Wall clock time and date at job start Mon Mar 30 2020 04:08:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36982 * 125.65273 * 2 1 4 4 C 1.34955 * 108.26036 * 179.97438 * 3 2 1 5 5 C 1.40280 * 107.16955 * 359.92479 * 4 3 2 6 6 C 1.35385 * 107.76070 * 0.15781 * 5 4 3 7 7 C 1.50894 * 123.24808 * 179.81573 * 6 5 4 8 8 H 1.08999 * 109.69852 * 103.28799 * 7 6 5 9 9 C 1.50696 * 109.70471 * 223.85501 * 7 6 5 10 10 H 1.08004 * 119.99975 * 24.90183 * 9 7 6 11 11 C 1.37874 * 120.00355 * 204.90282 * 9 7 6 12 12 N 1.31516 * 120.00370 * 184.98482 * 11 9 7 13 13 Si 1.86803 * 119.99769 * 4.98505 * 11 9 7 14 14 H 1.48506 * 109.47163 * 94.72518 * 13 11 9 15 15 H 1.48498 * 109.47230 * 214.72398 * 13 11 9 16 16 H 1.48496 * 109.47082 * 334.72538 * 13 11 9 17 17 N 1.47274 * 108.31241 * 343.57276 * 7 6 5 18 18 C 1.47046 * 111.47769 * 51.36348 * 17 7 6 19 19 C 1.50768 * 128.74569 * 180.33023 * 5 4 3 20 20 C 1.51368 * 110.27753 * 179.97438 * 4 3 2 21 21 C 1.54426 * 105.01669 * 17.00913 * 20 4 3 22 22 C 1.51354 * 141.45744 * 359.97438 * 3 2 1 23 23 H 1.08995 * 109.46908 * 264.28361 * 1 2 3 24 24 H 1.09003 * 109.46953 * 24.28399 * 1 2 3 25 25 H 1.08997 * 109.47169 * 144.28298 * 1 2 3 26 26 H 0.97003 * 120.00122 * 179.97438 * 12 11 9 27 27 H 1.00899 * 111.00436 * 175.73778 * 17 7 6 28 28 H 1.09003 * 109.43291 * 168.58048 * 18 17 7 29 29 H 1.08994 * 109.43377 * 48.64846 * 18 17 7 30 30 H 1.08998 * 109.79935 * 283.71233 * 19 5 4 31 31 H 1.09000 * 109.79644 * 44.57009 * 19 5 4 32 32 H 1.09001 * 110.33438 * 135.89759 * 20 4 3 33 33 H 1.09000 * 110.33206 * 258.02641 * 20 4 3 34 34 H 1.09001 * 110.93663 * 92.38199 * 21 20 4 35 35 H 1.08998 * 110.94075 * 216.04209 * 21 20 4 36 36 H 1.09000 * 110.32853 * 281.91281 * 22 3 2 37 37 H 1.08998 * 110.33030 * 44.13662 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2635 1.1131 0.0000 4 6 3.5513 0.7097 0.0006 5 6 3.5459 -0.6931 0.0027 6 6 2.2550 -1.1011 -0.0002 7 6 1.8464 -2.5537 -0.0032 8 1 1.5181 -2.8450 0.9945 9 6 0.7257 -2.7643 -0.9884 10 1 0.6053 -2.0881 -1.8220 11 6 -0.1460 -3.8200 -0.8257 12 7 -1.0628 -4.0623 -1.7370 13 14 -0.0248 -4.9063 0.6891 14 1 -0.9711 -4.4191 1.7247 15 1 -0.3672 -6.3045 0.3243 16 1 1.3602 -4.8590 1.2226 17 7 3.0128 -3.3616 -0.3978 18 6 4.1960 -3.0292 0.4096 19 6 4.7181 -1.6413 0.0109 20 6 4.4764 1.9078 0.0000 21 6 3.5918 3.0965 0.4353 22 6 2.1872 2.6247 -0.0004 23 1 -0.3633 -0.1024 1.0225 24 1 -0.3633 0.9368 -0.4227 25 1 -0.3633 -0.8343 -0.5999 26 1 -1.6758 -4.8053 -1.6227 27 1 2.8040 -4.3474 -0.3461 28 1 4.9737 -3.7731 0.2366 29 1 3.9253 -3.0258 1.4654 30 1 5.1637 -1.6860 -0.9828 31 1 5.4604 -1.3043 0.7344 32 1 5.2886 1.7596 0.7116 33 1 4.8759 2.0773 -0.9999 34 1 3.6373 3.2410 1.5147 35 1 3.8774 4.0076 -0.0904 36 1 1.9577 2.9920 -1.0007 37 1 1.4352 2.9661 0.7110 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259763338.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:32 Heat of formation + Delta-G solvation = 38.182725 kcal Electronic energy + Delta-G solvation = -18452.669798 eV Core-core repulsion = 15808.645656 eV Total energy + Delta-G solvation = -2644.024141 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.55011 -38.35387 -36.70673 -35.05594 -33.29032 -31.39897 -29.66225 -28.46721 -27.42222 -25.92524 -23.57311 -23.01577 -21.19191 -19.95815 -19.13345 -18.81797 -17.50822 -16.69829 -16.30155 -15.86252 -15.51735 -15.44709 -15.00250 -14.83839 -14.12118 -13.95459 -13.63339 -13.43951 -13.28062 -13.11160 -12.95485 -12.85178 -12.42045 -12.29866 -12.01626 -11.88834 -11.82213 -11.52207 -11.42161 -11.26594 -10.85056 -9.17202 -8.97061 -8.38722 -8.33453 -6.42004 1.26055 1.29616 1.38450 1.47431 2.09157 2.15791 2.24377 2.89538 3.66176 3.73653 3.91443 4.08812 4.24406 4.27251 4.28263 4.43469 4.46247 4.48799 4.62364 4.64350 4.80003 4.89517 4.90059 4.96573 5.01008 5.02991 5.14340 5.24348 5.27068 5.36764 5.45872 5.67968 5.69594 6.10948 6.35353 6.44874 6.53897 6.65617 6.77179 6.80081 7.23464 8.79075 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.028277 B = 0.008453 C = 0.007000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.960216 B = 3311.653508 C = 3998.973509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.420 5.420 3 C -0.059 4.059 4 C -0.202 4.202 5 C -0.183 4.183 6 C 0.027 3.973 7 C 0.258 3.742 8 H 0.002 0.998 9 C -0.492 4.492 10 H 0.030 0.970 11 C 0.029 3.971 12 N -0.932 5.932 13 Si 0.939 3.061 14 H -0.272 1.272 15 H -0.278 1.278 16 H -0.253 1.253 17 N -0.694 5.694 18 C 0.052 3.948 19 C -0.030 4.030 20 C -0.041 4.041 21 C -0.101 4.101 22 C -0.029 4.029 23 H 0.070 0.930 24 H 0.092 0.908 25 H 0.083 0.917 26 H 0.269 0.731 27 H 0.335 0.665 28 H 0.091 0.909 29 H 0.017 0.983 30 H 0.062 0.938 31 H 0.083 0.917 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.104 0.896 36 H 0.079 0.921 37 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.705 10.617 7.315 15.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.093 5.093 3 C -0.170 4.170 4 C -0.209 4.209 5 C -0.189 4.189 6 C -0.087 4.087 7 C 0.150 3.850 8 H 0.019 0.981 9 C -0.531 4.531 10 H 0.048 0.952 11 C -0.171 4.171 12 N -0.571 5.571 13 Si 0.764 3.236 14 H -0.198 1.198 15 H -0.203 1.203 16 H -0.177 1.177 17 N -0.327 5.327 18 C -0.077 4.077 19 C -0.068 4.068 20 C -0.079 4.079 21 C -0.138 4.138 22 C -0.068 4.068 23 H 0.089 0.911 24 H 0.111 0.889 25 H 0.102 0.898 26 H 0.079 0.921 27 H 0.154 0.846 28 H 0.110 0.890 29 H 0.035 0.965 30 H 0.081 0.919 31 H 0.102 0.898 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.098 0.902 35 H 0.123 0.877 36 H 0.097 0.903 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 8.332 10.919 6.758 15.308 hybrid contribution -1.023 -1.537 0.920 2.063 sum 7.309 9.382 7.679 14.157 Atomic orbital electron populations 1.22229 0.77389 1.04833 1.03331 1.43067 1.06265 1.04290 1.55690 1.21803 0.90546 0.92093 1.12582 1.20437 0.95831 0.93225 1.11371 1.19103 0.93667 0.93002 1.13168 1.20352 0.89833 0.89514 1.08964 1.17818 0.88699 0.85347 0.93149 0.98088 1.20730 1.09639 1.12283 1.10469 0.95168 1.25787 0.94553 0.97820 0.98924 1.70031 1.20449 1.30952 1.35687 0.85860 0.79459 0.78511 0.79809 1.19794 1.20298 1.17708 1.60714 1.05238 1.08787 1.58004 1.22116 0.93496 0.98024 0.94061 1.20014 0.94081 0.91679 1.00998 1.20469 0.96247 0.89776 1.01385 1.22324 0.91817 0.97654 1.02037 1.20640 0.99821 0.84146 1.02146 0.91137 0.88908 0.89830 0.92123 0.84565 0.89039 0.96482 0.91926 0.89838 0.90939 0.91128 0.90191 0.87719 0.90290 0.90593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 2.50 10.82 127.77 1.38 3.88 16 2 N -0.42 -18.19 3.14 -517.25 -1.63 -19.81 16 3 C -0.06 -2.18 7.54 41.21 0.31 -1.87 16 4 C -0.20 -7.53 6.94 -19.91 -0.14 -7.67 16 5 C -0.18 -7.80 6.01 -20.01 -0.12 -7.92 16 6 C 0.03 1.29 6.24 41.39 0.26 1.55 16 7 C 0.26 12.81 2.12 43.41 0.09 12.90 16 8 H 0.00 0.10 5.72 -2.39 -0.01 0.08 16 9 C -0.49 -27.84 6.85 25.60 0.18 -27.67 16 10 H 0.03 1.96 7.52 -2.91 -0.02 1.93 16 11 C 0.03 1.63 5.47 84.65 0.46 2.09 16 12 N -0.93 -55.81 13.96 21.45 0.30 -55.51 16 13 Si 0.94 42.70 26.56 68.60 1.82 44.53 16 14 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 15 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 16 H -0.25 -10.78 6.00 99.48 0.60 -10.18 16 17 N -0.69 -31.43 6.41 -496.85 -3.19 -34.62 16 18 C 0.05 1.92 6.53 86.46 0.56 2.48 16 19 C -0.03 -1.07 6.51 30.06 0.20 -0.88 16 20 C -0.04 -1.08 6.78 30.55 0.21 -0.87 16 21 C -0.10 -2.02 7.13 31.57 0.23 -1.79 16 22 C -0.03 -0.75 6.78 30.55 0.21 -0.54 16 23 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 24 H 0.09 3.00 8.12 -2.39 -0.02 2.98 16 25 H 0.08 3.94 5.27 -2.39 -0.01 3.92 16 26 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 27 H 0.34 14.72 7.53 -89.69 -0.68 14.04 16 28 H 0.09 2.76 8.14 -2.39 -0.02 2.74 16 29 H 0.02 0.63 8.07 -2.39 -0.02 0.61 16 30 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 31 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 32 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -68.67 287.98 1.41 -67.26 By element: Atomic # 1 Polarization: 24.18 SS G_CDS: 0.28 Total: 24.46 kcal Atomic # 6 Polarization: -30.13 SS G_CDS: 3.82 Total: -26.30 kcal Atomic # 7 Polarization: -105.43 SS G_CDS: -4.51 Total: -109.94 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 1.82 Total: 44.53 kcal Total: -68.67 1.41 -67.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259763338.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.441 kcal (2) G-P(sol) polarization free energy of solvation -68.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds