 15 14 13 17 17 C 1.38265 * 119.82932 * 359.93140 * 16 15 14 18 18 C 1.38013 * 119.86785 * 0.06741 * 17 16 15 19 19 C 1.37688 * 121.76253 * 343.05357 * 14 13 11 20 20 C 1.50629 * 121.81454 * 0.42913 * 19 14 13 21 21 N 1.46637 * 110.49776 * 342.53184 * 20 19 14 22 22 C 1.46894 * 110.99906 * 175.90283 * 21 20 19 23 23 H 1.08997 * 109.47414 * 275.23485 * 1 2 3 24 24 H 1.09008 * 109.46698 * 35.23118 * 1 2 3 25 25 H 1.08995 * 109.46987 * 155.22799 * 1 2 3 26 26 H 0.96998 * 119.99249 * 179.97438 * 6 5 3 27 27 H 1.08997 * 109.38915 * 290.24190 * 13 11 2 28 28 H 1.09001 * 109.39213 * 50.04174 * 13 11 2 29 29 H 1.07997 * 119.86126 * 359.68917 * 15 14 13 30 30 H 1.07997 * 120.08954 * 179.97438 * 16 15 14 31 31 H 1.07992 * 120.07156 * 180.02562 * 17 16 15 32 32 H 1.07999 * 119.81444 * 179.97438 * 18 17 16 33 33 H 1.08998 * 109.27311 * 222.26391 * 20 19 14 34 34 H 1.09007 * 109.24309 * 102.77315 * 20 19 14 35 35 H 1.09010 * 109.47262 * 297.01328 * 22 21 20 36 36 H 1.09004 * 109.47468 * 57.01422 * 22 21 20 37 37 H 1.08999 * 109.47526 * 177.01462 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1789 1.2153 -0.3262 5 6 1.5211 2.3504 0.4193 6 7 0.3891 2.2831 1.0875 7 14 2.2817 4.0127 0.0354 8 1 1.8652 4.4458 -1.3226 9 1 1.8229 5.0099 1.0355 10 1 3.7617 3.9038 0.0879 11 6 2.1975 -1.2687 0.0006 12 1 3.2378 -1.0912 -0.2721 13 6 2.1315 -1.8994 1.3918 14 6 2.6693 -3.3066 1.3426 15 6 3.0213 -3.9207 2.5368 16 6 3.5131 -5.2104 2.5384 17 6 3.6545 -5.8941 1.3450 18 6 3.3046 -5.2837 0.1576 19 6 2.8107 -3.9873 0.1541 20 6 2.4453 -3.3628 -1.1670 21 7 1.5813 -2.1959 -0.9619 22 6 1.2972 -1.5208 -2.2352 23 1 -0.3634 0.0938 1.0233 24 1 -0.3633 0.8395 -0.5929 25 1 -0.3633 -0.9331 -0.4306 26 1 -0.0500 3.0967 1.3808 27 1 2.7285 -1.3079 2.0859 28 1 1.0959 -1.9194 1.7314 29 1 2.9108 -3.3868 3.4690 30 1 3.7862 -5.6845 3.4695 31 1 4.0385 -6.9034 1.3418 32 1 3.4157 -5.8184 -0.7741 33 1 1.9201 -4.0963 -1.7787 34 1 3.3547 -3.0511 -1.6808 35 1 2.2265 -1.1419 -2.6609 36 1 0.8423 -2.2287 -2.9282 37 1 0.6122 -0.6910 -2.0617 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259662354.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:57 Heat of formation + Delta-G solvation = 67.598621 kcal Electronic energy + Delta-G solvation = -18232.964048 eV Core-core repulsion = 15590.215476 eV Total energy + Delta-G solvation = -2642.748572 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.77710 -37.28501 -34.41549 -32.44533 -31.48541 -30.48316 -27.97228 -26.56452 -25.65691 -23.73600 -22.62211 -21.83416 -20.91829 -18.56899 -16.87028 -16.33759 -15.48943 -15.08729 -14.70639 -14.40146 -14.10842 -13.70533 -13.27448 -13.03861 -12.80809 -12.52075 -12.24555 -12.02967 -11.74144 -11.44192 -11.03774 -10.91759 -10.82013 -10.69036 -10.53324 -10.35237 -10.16205 -9.90514 -9.77374 -8.57872 -8.57406 -8.22630 -7.70951 -6.82991 -5.72912 -3.17963 1.59690 1.65608 3.37952 3.44244 3.45250 4.00168 4.38302 4.58961 5.01525 5.09059 5.20172 5.21890 5.42999 5.57930 5.60370 5.69929 5.77854 5.83567 5.96949 6.06051 6.09562 6.22123 6.31406 6.34334 6.49182 6.68951 6.72726 6.73351 6.87223 6.99407 7.05490 7.27588 7.43059 7.55916 7.69934 7.78765 7.87288 8.39815 9.24025 9.86218 10.36697 11.31560 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.033303 B = 0.006396 C = 0.005899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.562740 B = 4376.361150 C = 4745.486569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.590 5.590 3 C -0.258 4.258 4 H 0.067 0.933 5 C 0.006 3.994 6 N -0.902 5.902 7 Si 0.904 3.096 8 H -0.288 1.288 9 H -0.291 1.291 10 H -0.281 1.281 11 C 0.339 3.661 12 H 0.036 0.964 13 C -0.087 4.087 14 C -0.053 4.053 15 C -0.124 4.124 16 C -0.125 4.125 17 C -0.134 4.134 18 C -0.118 4.118 19 C -0.079 4.079 20 C 0.100 3.900 21 N -0.550 5.550 22 C 0.033 3.967 23 H 0.026 0.974 24 H 0.038 0.962 25 H 0.019 0.981 26 H 0.252 0.748 27 H 0.075 0.925 28 H 0.082 0.918 29 H 0.119 0.881 30 H 0.116 0.884 31 H 0.116 0.884 32 H 0.117 0.883 33 H 0.079 0.921 34 H 0.040 0.960 35 H 0.018 0.982 36 H 0.049 0.951 37 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.158 -13.140 -1.653 13.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.313 5.313 3 C -0.388 4.388 4 H 0.085 0.915 5 C -0.193 4.193 6 N -0.547 5.547 7 Si 0.734 3.266 8 H -0.215 1.215 9 H -0.217 1.217 10 H -0.206 1.206 11 C 0.144 3.856 12 H 0.053 0.947 13 C -0.126 4.126 14 C -0.054 4.054 15 C -0.142 4.142 16 C -0.143 4.143 17 C -0.152 4.152 18 C -0.137 4.137 19 C -0.079 4.079 20 C -0.028 4.028 21 N -0.277 5.277 22 C -0.115 4.115 23 H 0.044 0.956 24 H 0.056 0.944 25 H 0.037 0.963 26 H 0.063 0.937 27 H 0.094 0.906 28 H 0.100 0.900 29 H 0.137 0.863 30 H 0.134 0.866 31 H 0.134 0.866 32 H 0.135 0.865 33 H 0.097 0.903 34 H 0.057 0.943 35 H 0.036 0.964 36 H 0.068 0.932 37 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 3.579 -13.109 -1.396 13.661 hybrid contribution 1.151 1.160 -0.343 1.669 sum 4.730 -11.950 -1.739 12.969 Atomic orbital electron populations 1.20797 0.82015 0.96121 0.99336 1.43979 1.02297 0.99574 1.85423 1.19158 0.96948 0.84812 1.37886 0.91535 1.24922 0.97794 0.98209 0.98403 1.70118 1.18768 1.26804 1.38995 0.86281 0.78601 0.84048 0.77644 1.21463 1.21725 1.20638 1.20756 0.92067 0.83507 0.89269 0.94664 1.21148 1.01514 0.89939 1.00047 1.19981 0.96449 0.96808 0.92116 1.21213 0.99936 0.95235 0.97817 1.21018 1.00498 0.95024 0.97774 1.20924 1.01944 0.99644 0.92716 1.20961 1.00182 0.94552 0.97996 1.19619 0.99374 0.94164 0.94782 1.20837 0.95126 0.93450 0.93420 1.62465 1.45236 1.08695 1.11325 1.22273 1.00535 0.99133 0.89560 0.95602 0.94369 0.96252 0.93731 0.90625 0.89961 0.86266 0.86606 0.86625 0.86543 0.90278 0.94250 0.96388 0.93231 0.89291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.99 7.02 59.85 0.42 4.41 16 2 N -0.59 -14.64 2.10 -176.79 -0.37 -15.01 16 3 C -0.26 -7.03 9.65 -15.06 -0.15 -7.18 16 4 H 0.07 1.79 7.79 -52.49 -0.41 1.38 16 5 C 0.01 0.15 5.06 -17.43 -0.09 0.07 16 6 N -0.90 -26.08 10.67 55.49 0.59 -25.49 16 7 Si 0.90 21.75 29.58 -169.99 -5.03 16.72 16 8 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 9 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 11 C 0.34 7.24 2.33 -126.97 -0.30 6.94 16 12 H 0.04 0.80 7.80 -51.93 -0.40 0.39 16 13 C -0.09 -1.72 5.49 -27.92 -0.15 -1.87 16 14 C -0.05 -0.91 5.77 -104.60 -0.60 -1.51 16 15 C -0.12 -1.87 9.66 -39.44 -0.38 -2.25 16 16 C -0.13 -1.63 10.05 -39.65 -0.40 -2.03 16 17 C -0.13 -1.68 10.05 -39.65 -0.40 -2.08 16 18 C -0.12 -1.59 9.65 -39.48 -0.38 -1.97 16 19 C -0.08 -1.26 5.79 -104.67 -0.61 -1.87 16 20 C 0.10 1.59 5.25 -5.15 -0.03 1.56 16 21 N -0.55 -10.32 4.07 -240.23 -0.98 -11.30 16 22 C 0.03 0.59 8.78 60.06 0.53 1.12 16 23 H 0.03 0.70 7.39 -51.93 -0.38 0.31 16 24 H 0.04 1.01 7.23 -51.92 -0.38 0.63 16 25 H 0.02 0.43 6.23 -51.93 -0.32 0.11 16 26 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 27 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 28 H 0.08 1.75 7.88 -51.93 -0.41 1.34 16 29 H 0.12 1.66 8.06 -52.49 -0.42 1.23 16 30 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 31 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 32 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 33 H 0.08 1.10 8.13 -51.93 -0.42 0.68 16 34 H 0.04 0.61 8.13 -51.93 -0.42 0.19 16 35 H 0.02 0.32 8.14 -51.92 -0.42 -0.10 16 36 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.09 1.80 5.32 -51.93 -0.28 1.53 16 LS Contribution 293.16 15.07 4.42 4.42 Total: -1.00 -29.04 293.16 -9.42 -38.46 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: -5.52 Total: -1.14 kcal Atomic # 6 Polarization: -4.14 SS G_CDS: -2.53 Total: -6.67 kcal Atomic # 7 Polarization: -51.04 SS G_CDS: -0.76 Total: -51.79 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.03 Total: 16.72 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -29.04 -9.42 -38.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259662354.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.061 kcal (2) G-P(sol) polarization free energy of solvation -29.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds