Wall clock time and date at job start Mon Mar 30 2020 03:41:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86806 * 119.99793 * 2 1 4 4 H 1.48497 * 109.46629 * 239.99645 * 3 2 1 5 5 H 1.48501 * 109.46910 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47424 * 119.99746 * 3 2 1 7 7 C 1.37873 * 120.00347 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00642 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99964 * 0.02562 * 7 2 1 10 10 H 1.08997 * 110.87785 * 62.39018 * 9 7 2 11 11 C 1.55142 * 110.98975 * 298.54483 * 9 7 2 12 12 C 1.54327 * 103.01695 * 206.21674 * 11 9 7 13 13 N 1.47443 * 107.23372 * 22.28445 * 12 11 9 14 14 C 1.46897 * 111.00119 * 123.25713 * 13 12 11 15 15 C 1.53005 * 109.47211 * 69.86962 * 14 13 12 16 16 C 1.50696 * 109.47247 * 179.97438 * 15 14 13 17 17 C 1.38675 * 120.41610 * 90.00378 * 16 15 14 18 18 C 1.38631 * 118.41910 * 180.23230 * 17 16 15 19 19 C 1.38221 * 119.16046 * 359.47670 * 18 17 16 20 20 N 1.31852 * 120.76598 * 0.53648 * 19 18 17 21 21 C 1.31884 * 121.72537 * 359.73739 * 20 19 18 22 22 C 1.47847 * 108.56642 * 0.98734 * 13 12 11 23 23 H 0.97000 * 120.00421 * 0.02562 * 1 2 3 24 24 H 1.08999 * 110.71060 * 87.83486 * 11 9 7 25 25 H 1.08999 * 110.70553 * 324.59805 * 11 9 7 26 26 H 1.08993 * 109.88751 * 262.87133 * 12 11 9 27 27 H 1.09002 * 109.88501 * 141.69023 * 12 11 9 28 28 H 1.09004 * 109.47207 * 309.87590 * 14 13 12 29 29 H 1.09003 * 109.47420 * 189.87222 * 14 13 12 30 30 H 1.09004 * 109.46523 * 60.00209 * 15 14 13 31 31 H 1.08994 * 109.47390 * 300.00462 * 15 14 13 32 32 H 1.08002 * 120.78673 * 359.95120 * 17 16 15 33 33 H 1.07999 * 120.41498 * 179.74544 * 18 17 16 34 34 H 1.08000 * 119.61806 * 180.27447 * 19 18 17 35 35 H 1.08006 * 119.61986 * 179.97438 * 21 20 19 36 36 H 1.09002 * 110.37295 * 94.73782 * 22 13 12 37 37 H 1.09003 * 110.36922 * 217.07675 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6485 -2.5997 -0.9021 11 6 0.3734 -2.6341 1.2726 12 6 0.2524 -4.1622 1.4510 13 7 1.3907 -4.7761 0.7430 14 6 2.1840 -5.6159 1.6503 15 6 1.3805 -6.8631 2.0242 16 6 2.1945 -7.7250 2.9545 17 6 2.1127 -7.5479 4.3274 18 6 2.8835 -8.3604 5.1445 19 6 3.6938 -9.3205 4.5682 20 7 3.7464 -9.4607 3.2582 21 6 3.0315 -8.7021 2.4503 22 6 2.2180 -3.6990 0.1588 23 1 -0.4851 0.8400 -0.0004 24 1 -0.6074 -2.1858 1.1136 25 1 0.8692 -2.1837 2.1325 26 1 -0.6852 -4.5127 1.0198 27 1 0.2938 -4.4163 2.5101 28 1 2.4212 -5.0525 2.5528 29 1 3.1080 -5.9141 1.1548 30 1 1.1433 -7.4266 1.1217 31 1 0.4565 -6.5650 2.5197 32 1 1.4674 -6.7918 4.7498 33 1 2.8479 -8.2474 6.2180 34 1 4.2939 -9.9604 5.1980 35 1 3.1012 -8.8461 1.3821 36 1 3.0358 -3.4412 0.8318 37 1 2.6068 -4.0038 -0.8129 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259688458.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:45 Heat of formation + Delta-G solvation = 9.089447 kcal Electronic energy + Delta-G solvation = -17143.041846 eV Core-core repulsion = 14497.756126 eV Total energy + Delta-G solvation = -2645.285721 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.11331 -39.74008 -35.90466 -34.52591 -32.97096 -31.94469 -29.99733 -28.95604 -26.33912 -24.53663 -24.46043 -22.56924 -21.49629 -21.05377 -18.45704 -17.95510 -17.39672 -16.84269 -16.56872 -16.40273 -15.59991 -15.00710 -14.74172 -14.47763 -14.31172 -14.05618 -13.94945 -13.80539 -13.12566 -13.01865 -12.82095 -12.69408 -12.55837 -12.31253 -11.93725 -11.79219 -11.49764 -11.16018 -10.90221 -10.68550 -10.50419 -10.36106 -9.85921 -9.17533 -8.14667 -6.25635 0.19502 0.36389 1.41107 1.42238 1.49998 2.41376 2.85928 3.13998 3.18914 3.61386 3.90485 3.97089 4.07835 4.11441 4.13402 4.23150 4.34474 4.47183 4.52702 4.61753 4.67235 4.69456 4.85371 4.90953 4.99308 5.04850 5.17133 5.22697 5.26326 5.34301 5.43902 5.58787 5.81570 5.82507 5.91189 6.04586 6.31572 6.36054 6.83304 7.05156 7.42325 8.94056 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.044140 B = 0.004019 C = 0.003963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.192953 B = 6965.021925 C = 7064.492605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.015 3.985 3 Si 0.955 3.045 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.271 1.271 7 C -0.538 4.538 8 H 0.053 0.947 9 C 0.037 3.963 10 H 0.005 0.995 11 C -0.109 4.109 12 C 0.049 3.951 13 N -0.534 5.534 14 C 0.062 3.938 15 C -0.061 4.061 16 C -0.133 4.133 17 C -0.084 4.084 18 C -0.168 4.168 19 C 0.078 3.922 20 N -0.512 5.512 21 C 0.087 3.913 22 C 0.059 3.941 23 H 0.261 0.739 24 H 0.048 0.952 25 H 0.031 0.969 26 H 0.072 0.928 27 H 0.060 0.940 28 H 0.025 0.975 29 H 0.071 0.929 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.146 0.854 33 H 0.162 0.838 34 H 0.178 0.822 35 H 0.163 0.837 36 H 0.032 0.968 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.488 -15.373 9.752 18.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.184 4.184 3 Si 0.781 3.219 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.576 4.576 8 H 0.072 0.928 9 C 0.018 3.982 10 H 0.023 0.977 11 C -0.148 4.148 12 C -0.079 4.079 13 N -0.258 5.258 14 C -0.066 4.066 15 C -0.099 4.099 16 C -0.135 4.135 17 C -0.110 4.110 18 C -0.187 4.187 19 C -0.078 4.078 20 N -0.221 5.221 21 C -0.069 4.069 22 C -0.069 4.069 23 H 0.070 0.930 24 H 0.067 0.933 25 H 0.049 0.951 26 H 0.090 0.910 27 H 0.079 0.921 28 H 0.044 0.956 29 H 0.090 0.910 30 H 0.105 0.895 31 H 0.096 0.904 32 H 0.163 0.837 33 H 0.180 0.820 34 H 0.195 0.805 35 H 0.180 0.820 36 H 0.050 0.950 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.704 -16.236 9.000 18.930 hybrid contribution 0.000 2.355 0.803 2.488 sum 3.704 -13.881 9.803 17.393 Atomic orbital electron populations 1.70076 1.07220 1.27387 1.50822 1.25745 0.95687 1.02403 0.94561 0.85657 0.78417 0.78996 0.78870 1.19568 1.20880 1.19668 1.21372 0.92959 0.91817 1.51438 0.92830 1.19696 0.92950 0.92086 0.93483 0.97701 1.22473 1.00123 0.93927 0.98297 1.22837 0.94680 0.93503 0.96878 1.63594 1.09234 1.20635 1.32367 1.22208 0.96441 0.93758 0.94241 1.20413 0.97094 0.93929 0.98469 1.20942 0.99162 0.98028 0.95389 1.21854 0.97832 0.98320 0.92944 1.22463 0.97193 0.96396 1.02649 1.23239 0.96849 0.96798 0.90956 1.67699 1.21832 1.26233 1.06333 1.22907 0.91984 0.91454 1.00552 1.22931 0.95252 0.90575 0.98106 0.92970 0.93298 0.95061 0.91005 0.92133 0.95633 0.91044 0.89457 0.90365 0.83660 0.82021 0.80522 0.82021 0.94979 0.91571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.15 12.12 21.45 0.26 -52.89 16 2 C 0.02 0.86 5.34 84.65 0.45 1.31 16 3 Si 0.96 43.51 29.54 68.60 2.03 45.53 16 4 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 5 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 6 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 7 C -0.54 -29.84 8.55 25.60 0.22 -29.62 16 8 H 0.05 2.91 7.79 -2.91 -0.02 2.89 16 9 C 0.04 1.88 2.96 -10.15 -0.03 1.85 16 10 H 0.00 0.27 8.14 -2.39 -0.02 0.25 16 11 C -0.11 -5.13 5.64 31.78 0.18 -4.95 16 12 C 0.05 1.78 6.21 86.65 0.54 2.32 16 13 N -0.53 -19.13 5.16 -885.51 -4.57 -23.70 16 14 C 0.06 1.77 4.52 86.31 0.39 2.16 16 15 C -0.06 -1.39 5.40 29.85 0.16 -1.22 16 16 C -0.13 -2.86 5.15 -19.77 -0.10 -2.96 16 17 C -0.08 -1.58 9.86 22.47 0.22 -1.36 16 18 C -0.17 -2.71 10.11 22.36 0.23 -2.49 16 19 C 0.08 1.43 11.18 84.69 0.95 2.38 16 20 N -0.51 -12.04 10.36 -195.84 -2.03 -14.07 16 21 C 0.09 1.97 10.86 84.67 0.92 2.89 16 22 C 0.06 2.47 6.13 86.77 0.53 3.01 16 23 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 24 H 0.05 2.50 7.53 -2.39 -0.02 2.48 16 25 H 0.03 1.52 8.03 -2.39 -0.02 1.50 16 26 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 27 H 0.06 1.92 6.91 -2.39 -0.02 1.91 16 28 H 0.03 0.77 7.96 -2.38 -0.02 0.75 16 29 H 0.07 2.01 8.07 -2.39 -0.02 1.99 16 30 H 0.09 1.93 8.09 -2.38 -0.02 1.91 16 31 H 0.08 1.73 7.10 -2.39 -0.02 1.71 16 32 H 0.15 2.32 8.06 -2.91 -0.02 2.30 16 33 H 0.16 1.59 8.06 -2.91 -0.02 1.57 16 34 H 0.18 2.14 8.06 -2.91 -0.02 2.12 16 35 H 0.16 3.19 8.06 -2.91 -0.02 3.16 16 36 H 0.03 1.36 7.70 -2.39 -0.02 1.34 16 37 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 Total: -1.00 -62.98 304.56 1.37 -61.61 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: 1.03 Total: 10.22 kcal Atomic # 6 Polarization: -31.35 SS G_CDS: 4.65 Total: -26.70 kcal Atomic # 7 Polarization: -84.33 SS G_CDS: -6.34 Total: -90.66 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.53 kcal Total: -62.98 1.37 -61.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259688458.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.697 kcal (2) G-P(sol) polarization free energy of solvation -62.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds