Wall clock time and date at job start Mon Mar 30 2020 03:31:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86796 * 120.00055 * 2 1 4 4 H 1.48500 * 109.47465 * 270.00013 * 3 2 1 5 5 H 1.48506 * 109.46933 * 30.00207 * 3 2 1 6 6 H 1.48503 * 109.47061 * 150.00043 * 3 2 1 7 7 C 1.37875 * 119.99794 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00074 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99864 * 180.02562 * 7 2 1 10 10 H 1.09009 * 109.68771 * 300.54041 * 9 7 2 11 11 N 1.47277 * 109.69022 * 61.15241 * 9 7 2 12 12 C 1.46954 * 111.46477 * 171.11800 * 11 9 7 13 13 C 1.53518 * 109.57153 * 288.53552 * 12 11 9 14 14 C 1.50809 * 107.87637 * 49.12104 * 13 12 11 15 15 C 1.39456 * 129.21555 * 164.12570 * 14 13 12 16 16 C 1.35527 * 107.35386 * 180.18440 * 15 14 13 17 17 N 1.36096 * 108.34928 * 359.88599 * 16 15 14 18 18 H 0.96996 * 125.73620 * 180.02562 * 17 16 15 19 19 C 1.35665 * 123.27413 * 344.17386 * 14 13 12 20 20 C 1.50852 * 124.03971 * 179.78379 * 16 15 14 21 21 C 1.53334 * 108.45627 * 343.40279 * 20 16 15 22 22 C 1.53127 * 109.46016 * 50.01223 * 21 20 16 23 23 C 1.50777 * 128.47763 * 0.23879 * 15 14 13 24 24 H 0.96999 * 120.00091 * 0.02562 * 1 2 3 25 25 H 1.00893 * 111.02148 * 46.81031 * 11 9 7 26 26 H 1.09002 * 109.45003 * 168.50949 * 12 11 9 27 27 H 1.08997 * 109.45096 * 48.56154 * 12 11 9 28 28 H 1.09002 * 109.78088 * 168.71859 * 13 12 11 29 29 H 1.09004 * 109.77938 * 289.47270 * 13 12 11 30 30 H 1.09003 * 109.63671 * 103.08981 * 20 16 15 31 31 H 1.08997 * 109.63492 * 223.70885 * 20 16 15 32 32 H 1.08994 * 109.47821 * 170.01094 * 21 20 16 33 33 H 1.09007 * 109.47340 * 290.01693 * 21 20 16 34 34 H 1.08996 * 109.47236 * 49.81820 * 22 21 20 35 35 H 1.09003 * 109.47227 * 169.82235 * 22 21 20 36 36 H 1.09001 * 109.63919 * 43.82904 * 23 15 14 37 37 H 1.09000 * 109.63930 * 283.20906 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0014 9 6 3.5114 -1.1941 0.0011 10 1 3.8790 -0.6727 -0.8828 11 7 4.0072 -0.5248 1.2157 12 6 5.4606 -0.6851 1.3629 13 6 5.7820 -2.1377 1.7415 14 6 5.0410 -3.0397 0.7866 15 6 5.2330 -4.3963 0.5266 16 6 4.3257 -4.7604 -0.4120 17 7 3.5807 -3.6680 -0.7342 18 1 2.8580 -3.6457 -1.3808 19 6 4.0197 -2.6142 0.0016 20 6 4.2053 -6.1552 -0.9739 21 6 5.4884 -6.9255 -0.6399 22 6 5.7993 -6.7761 0.8520 23 6 6.2400 -5.3358 1.1403 24 1 -0.4850 0.8400 -0.0004 25 1 3.5220 -0.8568 2.0356 26 1 5.8220 -0.0176 2.1452 27 1 5.9501 -0.4387 0.4208 28 1 6.8546 -2.3123 1.6568 29 1 5.4561 -2.3334 2.7631 30 1 3.3487 -6.6582 -0.5251 31 1 4.0792 -6.1047 -2.0554 32 1 5.3517 -7.9801 -0.8788 33 1 6.3158 -6.5246 -1.2255 34 1 4.9071 -7.0066 1.4340 35 1 6.5999 -7.4630 1.1268 36 1 6.2826 -5.1746 2.2175 37 1 7.2217 -5.1583 0.7012 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259810062.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:31 Heat of formation + Delta-G solvation = 10.858005 kcal Electronic energy + Delta-G solvation = -18274.308701 eV Core-core repulsion = 15629.099671 eV Total energy + Delta-G solvation = -2645.209030 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.51274 -38.43737 -36.75052 -34.91274 -33.21077 -31.58122 -29.57244 -29.40376 -27.31988 -24.76379 -23.41954 -22.82604 -22.02390 -19.77988 -19.36547 -18.68814 -18.02452 -16.42241 -16.15408 -15.67945 -15.42282 -14.84783 -14.81448 -14.67306 -14.43440 -14.10014 -14.03783 -13.56715 -13.28276 -13.17437 -12.87352 -12.66387 -12.38878 -12.11709 -11.89565 -11.66618 -11.63585 -11.49879 -11.26465 -11.19181 -10.76436 -9.22379 -8.86166 -8.36926 -8.28773 -6.43548 1.46444 1.51463 1.56712 1.93417 2.08883 2.56651 2.58007 3.08024 3.77468 3.93992 4.05719 4.08500 4.26128 4.32177 4.35972 4.49357 4.55069 4.63555 4.73190 4.78489 4.91091 4.92898 4.96681 5.04735 5.11200 5.14535 5.20453 5.27705 5.30933 5.38108 5.52452 5.65654 5.72152 6.07578 6.22015 6.45477 6.54690 6.69044 6.82352 6.90669 7.34581 8.83322 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.033533 B = 0.007270 C = 0.006252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.793644 B = 3850.435216 C = 4477.706397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.032 3.968 3 Si 0.924 3.076 4 H -0.299 1.299 5 H -0.310 1.310 6 H -0.159 1.159 7 C -0.526 4.526 8 H 0.028 0.972 9 C 0.257 3.743 10 H 0.038 0.962 11 N -0.676 5.676 12 C 0.052 3.948 13 C -0.067 4.067 14 C -0.198 4.198 15 C -0.171 4.171 16 C -0.020 4.020 17 N -0.537 5.537 18 H 0.411 0.589 19 C -0.003 4.003 20 C -0.045 4.045 21 C -0.104 4.104 22 C -0.114 4.114 23 C -0.039 4.039 24 H 0.264 0.736 25 H 0.336 0.664 26 H 0.091 0.909 27 H 0.061 0.939 28 H 0.081 0.919 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.090 0.910 33 H 0.064 0.936 34 H 0.053 0.947 35 H 0.086 0.914 36 H 0.064 0.936 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.839 -10.865 1.201 18.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.168 4.168 3 Si 0.749 3.251 4 H -0.226 1.226 5 H -0.237 1.237 6 H -0.079 1.079 7 C -0.564 4.564 8 H 0.047 0.953 9 C 0.148 3.852 10 H 0.056 0.944 11 N -0.305 5.305 12 C -0.077 4.077 13 C -0.106 4.106 14 C -0.204 4.204 15 C -0.178 4.178 16 C -0.133 4.133 17 N -0.129 5.129 18 H 0.247 0.753 19 C -0.120 4.120 20 C -0.083 4.083 21 C -0.142 4.142 22 C -0.152 4.152 23 C -0.076 4.076 24 H 0.073 0.927 25 H 0.154 0.846 26 H 0.110 0.890 27 H 0.079 0.921 28 H 0.099 0.901 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.108 0.892 33 H 0.083 0.917 34 H 0.072 0.928 35 H 0.105 0.895 36 H 0.083 0.917 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 14.651 -10.149 0.810 17.841 hybrid contribution -1.183 0.063 -0.332 1.230 sum 13.468 -10.086 0.478 16.833 Atomic orbital electron populations 1.70078 1.08790 1.28300 1.51235 1.25868 0.95140 1.03727 0.92040 0.86321 0.84493 0.76316 0.78007 1.22617 1.23741 1.07932 1.20988 0.89947 0.92786 1.52671 0.95328 1.17927 0.92606 0.83970 0.90727 0.94449 1.61627 1.04242 1.58916 1.05756 1.22187 0.89093 0.94812 1.01648 1.20655 0.99396 0.94120 0.96431 1.19344 1.01441 0.95201 1.04440 1.19247 1.02225 0.93955 1.02375 1.20857 0.98110 0.90504 1.03819 1.41516 1.29103 1.08231 1.34092 0.75328 1.21612 0.99159 0.92334 0.98887 1.20236 1.00021 0.87936 1.00066 1.21489 0.95814 1.00267 0.96602 1.21575 1.01569 0.95744 0.96276 1.19995 0.95743 0.92695 0.99212 0.92702 0.84620 0.89038 0.92084 0.90060 0.91848 0.90976 0.90679 0.89155 0.91740 0.92792 0.89521 0.91733 0.91140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.20 13.96 21.45 0.30 -58.90 16 2 C 0.03 1.84 5.47 84.65 0.46 2.31 16 3 Si 0.92 44.19 26.95 68.60 1.85 46.04 16 4 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 5 H -0.31 -15.15 7.11 99.48 0.71 -14.44 16 6 H -0.16 -6.81 5.23 99.48 0.52 -6.29 16 7 C -0.53 -29.56 9.13 25.60 0.23 -29.33 16 8 H 0.03 1.79 7.94 -2.91 -0.02 1.77 16 9 C 0.26 12.03 2.18 43.39 0.09 12.12 16 10 H 0.04 1.83 7.55 -2.38 -0.02 1.81 16 11 N -0.68 -27.89 3.33 -497.20 -1.66 -29.54 16 12 C 0.05 1.71 6.55 86.47 0.57 2.27 16 13 C -0.07 -2.10 6.39 30.06 0.19 -1.91 16 14 C -0.20 -7.51 6.02 -20.13 -0.12 -7.63 16 15 C -0.17 -5.83 5.94 -20.17 -0.12 -5.95 16 16 C -0.02 -0.68 7.05 41.32 0.29 -0.39 16 17 N -0.54 -21.36 5.94 -170.34 -1.01 -22.37 16 18 H 0.41 15.92 8.96 -92.71 -0.83 15.09 16 19 C 0.00 -0.13 6.41 41.39 0.27 0.13 16 20 C -0.04 -1.11 6.29 30.01 0.19 -0.92 16 21 C -0.10 -2.01 5.90 30.75 0.18 -1.83 16 22 C -0.11 -2.30 5.90 30.76 0.18 -2.12 16 23 C -0.04 -0.98 6.27 29.99 0.19 -0.79 16 24 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 25 H 0.34 14.35 8.57 -89.70 -0.77 13.58 16 26 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 27 H 0.06 2.02 8.07 -2.39 -0.02 2.01 16 28 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 29 H 0.06 1.93 8.14 -2.38 -0.02 1.91 16 30 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.06 1.26 8.11 -2.38 -0.02 1.24 16 34 H 0.05 1.18 8.11 -2.39 -0.02 1.16 16 35 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -67.36 288.04 1.37 -65.99 By element: Atomic # 1 Polarization: 33.54 SS G_CDS: -0.71 Total: 32.83 kcal Atomic # 6 Polarization: -36.65 SS G_CDS: 2.60 Total: -34.04 kcal Atomic # 7 Polarization: -108.45 SS G_CDS: -2.37 Total: -110.82 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 1.85 Total: 46.04 kcal Total: -67.36 1.37 -65.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259810062.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.850 kcal (2) G-P(sol) polarization free energy of solvation -67.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds