Wall clock time and date at job start Mon Mar 30 2020 03:44:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35362 * 126.38044 * 2 1 4 4 N 1.36487 * 108.54059 * 179.82877 * 3 2 1 5 5 C 1.36162 * 108.20184 * 0.06332 * 4 3 2 6 6 C 1.35321 * 108.47002 * 0.04411 * 5 4 3 7 7 C 1.50747 * 123.61671 * 179.77004 * 6 5 4 8 8 H 1.09007 * 109.71104 * 103.41975 * 7 6 5 9 9 C 1.50701 * 109.71269 * 224.05560 * 7 6 5 10 10 H 1.07994 * 119.99801 * 359.97438 * 9 7 6 11 11 C 1.37881 * 119.99962 * 180.02562 * 9 7 6 12 12 N 1.31517 * 119.99861 * 359.97438 * 11 9 7 13 13 Si 1.86795 * 120.00026 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.46954 * 59.99667 * 13 11 9 15 15 H 1.48496 * 109.46983 * 180.02562 * 13 11 9 16 16 H 1.48506 * 109.47114 * 300.00028 * 13 11 9 17 17 N 1.47319 * 108.22453 * 343.73783 * 7 6 5 18 18 C 1.46943 * 111.45595 * 51.15565 * 17 7 6 19 19 C 1.50916 * 128.36569 * 180.18696 * 5 4 3 20 20 C 1.47314 * 110.56041 * 180.13421 * 4 3 2 21 21 C 1.54285 * 105.72327 * 342.73227 * 20 4 3 22 22 C 1.51481 * 141.50827 * 359.65090 * 3 2 1 23 23 H 1.08999 * 109.47570 * 90.02139 * 1 2 3 24 24 H 1.09000 * 109.47523 * 210.02357 * 1 2 3 25 25 H 1.09006 * 109.47112 * 330.02032 * 1 2 3 26 26 H 0.96996 * 120.00013 * 179.97438 * 12 11 9 27 27 H 1.00900 * 110.99883 * 175.44294 * 17 7 6 28 28 H 1.09006 * 109.44403 * 48.66539 * 18 17 7 29 29 H 1.09002 * 109.44312 * 168.58768 * 18 17 7 30 30 H 1.08997 * 109.79189 * 44.49516 * 19 5 4 31 31 H 1.08996 * 109.79789 * 283.64977 * 19 5 4 32 32 H 1.09002 * 110.20040 * 223.66762 * 20 4 3 33 33 H 1.09002 * 110.26498 * 101.83608 * 20 4 3 34 34 H 1.09002 * 110.93244 * 144.31344 * 21 20 4 35 35 H 1.08999 * 110.93420 * 267.94233 * 21 20 4 36 36 H 1.08999 * 110.46134 * 78.21742 * 22 3 2 37 37 H 1.09001 * 110.50004 * 315.60911 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3099 1.0898 0.0000 4 7 3.6091 0.6717 0.0039 5 6 3.6177 -0.6899 0.0049 6 6 2.3370 -1.1267 0.0007 7 6 1.9523 -2.5843 -0.0047 8 1 1.6260 -2.8821 0.9919 9 6 0.8390 -2.8126 -0.9943 10 1 0.4457 -1.9844 -1.5652 11 6 0.3217 -4.0785 -1.1702 12 7 0.8003 -5.0869 -0.4746 13 14 -1.0588 -4.3613 -2.3964 14 1 -0.6032 -3.9680 -3.7540 15 1 -1.4341 -5.7981 -2.3965 16 1 -2.2369 -3.5425 -2.0131 17 7 3.1344 -3.3713 -0.3963 18 6 4.3089 -3.0155 0.4118 19 6 4.8069 -1.6191 0.0127 20 6 4.5242 1.8262 0.0073 21 6 3.6738 3.0349 -0.4357 22 6 2.2541 2.6036 -0.0057 23 1 -0.3634 -0.0004 -1.0276 24 1 -0.3634 -0.8897 0.5142 25 1 -0.3634 0.8902 0.5135 26 1 0.4362 -5.9774 -0.5981 27 1 2.9443 -4.3608 -0.3419 28 1 4.0366 -3.0155 1.4673 29 1 5.1010 -3.7448 0.2416 30 1 5.5438 -1.2694 0.7356 31 1 5.2528 -1.6564 -0.9812 32 1 5.3401 1.6618 -0.6966 33 1 4.9199 1.9913 1.0094 34 1 3.9812 3.9401 0.0881 35 1 3.7281 3.1746 -1.5153 36 1 2.0268 2.9803 0.9915 37 1 1.5145 2.9556 -0.7249 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259687122.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:15 Heat of formation + Delta-G solvation = 32.446310 kcal Electronic energy + Delta-G solvation = -18396.990548 eV Core-core repulsion = 15752.717657 eV Total energy + Delta-G solvation = -2644.272891 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.62184 -38.41248 -35.65565 -34.89954 -33.24066 -30.97085 -29.71180 -29.19855 -27.25575 -25.21594 -24.07576 -22.64932 -21.66973 -19.81698 -18.96136 -18.24760 -17.33682 -16.72047 -16.27690 -15.92363 -15.33059 -14.87526 -14.61461 -14.23573 -14.11230 -14.08103 -13.76979 -13.26061 -13.15417 -12.99276 -12.85084 -12.76359 -12.61981 -12.34926 -12.27986 -12.11238 -12.05049 -11.51666 -11.30490 -11.04747 -10.57917 -9.06998 -8.69930 -8.38463 -8.05465 -6.15527 1.41742 1.44610 1.45683 1.53020 2.17773 2.19702 2.50364 3.16195 3.47849 3.78206 3.95769 4.01851 4.05821 4.24058 4.33065 4.48110 4.55038 4.67400 4.69095 4.73929 4.78335 4.90228 4.94488 4.99191 5.03179 5.08816 5.16274 5.23172 5.33732 5.35062 5.60601 5.78520 5.86666 6.16964 6.44522 6.53037 6.76168 6.84019 7.01270 7.13784 7.53095 9.01216 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.026512 B = 0.008157 C = 0.006610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.870660 B = 3431.937881 C = 4234.831476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C -0.170 4.170 3 C -0.030 4.030 4 N -0.469 5.469 5 C 0.002 3.998 6 C -0.157 4.157 7 C 0.288 3.712 8 H -0.047 1.047 9 C -0.496 4.496 10 H 0.054 0.946 11 C 0.017 3.983 12 N -0.928 5.928 13 Si 0.957 3.043 14 H -0.276 1.276 15 H -0.282 1.282 16 H -0.271 1.271 17 N -0.693 5.693 18 C 0.059 3.941 19 C -0.026 4.026 20 C 0.098 3.902 21 C -0.115 4.115 22 C -0.050 4.050 23 H 0.046 0.954 24 H 0.039 0.961 25 H 0.068 0.932 26 H 0.263 0.737 27 H 0.347 0.653 28 H 0.004 0.996 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.072 0.928 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.128 0.872 35 H 0.084 0.916 36 H 0.094 0.906 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.440 15.470 1.538 17.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.177 4.177 3 C -0.142 4.142 4 N -0.146 5.146 5 C -0.108 4.108 6 C -0.164 4.164 7 C 0.180 3.820 8 H -0.030 1.030 9 C -0.535 4.535 10 H 0.072 0.928 11 C -0.181 4.181 12 N -0.570 5.570 13 Si 0.783 3.217 14 H -0.202 1.202 15 H -0.207 1.207 16 H -0.196 1.196 17 N -0.327 5.327 18 C -0.072 4.072 19 C -0.064 4.064 20 C -0.021 4.021 21 C -0.153 4.153 22 C -0.088 4.088 23 H 0.065 0.935 24 H 0.058 0.942 25 H 0.087 0.913 26 H 0.072 0.928 27 H 0.168 0.832 28 H 0.022 0.978 29 H 0.103 0.897 30 H 0.104 0.896 31 H 0.091 0.909 32 H 0.109 0.891 33 H 0.112 0.888 34 H 0.146 0.854 35 H 0.103 0.897 36 H 0.112 0.888 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 8.043 15.829 1.060 17.786 hybrid contribution -1.083 -1.480 0.342 1.866 sum 6.960 14.348 1.402 16.009 Atomic orbital electron populations 1.19920 0.90534 1.00575 1.00344 1.18774 0.95808 0.90970 1.12191 1.21927 0.84757 0.95955 1.11589 1.45136 1.08616 1.04060 1.56813 1.20075 0.96626 0.81394 1.12714 1.19741 0.92397 0.95544 1.08739 1.17260 0.87928 0.85291 0.91514 1.03013 1.21265 1.16116 0.93771 1.22357 0.92769 1.25734 0.99070 0.95842 0.97431 1.69823 1.44311 1.00338 1.42478 0.85626 0.79604 0.76939 0.79506 1.20185 1.20710 1.19592 1.60762 1.04838 1.11364 1.55708 1.21926 0.94757 0.96566 0.93953 1.20148 0.92837 0.91770 1.01646 1.22638 0.92944 0.82968 1.03573 1.22678 0.92374 0.97072 1.03130 1.20770 0.98923 0.85688 1.03400 0.93489 0.94214 0.91283 0.92781 0.83208 0.97771 0.89670 0.89587 0.90915 0.89148 0.88798 0.85376 0.89709 0.88774 0.89173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.36 8.86 71.24 0.63 -1.73 16 2 C -0.17 -7.71 5.92 -20.12 -0.12 -7.83 16 3 C -0.03 -1.09 7.35 41.42 0.30 -0.78 16 4 N -0.47 -16.44 3.59 -489.29 -1.75 -18.19 16 5 C 0.00 0.10 7.13 41.28 0.29 0.39 16 6 C -0.16 -7.97 5.48 -20.11 -0.11 -8.08 16 7 C 0.29 16.42 2.70 43.36 0.12 16.54 16 8 H -0.05 -3.03 8.14 -2.38 -0.02 -3.05 16 9 C -0.50 -29.49 7.63 25.60 0.20 -29.29 16 10 H 0.05 3.24 6.31 -2.91 -0.02 3.22 16 11 C 0.02 1.00 5.39 84.66 0.46 1.46 16 12 N -0.93 -55.16 11.65 21.45 0.25 -54.91 16 13 Si 0.96 45.91 29.54 68.60 2.03 47.94 16 14 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 15 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 16 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 17 N -0.69 -36.57 6.39 -497.25 -3.18 -39.74 16 18 C 0.06 2.48 6.51 86.47 0.56 3.04 16 19 C -0.03 -0.95 6.52 30.09 0.20 -0.76 16 20 C 0.10 2.11 7.77 86.66 0.67 2.79 16 21 C -0.12 -1.83 7.14 31.53 0.23 -1.61 16 22 C -0.05 -1.13 6.85 30.60 0.21 -0.92 16 23 H 0.05 1.96 7.78 -2.39 -0.02 1.94 16 24 H 0.04 1.85 7.67 -2.39 -0.02 1.83 16 25 H 0.07 2.34 8.14 -2.38 -0.02 2.32 16 26 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 27 H 0.35 19.42 7.06 -89.69 -0.63 18.79 16 28 H 0.00 0.18 8.07 -2.38 -0.02 0.16 16 29 H 0.08 3.07 8.14 -2.39 -0.02 3.05 16 30 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 31 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 32 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.13 1.07 8.14 -2.39 -0.02 1.06 16 35 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -72.87 292.51 1.41 -71.46 By element: Atomic # 1 Polarization: 19.79 SS G_CDS: 0.43 Total: 20.22 kcal Atomic # 6 Polarization: -30.41 SS G_CDS: 3.64 Total: -26.78 kcal Atomic # 7 Polarization: -108.16 SS G_CDS: -4.68 Total: -112.84 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.94 kcal Total: -72.87 1.41 -71.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259687122.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.908 kcal (2) G-P(sol) polarization free energy of solvation -72.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds