Wall clock time and date at job start Mon Mar 30 2020 03:31:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86796 * 120.00055 * 2 1 4 4 H 1.48500 * 109.47465 * 270.00013 * 3 2 1 5 5 H 1.48506 * 109.46933 * 30.00207 * 3 2 1 6 6 H 1.48503 * 109.47061 * 150.00043 * 3 2 1 7 7 C 1.37875 * 119.99794 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00074 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99864 * 180.02562 * 7 2 1 10 10 H 1.09009 * 109.68771 * 300.54041 * 9 7 2 11 11 N 1.47277 * 109.69022 * 61.15241 * 9 7 2 12 12 C 1.46954 * 111.46477 * 171.11800 * 11 9 7 13 13 C 1.53518 * 109.57153 * 288.53552 * 12 11 9 14 14 C 1.50809 * 107.87637 * 49.12104 * 13 12 11 15 15 C 1.39456 * 129.21555 * 164.12570 * 14 13 12 16 16 C 1.35527 * 107.35386 * 180.18440 * 15 14 13 17 17 N 1.36096 * 108.34928 * 359.88599 * 16 15 14 18 18 H 0.96996 * 125.73620 * 180.02562 * 17 16 15 19 19 C 1.35665 * 123.27413 * 344.17386 * 14 13 12 20 20 C 1.50852 * 124.03971 * 179.78379 * 16 15 14 21 21 C 1.53334 * 108.45627 * 343.40279 * 20 16 15 22 22 C 1.53127 * 109.46016 * 50.01223 * 21 20 16 23 23 C 1.50777 * 128.47763 * 0.23879 * 15 14 13 24 24 H 0.96999 * 120.00091 * 0.02562 * 1 2 3 25 25 H 1.00893 * 111.02148 * 46.81031 * 11 9 7 26 26 H 1.09002 * 109.45003 * 168.50949 * 12 11 9 27 27 H 1.08997 * 109.45096 * 48.56154 * 12 11 9 28 28 H 1.09002 * 109.78088 * 168.71859 * 13 12 11 29 29 H 1.09004 * 109.77938 * 289.47270 * 13 12 11 30 30 H 1.09003 * 109.63671 * 103.08981 * 20 16 15 31 31 H 1.08997 * 109.63492 * 223.70885 * 20 16 15 32 32 H 1.08994 * 109.47821 * 170.01094 * 21 20 16 33 33 H 1.09007 * 109.47340 * 290.01693 * 21 20 16 34 34 H 1.08996 * 109.47236 * 49.81820 * 22 21 20 35 35 H 1.09003 * 109.47227 * 169.82235 * 22 21 20 36 36 H 1.09001 * 109.63919 * 43.82904 * 23 15 14 37 37 H 1.09000 * 109.63930 * 283.20906 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0014 9 6 3.5114 -1.1941 0.0011 10 1 3.8790 -0.6727 -0.8828 11 7 4.0072 -0.5248 1.2157 12 6 5.4606 -0.6851 1.3629 13 6 5.7820 -2.1377 1.7415 14 6 5.0410 -3.0397 0.7866 15 6 5.2330 -4.3963 0.5266 16 6 4.3257 -4.7604 -0.4120 17 7 3.5807 -3.6680 -0.7342 18 1 2.8580 -3.6457 -1.3808 19 6 4.0197 -2.6142 0.0016 20 6 4.2053 -6.1552 -0.9739 21 6 5.4884 -6.9255 -0.6399 22 6 5.7993 -6.7761 0.8520 23 6 6.2400 -5.3358 1.1403 24 1 -0.4850 0.8400 -0.0004 25 1 3.5220 -0.8568 2.0356 26 1 5.8220 -0.0176 2.1452 27 1 5.9501 -0.4387 0.4208 28 1 6.8546 -2.3123 1.6568 29 1 5.4561 -2.3334 2.7631 30 1 3.3487 -6.6582 -0.5251 31 1 4.0792 -6.1047 -2.0554 32 1 5.3517 -7.9801 -0.8788 33 1 6.3158 -6.5246 -1.2255 34 1 4.9071 -7.0066 1.4340 35 1 6.5999 -7.4630 1.1268 36 1 6.2826 -5.1746 2.2175 37 1 7.2217 -5.1583 0.7012 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259810062.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:32 Heat of formation + Delta-G solvation = 29.780041 kcal Electronic energy + Delta-G solvation = -18273.488180 eV Core-core repulsion = 15629.099671 eV Total energy + Delta-G solvation = -2644.388509 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.08966 -37.02334 -35.49111 -32.98242 -31.63522 -30.13588 -28.18670 -28.04289 -25.58411 -23.30397 -21.94177 -21.62595 -20.57375 -18.22616 -18.03611 -16.75604 -16.55027 -14.94877 -14.52202 -14.22184 -13.83565 -13.66924 -13.45556 -13.20923 -13.02606 -12.76534 -12.45412 -12.14595 -11.93499 -11.63898 -11.47050 -11.19008 -10.74605 -10.64959 -10.59887 -10.47462 -10.14884 -9.99121 -9.77618 -9.32498 -8.61270 -7.80650 -7.19687 -6.86480 -6.10147 -4.21755 2.94838 3.46065 3.54219 3.57016 3.88198 3.99787 4.63313 4.97215 5.01650 5.07222 5.11597 5.48478 5.51386 5.58639 5.67065 5.75403 5.76951 5.80529 5.91848 5.97879 5.99893 6.10937 6.14672 6.15217 6.22140 6.38560 6.46307 6.51221 6.62474 6.84496 6.96989 7.08328 7.40485 7.78919 7.90580 8.17677 8.18223 8.38956 8.62414 8.86902 9.52972 10.99108 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.033533 B = 0.007270 C = 0.006252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.793644 B = 3850.435216 C = 4477.706397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.087 3.913 3 Si 0.859 3.141 4 H -0.293 1.293 5 H -0.301 1.301 6 H -0.189 1.189 7 C -0.532 4.532 8 H 0.069 0.931 9 C 0.246 3.754 10 H 0.050 0.950 11 N -0.670 5.670 12 C 0.051 3.949 13 C -0.072 4.072 14 C -0.197 4.197 15 C -0.153 4.153 16 C -0.022 4.022 17 N -0.527 5.527 18 H 0.413 0.587 19 C 0.046 3.954 20 C -0.042 4.042 21 C -0.108 4.108 22 C -0.117 4.117 23 C -0.040 4.040 24 H 0.265 0.735 25 H 0.340 0.660 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.061 0.939 37 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.859 -9.764 0.560 15.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.118 4.118 3 Si 0.686 3.314 4 H -0.221 1.221 5 H -0.228 1.228 6 H -0.110 1.110 7 C -0.571 4.571 8 H 0.087 0.913 9 C 0.138 3.862 10 H 0.067 0.933 11 N -0.300 5.300 12 C -0.079 4.079 13 C -0.111 4.111 14 C -0.202 4.202 15 C -0.160 4.160 16 C -0.134 4.134 17 N -0.119 5.119 18 H 0.250 0.750 19 C -0.072 4.072 20 C -0.080 4.080 21 C -0.146 4.146 22 C -0.154 4.154 23 C -0.078 4.078 24 H 0.074 0.926 25 H 0.158 0.842 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 11.640 -9.032 0.164 14.734 hybrid contribution -0.248 -0.135 -0.112 0.304 sum 11.393 -9.167 0.052 14.623 Atomic orbital electron populations 1.69943 1.06981 1.27583 1.48624 1.25007 0.94574 1.00117 0.92144 0.87251 0.84784 0.81063 0.78350 1.22059 1.22812 1.10979 1.20810 0.87490 0.94582 1.54181 0.91313 1.18329 0.95489 0.82119 0.90281 0.93279 1.61862 1.01963 1.59268 1.06887 1.22076 0.91699 0.93547 1.00602 1.20648 0.98295 0.95305 0.96882 1.18866 1.02281 0.93928 1.05159 1.18722 1.01209 0.93955 1.02151 1.20046 0.99336 0.89569 1.04484 1.41380 1.28792 1.07681 1.34042 0.75011 1.21774 0.96878 0.92499 0.96021 1.20034 0.98359 0.90114 0.99491 1.21470 0.97257 0.99045 0.96869 1.21568 1.00954 0.96751 0.96141 1.19906 0.96374 0.92188 0.99315 0.92598 0.84156 0.91924 0.92018 0.92456 0.92486 0.91454 0.91776 0.91939 0.91825 0.92002 0.92308 0.92013 0.92250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.96 13.96 55.43 0.77 -26.18 16 2 C 0.09 2.44 5.47 -17.82 -0.10 2.34 16 3 Si 0.86 20.98 26.95 -169.99 -4.58 16.39 16 4 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 5 H -0.30 -7.56 7.11 56.52 0.40 -7.15 16 6 H -0.19 -4.30 5.23 56.52 0.30 -4.00 16 7 C -0.53 -14.42 9.13 -34.44 -0.31 -14.73 16 8 H 0.07 2.03 7.94 -52.49 -0.42 1.62 16 9 C 0.25 5.71 2.18 -69.74 -0.15 5.56 16 10 H 0.05 1.18 7.55 -51.92 -0.39 0.79 16 11 N -0.67 -14.22 3.33 -108.51 -0.36 -14.58 16 12 C 0.05 0.90 6.55 -3.53 -0.02 0.88 16 13 C -0.07 -1.23 6.39 -27.56 -0.18 -1.40 16 14 C -0.20 -3.86 6.02 -105.04 -0.63 -4.49 16 15 C -0.15 -2.74 5.94 -105.10 -0.62 -3.36 16 16 C -0.02 -0.38 7.05 -81.59 -0.57 -0.96 16 17 N -0.53 -10.28 5.94 -5.19 -0.03 -10.31 16 18 H 0.41 7.63 8.96 -40.82 -0.37 7.26 16 19 C 0.05 0.99 6.41 -81.69 -0.52 0.47 16 20 C -0.04 -0.56 6.29 -27.64 -0.17 -0.74 16 21 C -0.11 -1.24 5.90 -26.49 -0.16 -1.40 16 22 C -0.12 -1.39 5.90 -26.48 -0.16 -1.54 16 23 C -0.04 -0.57 6.27 -27.66 -0.17 -0.74 16 24 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 25 H 0.34 7.38 8.57 -39.30 -0.34 7.04 16 26 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 27 H 0.06 1.10 8.07 -51.93 -0.42 0.69 16 28 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.74 8.11 -51.93 -0.42 0.32 16 34 H 0.06 0.77 8.11 -51.93 -0.42 0.35 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 288.04 15.07 4.34 4.34 Total: -1.00 -30.29 288.04 -9.46 -39.75 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: -5.82 Total: 10.72 kcal Atomic # 6 Polarization: -16.34 SS G_CDS: -3.78 Total: -20.12 kcal Atomic # 7 Polarization: -51.46 SS G_CDS: 0.38 Total: -51.08 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -4.58 Total: 16.39 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -30.29 -9.46 -39.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259810062.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.526 kcal (2) G-P(sol) polarization free energy of solvation -30.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds