Wall clock time and date at job start Mon Mar 30 2020 04:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.48558 * 110.99741 * 2 1 4 4 C 1.54387 * 104.59559 * 200.95834 * 3 2 1 5 5 C 1.54263 * 105.05624 * 23.85290 * 4 3 2 6 6 H 1.09006 * 110.32047 * 241.00242 * 5 4 3 7 7 C 1.50699 * 110.32385 * 118.90027 * 5 4 3 8 8 C 1.38678 * 120.78569 * 301.42266 * 7 5 4 9 9 C 1.38175 * 119.15981 * 179.97438 * 8 7 5 10 10 N 1.31882 * 120.76856 * 0.02562 * 9 8 7 11 11 C 1.31851 * 121.72560 * 359.97438 * 10 9 8 12 12 C 1.50706 * 119.62134 * 180.02562 * 11 10 9 13 13 C 1.50699 * 109.46817 * 304.99771 * 12 11 10 14 14 H 1.08003 * 119.99962 * 359.97438 * 13 12 11 15 15 C 1.37874 * 120.00270 * 180.02562 * 13 12 11 16 16 N 1.31522 * 119.99835 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 120.00390 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.46950 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47074 * 119.99834 * 17 15 13 20 20 H 1.48505 * 109.46997 * 239.99828 * 17 15 13 21 21 C 1.38231 * 120.76211 * 0.27254 * 11 10 9 22 22 C 1.48721 * 111.01768 * 244.48986 * 2 1 3 23 23 H 1.08998 * 109.46958 * 60.12851 * 1 2 3 24 24 H 1.09006 * 109.47101 * 180.12355 * 1 2 3 25 25 H 1.09000 * 109.47261 * 300.12919 * 1 2 3 26 26 H 1.08998 * 110.41439 * 82.17706 * 3 2 1 27 27 H 1.08998 * 110.51344 * 319.78395 * 3 2 1 28 28 H 1.08999 * 110.32296 * 264.96139 * 4 3 2 29 29 H 1.08999 * 110.32188 * 142.74530 * 4 3 2 30 30 H 1.07997 * 120.42163 * 0.02562 * 8 7 5 31 31 H 1.08007 * 119.61788 * 179.97438 * 9 8 7 32 32 H 1.09000 * 109.47318 * 64.99150 * 12 11 10 33 33 H 1.09000 * 109.47161 * 184.99781 * 12 11 10 34 34 H 0.96992 * 120.00038 * 179.97438 * 16 15 13 35 35 H 1.08002 * 120.41705 * 179.70986 * 21 11 10 36 36 H 1.09002 * 110.38611 * 40.24273 * 22 2 1 37 37 H 1.08995 * 110.51028 * 277.75475 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 2.0014 1.3869 0.0000 4 6 3.4433 1.2502 -0.5344 5 6 3.4433 -0.0539 -1.3585 6 1 4.1497 -0.7686 -0.9361 7 6 3.7896 0.2355 -2.7963 8 6 3.0199 1.1091 -3.5498 9 6 3.3683 1.3505 -4.8649 10 7 4.4177 0.7611 -5.4040 11 6 5.1720 -0.0749 -4.7178 12 6 6.3608 -0.7216 -5.3811 13 6 5.9136 -1.4282 -6.6347 14 1 4.8727 -1.4111 -6.9222 15 6 6.8332 -2.0974 -7.4142 16 7 8.1007 -2.1187 -7.0638 17 14 6.2791 -2.9728 -8.9686 18 1 4.8141 -2.7994 -9.1389 19 1 6.9858 -2.3959 -10.1403 20 1 6.5967 -4.4196 -8.8620 21 6 4.8820 -0.3689 -3.3986 22 6 2.0025 -0.5979 -1.2529 23 1 -0.3633 0.5118 -0.8911 24 1 -0.3633 -1.0277 0.0022 25 1 -0.3634 0.5158 0.8888 26 1 2.0078 1.7917 1.0120 27 1 1.4105 2.0229 -0.6591 28 1 4.1483 1.1749 0.2935 29 1 3.6936 2.0996 -1.1699 30 1 2.1596 1.5951 -3.1140 31 1 2.7738 2.0291 -5.4587 32 1 7.0945 0.0428 -5.6369 33 1 6.8102 -1.4425 -4.6982 34 1 8.7475 -2.5898 -7.6120 35 1 5.5009 -1.0580 -2.8432 36 1 1.4106 -0.2753 -2.1095 37 1 2.0108 -1.6856 -1.1836 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259726889.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:18 Heat of formation + Delta-G solvation = 8.029074 kcal Electronic energy + Delta-G solvation = -17287.587107 eV Core-core repulsion = 14642.255405 eV Total energy + Delta-G solvation = -2645.331702 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.41211 -39.61133 -35.62256 -34.76540 -33.05496 -31.77716 -29.57052 -29.41205 -26.67260 -25.56452 -24.05998 -23.04214 -22.06743 -20.57394 -18.56523 -17.64150 -17.37159 -16.65658 -16.46183 -16.26543 -15.66143 -15.25870 -15.01980 -14.52173 -14.30725 -13.97062 -13.86573 -13.54632 -13.21465 -12.99075 -12.78005 -12.63113 -12.56752 -12.41126 -12.27866 -12.08480 -11.73397 -11.53671 -11.51416 -10.63952 -10.35070 -10.08686 -9.71879 -9.46255 -8.21247 -6.30364 0.33917 0.44127 1.38265 1.39289 1.52855 2.40327 2.96229 3.02075 3.12412 3.61310 3.66583 3.70364 3.82404 4.05885 4.19818 4.24951 4.34388 4.38103 4.49545 4.57296 4.60679 4.73577 4.85953 4.86354 4.90945 5.01364 5.04173 5.08777 5.12404 5.19022 5.29423 5.46820 5.52387 5.72695 5.81931 5.94015 6.04471 6.17694 6.78442 7.33501 7.39413 8.90383 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.039534 B = 0.004514 C = 0.004471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.083657 B = 6200.989730 C = 6260.812979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 N -0.528 5.528 3 C 0.034 3.966 4 C -0.113 4.113 5 C -0.051 4.051 6 H 0.089 0.911 7 C -0.026 4.026 8 C -0.180 4.180 9 C 0.088 3.912 10 N -0.516 5.516 11 C 0.143 3.857 12 C 0.065 3.935 13 C -0.516 4.516 14 H 0.049 0.951 15 C 0.003 3.997 16 N -0.931 5.931 17 Si 0.966 3.034 18 H -0.270 1.270 19 H -0.276 1.276 20 H -0.273 1.273 21 C -0.186 4.186 22 C 0.043 3.957 23 H 0.032 0.968 24 H 0.071 0.929 25 H 0.081 0.919 26 H 0.094 0.906 27 H 0.052 0.948 28 H 0.083 0.917 29 H 0.073 0.927 30 H 0.155 0.845 31 H 0.174 0.826 32 H 0.008 0.992 33 H 0.021 0.979 34 H 0.266 0.734 35 H 0.133 0.867 36 H 0.050 0.950 37 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.947 6.634 15.068 22.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 N -0.252 5.252 3 C -0.094 4.094 4 C -0.151 4.151 5 C -0.070 4.070 6 H 0.107 0.893 7 C -0.034 4.034 8 C -0.200 4.200 9 C -0.069 4.069 10 N -0.226 5.226 11 C 0.007 3.993 12 C 0.027 3.973 13 C -0.554 4.554 14 H 0.067 0.933 15 C -0.195 4.195 16 N -0.571 5.571 17 Si 0.791 3.209 18 H -0.195 1.195 19 H -0.201 1.201 20 H -0.198 1.198 21 C -0.206 4.206 22 C -0.085 4.085 23 H 0.050 0.950 24 H 0.090 0.910 25 H 0.100 0.900 26 H 0.112 0.888 27 H 0.070 0.930 28 H 0.101 0.899 29 H 0.091 0.909 30 H 0.173 0.827 31 H 0.191 0.809 32 H 0.026 0.974 33 H 0.039 0.961 34 H 0.075 0.925 35 H 0.151 0.849 36 H 0.068 0.932 37 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -14.424 6.438 14.639 21.536 hybrid contribution -0.173 -0.302 -0.953 1.015 sum -14.597 6.136 13.686 20.929 Atomic orbital electron populations 1.22563 0.86847 1.02724 1.01539 1.65412 1.09351 1.15975 1.34424 1.23185 0.94445 0.89732 1.01994 1.22399 0.97607 0.95799 0.99255 1.20887 0.97761 0.98996 0.89354 0.89254 1.20348 0.92966 0.93936 0.96174 1.22007 1.01967 1.00873 0.95126 1.23267 0.93002 0.96818 0.93831 1.67501 1.06375 1.09185 1.39579 1.21725 0.95271 0.91346 0.90951 1.18052 0.90085 0.93944 0.95183 1.21268 0.94306 1.31893 1.07955 0.93268 1.25882 0.94878 0.97279 1.01418 1.70070 1.02541 1.44152 1.40377 0.85378 0.78410 0.78258 0.78859 1.19470 1.20126 1.19805 1.22005 1.00081 1.03046 0.95445 1.23208 0.93356 1.00397 0.91534 0.94956 0.91048 0.90022 0.88753 0.92974 0.89854 0.90874 0.82737 0.80877 0.97429 0.96062 0.92548 0.84922 0.93220 0.90047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 9.53 127.69 1.22 1.38 16 2 N -0.53 -9.59 5.66 -907.16 -5.13 -14.73 16 3 C 0.03 0.53 6.49 86.45 0.56 1.09 16 4 C -0.11 -2.06 6.45 31.49 0.20 -1.85 16 5 C -0.05 -1.15 3.30 -10.64 -0.04 -1.19 16 6 H 0.09 2.06 7.99 -2.38 -0.02 2.04 16 7 C -0.03 -0.76 4.75 -19.67 -0.09 -0.86 16 8 C -0.18 -4.95 8.28 22.36 0.19 -4.77 16 9 C 0.09 2.95 11.18 84.67 0.95 3.90 16 10 N -0.52 -23.26 9.96 -183.88 -1.83 -25.10 16 11 C 0.14 6.71 6.13 42.56 0.26 6.97 16 12 C 0.06 3.62 5.37 29.10 0.16 3.78 16 13 C -0.52 -30.94 8.91 25.60 0.23 -30.71 16 14 H 0.05 2.98 7.68 -2.91 -0.02 2.96 16 15 C 0.00 0.18 5.46 84.65 0.46 0.64 16 16 N -0.93 -57.17 13.29 21.45 0.28 -56.89 16 17 Si 0.97 45.99 29.54 68.60 2.03 48.01 16 18 H -0.27 -12.62 7.11 99.48 0.71 -11.92 16 19 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 20 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 21 C -0.19 -7.05 9.38 22.36 0.21 -6.84 16 22 C 0.04 0.89 5.98 86.42 0.52 1.41 16 23 H 0.03 0.44 7.98 -2.39 -0.02 0.42 16 24 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 25 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.05 0.74 7.98 -2.39 -0.02 0.72 16 28 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.07 1.38 7.34 -2.39 -0.02 1.36 16 30 H 0.16 3.10 7.82 -2.91 -0.02 3.08 16 31 H 0.17 4.54 8.06 -2.91 -0.02 4.52 16 32 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.02 1.20 7.87 -2.39 -0.02 1.18 16 34 H 0.27 15.21 8.31 -92.71 -0.77 14.43 16 35 H 0.13 4.75 7.92 -2.91 -0.02 4.72 16 36 H 0.05 1.05 6.72 -2.39 -0.02 1.03 16 37 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -69.40 305.48 1.20 -68.20 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: 1.03 Total: 7.54 kcal Atomic # 6 Polarization: -31.86 SS G_CDS: 4.82 Total: -27.04 kcal Atomic # 7 Polarization: -90.03 SS G_CDS: -6.68 Total: -96.71 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.01 kcal Total: -69.40 1.20 -68.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259726889.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.227 kcal (2) G-P(sol) polarization free energy of solvation -69.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds