Wall clock time and date at job start Mon Mar 30 2020 04:15:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.48558 * 110.99741 * 2 1 4 4 C 1.54387 * 104.59559 * 200.95834 * 3 2 1 5 5 C 1.54263 * 105.05624 * 23.85290 * 4 3 2 6 6 H 1.09006 * 110.32047 * 241.00242 * 5 4 3 7 7 C 1.50699 * 110.32385 * 118.90027 * 5 4 3 8 8 C 1.38678 * 120.78569 * 301.42266 * 7 5 4 9 9 C 1.38175 * 119.15981 * 179.97438 * 8 7 5 10 10 N 1.31882 * 120.76856 * 0.02562 * 9 8 7 11 11 C 1.31851 * 121.72560 * 359.97438 * 10 9 8 12 12 C 1.50706 * 119.62134 * 180.02562 * 11 10 9 13 13 C 1.50699 * 109.46817 * 304.99771 * 12 11 10 14 14 H 1.08003 * 119.99962 * 359.97438 * 13 12 11 15 15 C 1.37874 * 120.00270 * 180.02562 * 13 12 11 16 16 N 1.31522 * 119.99835 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 120.00390 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.46950 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47074 * 119.99834 * 17 15 13 20 20 H 1.48505 * 109.46997 * 239.99828 * 17 15 13 21 21 C 1.38231 * 120.76211 * 0.27254 * 11 10 9 22 22 C 1.48721 * 111.01768 * 244.48986 * 2 1 3 23 23 H 1.08998 * 109.46958 * 60.12851 * 1 2 3 24 24 H 1.09006 * 109.47101 * 180.12355 * 1 2 3 25 25 H 1.09000 * 109.47261 * 300.12919 * 1 2 3 26 26 H 1.08998 * 110.41439 * 82.17706 * 3 2 1 27 27 H 1.08998 * 110.51344 * 319.78395 * 3 2 1 28 28 H 1.08999 * 110.32296 * 264.96139 * 4 3 2 29 29 H 1.08999 * 110.32188 * 142.74530 * 4 3 2 30 30 H 1.07997 * 120.42163 * 0.02562 * 8 7 5 31 31 H 1.08007 * 119.61788 * 179.97438 * 9 8 7 32 32 H 1.09000 * 109.47318 * 64.99150 * 12 11 10 33 33 H 1.09000 * 109.47161 * 184.99781 * 12 11 10 34 34 H 0.96992 * 120.00038 * 179.97438 * 16 15 13 35 35 H 1.08002 * 120.41705 * 179.70986 * 21 11 10 36 36 H 1.09002 * 110.38611 * 40.24273 * 22 2 1 37 37 H 1.08995 * 110.51028 * 277.75475 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 2.0014 1.3869 0.0000 4 6 3.4433 1.2502 -0.5344 5 6 3.4433 -0.0539 -1.3585 6 1 4.1497 -0.7686 -0.9361 7 6 3.7896 0.2355 -2.7963 8 6 3.0199 1.1091 -3.5498 9 6 3.3683 1.3505 -4.8649 10 7 4.4177 0.7611 -5.4040 11 6 5.1720 -0.0749 -4.7178 12 6 6.3608 -0.7216 -5.3811 13 6 5.9136 -1.4282 -6.6347 14 1 4.8727 -1.4111 -6.9222 15 6 6.8332 -2.0974 -7.4142 16 7 8.1007 -2.1187 -7.0638 17 14 6.2791 -2.9728 -8.9686 18 1 4.8141 -2.7994 -9.1389 19 1 6.9858 -2.3959 -10.1403 20 1 6.5967 -4.4196 -8.8620 21 6 4.8820 -0.3689 -3.3986 22 6 2.0025 -0.5979 -1.2529 23 1 -0.3633 0.5118 -0.8911 24 1 -0.3633 -1.0277 0.0022 25 1 -0.3634 0.5158 0.8888 26 1 2.0078 1.7917 1.0120 27 1 1.4105 2.0229 -0.6591 28 1 4.1483 1.1749 0.2935 29 1 3.6936 2.0996 -1.1699 30 1 2.1596 1.5951 -3.1140 31 1 2.7738 2.0291 -5.4587 32 1 7.0945 0.0428 -5.6369 33 1 6.8102 -1.4425 -4.6982 34 1 8.7475 -2.5898 -7.6120 35 1 5.5009 -1.0580 -2.8432 36 1 1.4106 -0.2753 -2.1095 37 1 2.0108 -1.6856 -1.1836 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259726889.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:19 Heat of formation + Delta-G solvation = 28.226483 kcal Electronic energy + Delta-G solvation = -17286.711282 eV Core-core repulsion = 14642.255405 eV Total energy + Delta-G solvation = -2644.455876 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.12607 -38.55456 -34.02711 -33.17074 -31.27639 -30.75308 -28.62197 -27.52948 -25.80704 -23.69664 -22.70084 -21.67137 -21.26663 -19.30596 -16.66975 -16.28982 -16.10734 -15.34159 -15.10198 -14.76414 -14.46497 -14.27090 -13.58337 -13.41758 -12.98612 -12.64233 -12.32486 -12.11647 -11.92267 -11.67329 -11.51986 -11.39595 -11.27125 -11.13376 -10.71314 -10.65811 -10.54887 -9.78546 -9.38500 -9.00707 -8.70090 -8.60202 -8.40575 -8.11151 -6.00462 -4.00846 1.79733 1.81585 3.33686 3.40765 3.46934 3.82793 4.35035 4.49818 4.51922 4.71519 4.78160 5.04194 5.09399 5.15315 5.22376 5.24244 5.34264 5.37268 5.47491 5.55516 5.60630 5.63950 5.73446 5.82079 5.84165 5.98042 6.07081 6.25451 6.43514 6.51599 6.65661 6.78034 6.84602 7.34351 7.53226 7.56384 7.96664 8.32919 8.88265 9.02840 9.61436 11.10915 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.039534 B = 0.004514 C = 0.004471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.083657 B = 6200.989730 C = 6260.812979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.518 5.518 3 C 0.032 3.968 4 C -0.116 4.116 5 C -0.051 4.051 6 H 0.090 0.910 7 C -0.039 4.039 8 C -0.203 4.203 9 C 0.097 3.903 10 N -0.474 5.474 11 C 0.178 3.822 12 C 0.057 3.943 13 C -0.498 4.498 14 H 0.060 0.940 15 C 0.055 3.945 16 N -0.898 5.898 17 Si 0.897 3.103 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.284 1.284 21 C -0.179 4.179 22 C 0.040 3.960 23 H 0.028 0.972 24 H 0.069 0.931 25 H 0.067 0.933 26 H 0.080 0.920 27 H 0.043 0.957 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.116 0.884 31 H 0.143 0.857 32 H 0.042 0.958 33 H 0.036 0.964 34 H 0.261 0.739 35 H 0.128 0.872 36 H 0.052 0.948 37 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.514 6.088 14.000 19.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 N -0.241 5.241 3 C -0.096 4.096 4 C -0.154 4.154 5 C -0.070 4.070 6 H 0.108 0.892 7 C -0.047 4.047 8 C -0.223 4.223 9 C -0.060 4.060 10 N -0.184 5.184 11 C 0.041 3.959 12 C 0.020 3.980 13 C -0.536 4.536 14 H 0.078 0.922 15 C -0.145 4.145 16 N -0.538 5.538 17 Si 0.725 3.275 18 H -0.198 1.198 19 H -0.209 1.209 20 H -0.211 1.211 21 C -0.199 4.199 22 C -0.088 4.088 23 H 0.047 0.953 24 H 0.088 0.912 25 H 0.086 0.914 26 H 0.098 0.902 27 H 0.062 0.938 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.134 0.866 31 H 0.160 0.840 32 H 0.060 0.940 33 H 0.054 0.946 34 H 0.070 0.930 35 H 0.146 0.854 36 H 0.070 0.930 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -11.988 5.889 13.557 19.031 hybrid contribution -0.855 -0.205 -0.721 1.137 sum -12.843 5.684 12.835 19.026 Atomic orbital electron populations 1.22503 0.88099 1.02258 1.00709 1.65405 1.08097 1.15330 1.35311 1.23144 0.95410 0.90106 1.00973 1.22404 0.96374 0.97240 0.99369 1.20846 0.97048 0.97683 0.91428 0.89170 1.20043 0.94674 0.95349 0.94644 1.21649 1.01889 1.02498 0.96305 1.22723 0.94061 0.96951 0.92313 1.67688 1.04574 1.08125 1.37967 1.22298 0.95159 0.89066 0.89368 1.18356 0.88797 0.95091 0.95765 1.21029 0.94700 1.31230 1.06664 0.92206 1.24990 0.94871 0.96631 0.98057 1.69960 1.01457 1.43432 1.38956 0.86452 0.78860 0.79117 0.83110 1.19751 1.20948 1.21070 1.22000 0.98674 1.02462 0.96776 1.23283 0.94191 1.00427 0.90902 0.95319 0.91214 0.91372 0.90156 0.93822 0.90654 0.90712 0.86603 0.83966 0.94021 0.94596 0.92967 0.85359 0.93017 0.89758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 9.53 60.07 0.57 0.69 16 2 N -0.52 -5.55 5.66 -238.08 -1.35 -6.90 16 3 C 0.03 0.31 6.49 -2.18 -0.01 0.29 16 4 C -0.12 -1.24 6.45 -25.34 -0.16 -1.40 16 5 C -0.05 -0.64 3.30 -90.39 -0.30 -0.94 16 6 H 0.09 1.11 7.99 -51.93 -0.41 0.70 16 7 C -0.04 -0.61 4.75 -104.32 -0.50 -1.10 16 8 C -0.20 -3.08 8.28 -39.44 -0.33 -3.41 16 9 C 0.10 1.70 11.18 -17.55 -0.20 1.51 16 10 N -0.47 -10.51 9.96 -9.47 -0.09 -10.60 16 11 C 0.18 4.01 6.13 -82.58 -0.51 3.51 16 12 C 0.06 1.50 5.37 -29.03 -0.16 1.34 16 13 C -0.50 -14.34 8.91 -34.44 -0.31 -14.64 16 14 H 0.06 1.75 7.68 -52.48 -0.40 1.35 16 15 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 16 N -0.90 -26.80 13.29 55.43 0.74 -26.06 16 17 Si 0.90 22.09 29.54 -169.99 -5.02 17.07 16 18 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 20 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 21 C -0.18 -3.35 9.38 -39.44 -0.37 -3.72 16 22 C 0.04 0.47 5.98 -2.09 -0.01 0.45 16 23 H 0.03 0.25 7.98 -51.93 -0.41 -0.17 16 24 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 25 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.04 0.41 7.98 -51.93 -0.41 -0.01 16 28 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.07 0.83 7.34 -51.93 -0.38 0.45 16 30 H 0.12 1.45 7.82 -52.49 -0.41 1.04 16 31 H 0.14 2.05 8.06 -52.48 -0.42 1.63 16 32 H 0.04 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.04 0.95 7.87 -51.93 -0.41 0.54 16 34 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 35 H 0.13 2.22 7.92 -52.49 -0.42 1.80 16 36 H 0.05 0.63 6.72 -51.93 -0.35 0.28 16 37 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 305.48 15.07 4.60 4.60 Total: -1.00 -31.12 305.48 -9.20 -40.32 By element: Atomic # 1 Polarization: 3.20 SS G_CDS: -5.71 Total: -2.50 kcal Atomic # 6 Polarization: -13.56 SS G_CDS: -2.37 Total: -15.93 kcal Atomic # 7 Polarization: -42.86 SS G_CDS: -0.70 Total: -43.56 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -31.12 -9.20 -40.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259726889.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.547 kcal (2) G-P(sol) polarization free energy of solvation -31.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds