Wall clock time and date at job start Mon Mar 30 2020 04:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.36936 * 120.00122 * 2 1 4 4 H 1.07999 * 120.00255 * 200.41110 * 3 2 1 5 5 C 1.38818 * 120.00061 * 20.41465 * 3 2 1 6 6 N 1.31623 * 119.99665 * 15.04906 * 5 3 2 7 7 Si 1.86797 * 120.00018 * 195.04777 * 5 3 2 8 8 H 1.48503 * 109.46928 * 84.99864 * 7 5 3 9 9 H 1.48493 * 109.47293 * 204.99890 * 7 5 3 10 10 H 1.48495 * 109.47069 * 325.00292 * 7 5 3 11 11 C 1.46500 * 119.99915 * 179.97438 * 2 1 3 12 12 H 1.08995 * 109.63397 * 164.60434 * 11 2 1 13 13 C 1.52897 * 109.63273 * 285.00337 * 11 2 1 14 14 C 1.50722 * 109.87428 * 170.14544 * 13 11 2 15 15 C 1.38824 * 118.38468 * 163.34951 * 14 13 11 16 16 C 1.38026 * 120.31315 * 179.75014 * 15 14 13 17 17 C 1.38265 * 119.82932 * 359.93140 * 16 15 14 18 18 C 1.38013 * 119.86785 * 0.06741 * 17 16 15 19 19 C 1.37688 * 121.76253 * 343.05357 * 14 13 11 20 20 C 1.50629 * 121.81454 * 0.42913 * 19 14 13 21 21 N 1.46637 * 110.49776 * 342.53184 * 20 19 14 22 22 C 1.46894 * 110.99906 * 175.90283 * 21 20 19 23 23 H 1.08997 * 109.47414 * 275.23485 * 1 2 3 24 24 H 1.09008 * 109.46698 * 35.23118 * 1 2 3 25 25 H 1.08995 * 109.46987 * 155.22799 * 1 2 3 26 26 H 0.96998 * 119.99249 * 179.97438 * 6 5 3 27 27 H 1.08997 * 109.38915 * 290.24190 * 13 11 2 28 28 H 1.09001 * 109.39213 * 50.04174 * 13 11 2 29 29 H 1.07997 * 119.86126 * 359.68917 * 15 14 13 30 30 H 1.07997 * 120.08954 * 179.97438 * 16 15 14 31 31 H 1.07992 * 120.07156 * 180.02562 * 17 16 15 32 32 H 1.07999 * 119.81444 * 179.97438 * 18 17 16 33 33 H 1.08998 * 109.27311 * 222.26391 * 20 19 14 34 34 H 1.09007 * 109.24309 * 102.77315 * 20 19 14 35 35 H 1.09010 * 109.47262 * 297.01328 * 22 21 20 36 36 H 1.09004 * 109.47468 * 57.01422 * 22 21 20 37 37 H 1.08999 * 109.47526 * 177.01462 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1789 1.2153 -0.3262 5 6 1.5211 2.3504 0.4193 6 7 0.3891 2.2831 1.0875 7 14 2.2817 4.0127 0.0354 8 1 1.8652 4.4458 -1.3226 9 1 1.8229 5.0099 1.0355 10 1 3.7617 3.9038 0.0879 11 6 2.1975 -1.2687 0.0006 12 1 3.2378 -1.0912 -0.2721 13 6 2.1315 -1.8994 1.3918 14 6 2.6693 -3.3066 1.3426 15 6 3.0213 -3.9207 2.5368 16 6 3.5131 -5.2104 2.5384 17 6 3.6545 -5.8941 1.3450 18 6 3.3046 -5.2837 0.1576 19 6 2.8107 -3.9873 0.1541 20 6 2.4453 -3.3628 -1.1670 21 7 1.5813 -2.1959 -0.9619 22 6 1.2972 -1.5208 -2.2352 23 1 -0.3634 0.0938 1.0233 24 1 -0.3633 0.8395 -0.5929 25 1 -0.3633 -0.9331 -0.4306 26 1 -0.0500 3.0967 1.3808 27 1 2.7285 -1.3079 2.0859 28 1 1.0959 -1.9194 1.7314 29 1 2.9108 -3.3868 3.4690 30 1 3.7862 -5.6845 3.4695 31 1 4.0385 -6.9034 1.3418 32 1 3.4157 -5.8184 -0.7741 33 1 1.9201 -4.0963 -1.7787 34 1 3.3547 -3.0511 -1.6808 35 1 2.2265 -1.1419 -2.6609 36 1 0.8423 -2.2287 -2.9282 37 1 0.6122 -0.6910 -2.0617 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259662354.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:57 Heat of formation + Delta-G solvation = 51.403433 kcal Electronic energy + Delta-G solvation = -18233.666324 eV Core-core repulsion = 15590.215476 eV Total energy + Delta-G solvation = -2643.450848 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.07045 -38.74679 -36.20737 -33.86910 -33.03168 -32.03241 -29.48324 -28.21923 -27.38808 -25.40211 -24.16147 -22.97245 -22.45524 -20.05923 -18.88431 -17.53067 -17.22141 -16.48849 -16.18864 -15.95694 -15.52102 -15.13236 -14.83488 -14.63942 -14.34105 -13.97582 -13.73279 -13.47390 -13.17948 -12.93930 -12.79353 -12.66451 -12.43506 -12.33064 -12.23879 -12.02188 -11.90406 -11.64872 -11.47913 -10.68227 -9.69641 -9.44836 -9.17583 -8.88019 -7.85157 -5.32556 0.50901 0.53222 1.45049 1.46518 1.54745 2.46482 2.89148 3.05251 3.28333 3.52369 3.84713 4.06833 4.11762 4.21988 4.28042 4.38355 4.46049 4.52504 4.66627 4.70491 4.76073 4.88773 4.90207 4.97027 5.12818 5.18764 5.19272 5.30112 5.36156 5.56782 5.63163 5.66470 5.73427 5.75362 6.00923 6.17575 6.22082 6.39431 7.13464 7.83243 8.29977 9.18244 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.033303 B = 0.006396 C = 0.005899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.562740 B = 4376.361150 C = 4745.486569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.188 3.812 2 N -0.601 5.601 3 C -0.267 4.267 4 H 0.065 0.935 5 C -0.046 4.046 6 N -0.934 5.934 7 Si 0.969 3.031 8 H -0.284 1.284 9 H -0.294 1.294 10 H -0.272 1.272 11 C 0.343 3.657 12 H 0.020 0.980 13 C -0.073 4.073 14 C -0.083 4.083 15 C -0.137 4.137 16 C -0.122 4.122 17 C -0.125 4.125 18 C -0.116 4.116 19 C -0.095 4.095 20 C 0.100 3.900 21 N -0.556 5.556 22 C 0.038 3.962 23 H -0.005 1.005 24 H 0.014 0.986 25 H 0.040 0.960 26 H 0.249 0.751 27 H 0.055 0.945 28 H 0.058 0.942 29 H 0.119 0.881 30 H 0.145 0.855 31 H 0.153 0.847 32 H 0.147 0.853 33 H 0.107 0.893 34 H 0.044 0.956 35 H 0.013 0.987 36 H 0.083 0.917 37 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.529 -15.714 -2.496 16.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.325 5.325 3 C -0.397 4.397 4 H 0.083 0.917 5 C -0.242 4.242 6 N -0.580 5.580 7 Si 0.798 3.202 8 H -0.210 1.210 9 H -0.220 1.220 10 H -0.197 1.197 11 C 0.148 3.852 12 H 0.037 0.963 13 C -0.113 4.113 14 C -0.084 4.084 15 C -0.155 4.155 16 C -0.140 4.140 17 C -0.143 4.143 18 C -0.134 4.134 19 C -0.096 4.096 20 C -0.028 4.028 21 N -0.283 5.283 22 C -0.110 4.110 23 H 0.013 0.987 24 H 0.032 0.968 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.138 0.862 30 H 0.163 0.837 31 H 0.171 0.829 32 H 0.165 0.835 33 H 0.125 0.875 34 H 0.062 0.938 35 H 0.032 0.968 36 H 0.102 0.898 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.973 -15.721 -2.253 16.642 hybrid contribution 0.777 1.812 -0.082 1.974 sum 5.750 -13.909 -2.335 15.231 Atomic orbital electron populations 1.20424 0.82271 0.95977 0.97010 1.44098 1.02313 1.00470 1.85615 1.19427 0.97041 0.86032 1.37221 0.91694 1.25681 0.98461 1.01470 0.98564 1.70281 1.20164 1.27270 1.40258 0.85255 0.78148 0.79666 0.77176 1.21044 1.21997 1.19670 1.20734 0.90862 0.82814 0.90797 0.96263 1.20826 0.99949 0.92171 0.98387 1.19800 0.99119 0.95484 0.93969 1.21328 1.00516 0.96533 0.97147 1.21379 0.99112 0.93907 0.99625 1.21405 1.00037 1.00982 0.91870 1.21288 0.98903 0.93341 0.99881 1.19759 1.00319 0.95461 0.94018 1.20974 0.95138 0.92486 0.94152 1.62414 1.45851 1.08776 1.11231 1.22222 0.99855 0.99164 0.89748 0.98662 0.96763 0.94196 0.94178 0.92688 0.92381 0.86246 0.83696 0.82949 0.83506 0.87511 0.93764 0.96847 0.89797 0.92119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 9.70 7.02 127.77 0.90 10.60 16 2 N -0.60 -31.03 2.10 -713.25 -1.50 -32.52 16 3 C -0.27 -14.98 9.65 84.04 0.81 -14.17 16 4 H 0.07 3.59 7.79 -2.91 -0.02 3.57 16 5 C -0.05 -2.61 5.06 84.86 0.43 -2.18 16 6 N -0.93 -55.99 10.67 21.65 0.23 -55.76 16 7 Si 0.97 45.61 29.58 68.60 2.03 47.64 16 8 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 9 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 10 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 11 C 0.34 15.05 2.33 129.28 0.30 15.35 16 12 H 0.02 0.91 7.80 -2.39 -0.02 0.89 16 13 C -0.07 -3.05 5.49 29.82 0.16 -2.88 16 14 C -0.08 -2.84 5.77 -19.85 -0.11 -2.95 16 15 C -0.14 -4.02 9.66 22.36 0.22 -3.80 16 16 C -0.12 -2.79 10.05 22.23 0.22 -2.57 16 17 C -0.13 -2.55 10.05 22.22 0.22 -2.33 16 18 C -0.12 -2.65 9.65 22.33 0.22 -2.44 16 19 C -0.10 -2.85 5.79 -19.90 -0.12 -2.96 16 20 C 0.10 2.95 5.25 85.58 0.45 3.40 16 21 N -0.56 -20.57 4.07 -913.96 -3.72 -24.29 16 22 C 0.04 1.33 8.78 127.69 1.12 2.45 16 23 H 0.00 -0.28 7.39 -2.39 -0.02 -0.30 16 24 H 0.01 0.77 7.23 -2.38 -0.02 0.75 16 25 H 0.04 1.85 6.23 -2.39 -0.01 1.84 16 26 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 27 H 0.05 2.41 8.14 -2.39 -0.02 2.39 16 28 H 0.06 2.62 7.88 -2.39 -0.02 2.60 16 29 H 0.12 3.35 8.06 -2.91 -0.02 3.33 16 30 H 0.15 2.43 8.06 -2.91 -0.02 2.41 16 31 H 0.15 2.03 8.06 -2.91 -0.02 2.01 16 32 H 0.15 2.44 8.06 -2.91 -0.02 2.42 16 33 H 0.11 2.56 8.13 -2.39 -0.02 2.54 16 34 H 0.04 1.27 8.13 -2.38 -0.02 1.26 16 35 H 0.01 0.46 8.14 -2.38 -0.02 0.44 16 36 H 0.08 2.34 8.14 -2.38 -0.02 2.32 16 37 H 0.06 2.47 5.32 -2.39 -0.01 2.46 16 Total: -1.00 -64.76 293.16 2.90 -61.86 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: 1.04 Total: 7.56 kcal Atomic # 6 Polarization: -9.31 SS G_CDS: 4.82 Total: -4.49 kcal Atomic # 7 Polarization: -107.59 SS G_CDS: -4.99 Total: -112.58 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Total: -64.76 2.90 -61.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259662354.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.264 kcal (2) G-P(sol) polarization free energy of solvation -64.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds