Wall clock time and date at job start Mon Mar 30 2020 03:41:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86806 * 119.99793 * 2 1 4 4 H 1.48497 * 109.46629 * 239.99645 * 3 2 1 5 5 H 1.48501 * 109.46910 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47424 * 119.99746 * 3 2 1 7 7 C 1.37873 * 120.00347 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00642 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99964 * 0.02562 * 7 2 1 10 10 H 1.08997 * 110.87785 * 62.39018 * 9 7 2 11 11 C 1.55142 * 110.98975 * 298.54483 * 9 7 2 12 12 C 1.54327 * 103.01695 * 206.21674 * 11 9 7 13 13 N 1.47443 * 107.23372 * 22.28445 * 12 11 9 14 14 C 1.46897 * 111.00119 * 123.25713 * 13 12 11 15 15 C 1.53005 * 109.47211 * 69.86962 * 14 13 12 16 16 C 1.50696 * 109.47247 * 179.97438 * 15 14 13 17 17 C 1.38675 * 120.41610 * 90.00378 * 16 15 14 18 18 C 1.38631 * 118.41910 * 180.23230 * 17 16 15 19 19 C 1.38221 * 119.16046 * 359.47670 * 18 17 16 20 20 N 1.31852 * 120.76598 * 0.53648 * 19 18 17 21 21 C 1.31884 * 121.72537 * 359.73739 * 20 19 18 22 22 C 1.47847 * 108.56642 * 0.98734 * 13 12 11 23 23 H 0.97000 * 120.00421 * 0.02562 * 1 2 3 24 24 H 1.08999 * 110.71060 * 87.83486 * 11 9 7 25 25 H 1.08999 * 110.70553 * 324.59805 * 11 9 7 26 26 H 1.08993 * 109.88751 * 262.87133 * 12 11 9 27 27 H 1.09002 * 109.88501 * 141.69023 * 12 11 9 28 28 H 1.09004 * 109.47207 * 309.87590 * 14 13 12 29 29 H 1.09003 * 109.47420 * 189.87222 * 14 13 12 30 30 H 1.09004 * 109.46523 * 60.00209 * 15 14 13 31 31 H 1.08994 * 109.47390 * 300.00462 * 15 14 13 32 32 H 1.08002 * 120.78673 * 359.95120 * 17 16 15 33 33 H 1.07999 * 120.41498 * 179.74544 * 18 17 16 34 34 H 1.08000 * 119.61806 * 180.27447 * 19 18 17 35 35 H 1.08006 * 119.61986 * 179.97438 * 21 20 19 36 36 H 1.09002 * 110.37295 * 94.73782 * 22 13 12 37 37 H 1.09003 * 110.36922 * 217.07675 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6485 -2.5997 -0.9021 11 6 0.3734 -2.6341 1.2726 12 6 0.2524 -4.1622 1.4510 13 7 1.3907 -4.7761 0.7430 14 6 2.1840 -5.6159 1.6503 15 6 1.3805 -6.8631 2.0242 16 6 2.1945 -7.7250 2.9545 17 6 2.1127 -7.5479 4.3274 18 6 2.8835 -8.3604 5.1445 19 6 3.6938 -9.3205 4.5682 20 7 3.7464 -9.4607 3.2582 21 6 3.0315 -8.7021 2.4503 22 6 2.2180 -3.6990 0.1588 23 1 -0.4851 0.8400 -0.0004 24 1 -0.6074 -2.1858 1.1136 25 1 0.8692 -2.1837 2.1325 26 1 -0.6852 -4.5127 1.0198 27 1 0.2938 -4.4163 2.5101 28 1 2.4212 -5.0525 2.5528 29 1 3.1080 -5.9141 1.1548 30 1 1.1433 -7.4266 1.1217 31 1 0.4565 -6.5650 2.5197 32 1 1.4674 -6.7918 4.7498 33 1 2.8479 -8.2474 6.2180 34 1 4.2939 -9.9604 5.1980 35 1 3.1012 -8.8461 1.3821 36 1 3.0358 -3.4412 0.8318 37 1 2.6068 -4.0038 -0.8129 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259688458.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:45 Heat of formation + Delta-G solvation = 26.546463 kcal Electronic energy + Delta-G solvation = -17142.284853 eV Core-core repulsion = 14497.756126 eV Total energy + Delta-G solvation = -2644.528728 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.27670 -38.16330 -34.57486 -32.84712 -32.06749 -30.47938 -28.24913 -27.66300 -24.53231 -23.65224 -23.25010 -21.48010 -19.74345 -19.43497 -17.18490 -16.51356 -16.43888 -15.49952 -15.07699 -14.70576 -14.32802 -14.01131 -13.44710 -13.23468 -13.16534 -12.92056 -12.45079 -12.20827 -11.75131 -11.38648 -11.33407 -11.04336 -10.83849 -10.67341 -10.46639 -10.20287 -9.87521 -9.63912 -9.52917 -9.27673 -8.99026 -8.86582 -8.41033 -7.65171 -6.04169 -4.07860 0.99890 1.17087 3.29996 3.34809 3.37286 3.69459 4.30438 4.40140 4.55359 4.70634 4.86349 4.90524 5.04026 5.24890 5.29015 5.41291 5.47628 5.63923 5.77058 5.81521 5.92384 5.99783 6.12056 6.20736 6.25814 6.33192 6.47873 6.52380 6.61570 6.82447 7.11910 7.16566 7.62764 7.66405 7.74177 7.85558 7.86450 8.00033 8.40148 8.93907 9.56552 11.05329 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.044140 B = 0.004019 C = 0.003963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.192953 B = 6965.021925 C = 7064.492605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.064 3.936 3 Si 0.891 3.109 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.517 4.517 8 H 0.055 0.945 9 C 0.049 3.951 10 H 0.037 0.963 11 C -0.117 4.117 12 C 0.037 3.963 13 N -0.535 5.535 14 C 0.060 3.940 15 C -0.074 4.074 16 C -0.123 4.123 17 C -0.075 4.075 18 C -0.172 4.172 19 C 0.085 3.915 20 N -0.486 5.486 21 C 0.100 3.900 22 C 0.046 3.954 23 H 0.261 0.739 24 H 0.073 0.927 25 H 0.046 0.954 26 H 0.063 0.937 27 H 0.035 0.965 28 H 0.030 0.970 29 H 0.067 0.933 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.133 0.867 33 H 0.132 0.868 34 H 0.152 0.848 35 H 0.156 0.844 36 H 0.035 0.965 37 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.774 -14.551 8.361 17.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.138 4.138 3 Si 0.719 3.281 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.204 1.204 7 C -0.555 4.555 8 H 0.073 0.927 9 C 0.030 3.970 10 H 0.055 0.945 11 C -0.156 4.156 12 C -0.090 4.090 13 N -0.259 5.259 14 C -0.069 4.069 15 C -0.112 4.112 16 C -0.125 4.125 17 C -0.101 4.101 18 C -0.191 4.191 19 C -0.072 4.072 20 N -0.194 5.194 21 C -0.057 4.057 22 C -0.081 4.081 23 H 0.070 0.930 24 H 0.092 0.908 25 H 0.065 0.935 26 H 0.081 0.919 27 H 0.054 0.946 28 H 0.048 0.952 29 H 0.086 0.914 30 H 0.102 0.898 31 H 0.093 0.907 32 H 0.151 0.849 33 H 0.150 0.850 34 H 0.169 0.831 35 H 0.173 0.827 36 H 0.053 0.947 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.984 -15.397 7.608 17.432 hybrid contribution 0.207 2.141 1.205 2.465 sum 3.190 -13.256 8.814 16.235 Atomic orbital electron populations 1.69950 1.05886 1.26626 1.50166 1.24959 0.94847 0.99018 0.94935 0.86674 0.79617 0.83177 0.78622 1.20202 1.21281 1.20358 1.21011 0.92763 0.90377 1.51385 0.92670 1.19726 0.92158 0.91069 0.94088 0.94503 1.22684 1.02197 0.90824 0.99888 1.22945 0.94043 0.96894 0.95167 1.63592 1.09327 1.21702 1.31267 1.22142 0.96169 0.93353 0.95213 1.20583 0.97418 0.95220 0.97994 1.21029 0.98746 0.97777 0.94975 1.21573 0.97535 0.97863 0.93131 1.22136 0.98360 0.97455 1.01188 1.22713 0.96735 0.96404 0.91306 1.67680 1.21052 1.25494 1.05155 1.22737 0.91761 0.91191 0.99995 1.23171 0.96059 0.91250 0.97571 0.92963 0.90822 0.93507 0.91894 0.94634 0.95173 0.91420 0.89829 0.90738 0.84912 0.84959 0.83053 0.82691 0.94658 0.92012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.27 12.12 55.43 0.67 -24.60 16 2 C 0.06 1.77 5.34 -17.82 -0.10 1.68 16 3 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.52 -14.12 8.55 -34.44 -0.29 -14.42 16 8 H 0.06 1.49 7.79 -52.49 -0.41 1.08 16 9 C 0.05 1.21 2.96 -89.63 -0.26 0.95 16 10 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 11 C -0.12 -2.71 5.64 -24.90 -0.14 -2.85 16 12 C 0.04 0.70 6.21 -2.83 -0.02 0.68 16 13 N -0.53 -9.89 5.16 -231.24 -1.19 -11.08 16 14 C 0.06 0.91 4.52 -3.82 -0.02 0.90 16 15 C -0.07 -0.92 5.40 -27.88 -0.15 -1.07 16 16 C -0.12 -1.44 5.15 -104.48 -0.54 -1.98 16 17 C -0.07 -0.81 9.86 -39.28 -0.39 -1.19 16 18 C -0.17 -1.64 10.11 -39.44 -0.40 -2.04 16 19 C 0.09 0.88 11.18 -17.55 -0.20 0.69 16 20 N -0.49 -6.08 10.36 -13.25 -0.14 -6.22 16 21 C 0.10 1.19 10.86 -17.55 -0.19 1.00 16 22 C 0.05 0.98 6.13 -2.30 -0.01 0.97 16 23 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 24 H 0.07 1.83 7.53 -51.93 -0.39 1.44 16 25 H 0.05 1.13 8.03 -51.93 -0.42 0.71 16 26 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 27 H 0.04 0.60 6.91 -51.93 -0.36 0.24 16 28 H 0.03 0.48 7.96 -51.93 -0.41 0.07 16 29 H 0.07 1.01 8.07 -51.93 -0.42 0.59 16 30 H 0.08 1.01 8.09 -51.93 -0.42 0.59 16 31 H 0.07 0.92 7.10 -51.93 -0.37 0.55 16 32 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 33 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 34 H 0.15 1.14 8.06 -52.49 -0.42 0.71 16 35 H 0.16 1.60 8.06 -52.48 -0.42 1.18 16 36 H 0.04 0.75 7.70 -51.93 -0.40 0.35 16 37 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 304.56 15.07 4.59 4.59 Total: -1.00 -29.22 304.56 -9.49 -38.71 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: -5.69 Total: -0.84 kcal Atomic # 6 Polarization: -13.98 SS G_CDS: -2.71 Total: -16.68 kcal Atomic # 7 Polarization: -41.24 SS G_CDS: -0.66 Total: -41.90 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -29.22 -9.49 -38.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259688458.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.255 kcal (2) G-P(sol) polarization free energy of solvation -29.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds