Wall clock time and date at job start Mon Mar 30 2020 03:44:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35362 * 126.38044 * 2 1 4 4 N 1.36487 * 108.54059 * 179.82877 * 3 2 1 5 5 C 1.36162 * 108.20184 * 0.06332 * 4 3 2 6 6 C 1.35321 * 108.47002 * 0.04411 * 5 4 3 7 7 C 1.50747 * 123.61671 * 179.77004 * 6 5 4 8 8 H 1.09007 * 109.71104 * 103.41975 * 7 6 5 9 9 C 1.50701 * 109.71269 * 224.05560 * 7 6 5 10 10 H 1.07994 * 119.99801 * 359.97438 * 9 7 6 11 11 C 1.37881 * 119.99962 * 180.02562 * 9 7 6 12 12 N 1.31517 * 119.99861 * 359.97438 * 11 9 7 13 13 Si 1.86795 * 120.00026 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.46954 * 59.99667 * 13 11 9 15 15 H 1.48496 * 109.46983 * 180.02562 * 13 11 9 16 16 H 1.48506 * 109.47114 * 300.00028 * 13 11 9 17 17 N 1.47319 * 108.22453 * 343.73783 * 7 6 5 18 18 C 1.46943 * 111.45595 * 51.15565 * 17 7 6 19 19 C 1.50916 * 128.36569 * 180.18696 * 5 4 3 20 20 C 1.47314 * 110.56041 * 180.13421 * 4 3 2 21 21 C 1.54285 * 105.72327 * 342.73227 * 20 4 3 22 22 C 1.51481 * 141.50827 * 359.65090 * 3 2 1 23 23 H 1.08999 * 109.47570 * 90.02139 * 1 2 3 24 24 H 1.09000 * 109.47523 * 210.02357 * 1 2 3 25 25 H 1.09006 * 109.47112 * 330.02032 * 1 2 3 26 26 H 0.96996 * 120.00013 * 179.97438 * 12 11 9 27 27 H 1.00900 * 110.99883 * 175.44294 * 17 7 6 28 28 H 1.09006 * 109.44403 * 48.66539 * 18 17 7 29 29 H 1.09002 * 109.44312 * 168.58768 * 18 17 7 30 30 H 1.08997 * 109.79189 * 44.49516 * 19 5 4 31 31 H 1.08996 * 109.79789 * 283.64977 * 19 5 4 32 32 H 1.09002 * 110.20040 * 223.66762 * 20 4 3 33 33 H 1.09002 * 110.26498 * 101.83608 * 20 4 3 34 34 H 1.09002 * 110.93244 * 144.31344 * 21 20 4 35 35 H 1.08999 * 110.93420 * 267.94233 * 21 20 4 36 36 H 1.08999 * 110.46134 * 78.21742 * 22 3 2 37 37 H 1.09001 * 110.50004 * 315.60911 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3099 1.0898 0.0000 4 7 3.6091 0.6717 0.0039 5 6 3.6177 -0.6899 0.0049 6 6 2.3370 -1.1267 0.0007 7 6 1.9523 -2.5843 -0.0047 8 1 1.6260 -2.8821 0.9919 9 6 0.8390 -2.8126 -0.9943 10 1 0.4457 -1.9844 -1.5652 11 6 0.3217 -4.0785 -1.1702 12 7 0.8003 -5.0869 -0.4746 13 14 -1.0588 -4.3613 -2.3964 14 1 -0.6032 -3.9680 -3.7540 15 1 -1.4341 -5.7981 -2.3965 16 1 -2.2369 -3.5425 -2.0131 17 7 3.1344 -3.3713 -0.3963 18 6 4.3089 -3.0155 0.4118 19 6 4.8069 -1.6191 0.0127 20 6 4.5242 1.8262 0.0073 21 6 3.6738 3.0349 -0.4357 22 6 2.2541 2.6036 -0.0057 23 1 -0.3634 -0.0004 -1.0276 24 1 -0.3634 -0.8897 0.5142 25 1 -0.3634 0.8902 0.5135 26 1 0.4362 -5.9774 -0.5981 27 1 2.9443 -4.3608 -0.3419 28 1 4.0366 -3.0155 1.4673 29 1 5.1010 -3.7448 0.2416 30 1 5.5438 -1.2694 0.7356 31 1 5.2528 -1.6564 -0.9812 32 1 5.3401 1.6618 -0.6966 33 1 4.9199 1.9913 1.0094 34 1 3.9812 3.9401 0.0881 35 1 3.7281 3.1746 -1.5153 36 1 2.0268 2.9803 0.9915 37 1 1.5145 2.9556 -0.7249 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259687122.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:15 Heat of formation + Delta-G solvation = 52.467610 kcal Electronic energy + Delta-G solvation = -18396.122359 eV Core-core repulsion = 15752.717657 eV Total energy + Delta-G solvation = -2643.404702 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.16394 -36.80667 -34.22914 -33.01098 -31.55676 -29.24309 -28.16639 -27.80647 -25.43528 -23.65418 -22.47579 -21.02665 -20.37775 -18.24389 -17.35934 -16.20245 -16.14025 -15.02754 -14.57720 -14.19939 -13.67731 -13.35625 -13.09530 -12.95052 -12.53045 -12.49496 -12.24695 -11.74225 -11.59118 -11.45588 -11.32602 -11.26100 -11.08265 -10.79507 -10.63307 -10.43498 -10.33499 -10.17438 -9.42424 -9.08026 -8.43379 -7.40698 -6.87370 -6.67848 -5.94300 -3.93998 2.92822 3.40491 3.44113 3.47238 3.50003 3.91018 4.48233 4.54783 4.84628 4.88466 5.25818 5.32398 5.43401 5.56445 5.61888 5.72317 5.78786 5.87189 5.97334 6.08786 6.16661 6.25045 6.30709 6.37855 6.52501 6.69099 6.72186 6.78350 7.03315 7.19649 7.39810 7.54265 7.85390 8.01059 8.07035 8.30976 8.48633 8.80328 9.13236 9.17884 9.71405 11.16164 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.026512 B = 0.008157 C = 0.006610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.870660 B = 3431.937881 C = 4234.831476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.121 4.121 3 C -0.042 4.042 4 N -0.471 5.471 5 C 0.015 3.985 6 C -0.107 4.107 7 C 0.281 3.719 8 H 0.005 0.995 9 C -0.481 4.481 10 H 0.064 0.936 11 C 0.064 3.936 12 N -0.905 5.905 13 Si 0.895 3.105 14 H -0.278 1.278 15 H -0.289 1.289 16 H -0.278 1.278 17 N -0.683 5.683 18 C 0.061 3.939 19 C -0.034 4.034 20 C 0.111 3.889 21 C -0.130 4.130 22 C -0.049 4.049 23 H 0.054 0.946 24 H 0.071 0.929 25 H 0.037 0.963 26 H 0.262 0.738 27 H 0.361 0.639 28 H 0.016 0.984 29 H 0.057 0.943 30 H 0.051 0.949 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.052 12.484 2.051 14.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.128 4.128 3 C -0.153 4.153 4 N -0.150 5.150 5 C -0.093 4.093 6 C -0.114 4.114 7 C 0.174 3.826 8 H 0.022 0.978 9 C -0.520 4.520 10 H 0.082 0.918 11 C -0.137 4.137 12 N -0.546 5.546 13 Si 0.723 3.277 14 H -0.203 1.203 15 H -0.215 1.215 16 H -0.203 1.203 17 N -0.319 5.319 18 C -0.070 4.070 19 C -0.073 4.073 20 C -0.010 4.010 21 C -0.168 4.168 22 C -0.087 4.087 23 H 0.073 0.927 24 H 0.090 0.910 25 H 0.056 0.944 26 H 0.071 0.929 27 H 0.184 0.816 28 H 0.034 0.966 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.085 0.915 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.104 0.896 35 H 0.097 0.903 36 H 0.092 0.908 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 6.626 12.805 1.570 14.503 hybrid contribution -0.716 -0.614 0.122 0.951 sum 5.910 12.191 1.692 13.653 Atomic orbital electron populations 1.20064 0.90799 1.00693 1.00925 1.18485 0.94960 0.90069 1.09311 1.21206 0.85166 0.93619 1.15263 1.44747 1.07279 1.04174 1.58795 1.19917 0.96929 0.79355 1.13099 1.19761 0.89977 0.96428 1.05197 1.17568 0.87495 0.82865 0.94663 0.97819 1.21087 1.14994 0.93777 1.22109 0.91768 1.24983 0.96790 0.96141 0.95736 1.69704 1.43335 1.00139 1.41449 0.86608 0.82302 0.76772 0.81977 1.20327 1.21524 1.20340 1.60801 1.04019 1.12480 1.54598 1.21772 0.95754 0.94291 0.95177 1.20159 0.93044 0.93621 1.00427 1.22108 0.92948 0.84373 1.01570 1.22601 0.95237 0.96773 1.02158 1.20528 0.96484 0.90033 1.01640 0.92723 0.91010 0.94420 0.92854 0.81589 0.96631 0.92418 0.93014 0.91499 0.90685 0.90994 0.89576 0.90325 0.90808 0.90368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.36 8.86 36.01 0.32 -1.04 16 2 C -0.12 -2.67 5.92 -105.01 -0.62 -3.29 16 3 C -0.04 -0.81 7.35 -81.16 -0.60 -1.40 16 4 N -0.47 -8.79 3.59 -106.00 -0.38 -9.17 16 5 C 0.02 0.33 7.13 -81.60 -0.58 -0.25 16 6 C -0.11 -2.61 5.48 -105.00 -0.58 -3.18 16 7 C 0.28 7.53 2.70 -69.76 -0.19 7.34 16 8 H 0.00 0.13 8.14 -51.92 -0.42 -0.29 16 9 C -0.48 -13.52 7.63 -34.44 -0.26 -13.78 16 10 H 0.06 1.81 6.31 -52.49 -0.33 1.48 16 11 C 0.06 1.79 5.39 -17.82 -0.10 1.69 16 12 N -0.91 -25.77 11.65 55.43 0.65 -25.13 16 13 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 14 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 15 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 16 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 17 N -0.68 -17.23 6.39 -108.52 -0.69 -17.93 16 18 C 0.06 1.28 6.51 -3.53 -0.02 1.26 16 19 C -0.03 -0.65 6.52 -27.50 -0.18 -0.83 16 20 C 0.11 1.46 7.77 -2.92 -0.02 1.44 16 21 C -0.13 -1.40 7.14 -25.28 -0.18 -1.58 16 22 C -0.05 -0.66 6.85 -26.72 -0.18 -0.84 16 23 H 0.05 1.09 7.78 -51.93 -0.40 0.69 16 24 H 0.07 1.56 7.67 -51.93 -0.40 1.16 16 25 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 27 H 0.36 9.58 7.06 -39.29 -0.28 9.30 16 28 H 0.02 0.33 8.07 -51.93 -0.42 -0.09 16 29 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 30 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 LS Contribution 292.51 15.07 4.41 4.41 Total: -1.00 -31.17 292.51 -9.85 -41.01 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -5.62 Total: 4.56 kcal Atomic # 6 Polarization: -11.28 SS G_CDS: -3.19 Total: -14.47 kcal Atomic # 7 Polarization: -51.80 SS G_CDS: -0.43 Total: -52.23 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -31.17 -9.85 -41.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259687122.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.482 kcal (2) G-P(sol) polarization free energy of solvation -31.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds